BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0387.0002.p
         (58 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_241521.1| BH0655~unknown conserved protein in bacilli [Ba...    88   6e-17
ref|NP_246410.1| unknown [Pasteurella multocida] >gi|12721853|gb...    70   2e-11
ref|NP_349930.1| Predicted transcriptional regulator [Clostridiu...    68   8e-11
ref|NP_604129.1| Transcriptional regulator, MarR family [Fusobac...    67   1e-10
ref|ZP_00143946.1| Transcriptional regulator, MarR family [Fusob...    66   3e-10

>ref|NP_241521.1| BH0655~unknown conserved protein in bacilli [Bacillus halodurans]
 sp|Q9Z9W1|Y655_BACHD Hypothetical protein BH0655
 pir||T44302 hypothetical protein BH0655 [imported] - Bacillus halodurans
           (strain C-125)
 dbj|BAA75321.1| similar to B.subtilis ydzF gene(54%-identity) [Bacillus halodurans]
 dbj|BAB04374.1| BH0655~unknown conserved protein in bacilli [Bacillus halodurans]
          Length = 113

 Score = 87.8 bits (216), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 40/47 (85%), Positives = 44/47 (93%)

Query: 12  LEADGMVRRKEYPQVPPKVEYSLTDKAETLLPVLEWLCEWGTKNQNS 58
           LEADG+V+RKEYPQVPPKVEYSLTDKA TLLP+LE LCEWG KNQN+
Sbjct: 67  LEADGLVKRKEYPQVPPKVEYSLTDKAGTLLPILEELCEWGVKNQNN 113


>ref|NP_246410.1| unknown [Pasteurella multocida]
 gb|AAK03555.1| unknown [Pasteurella multocida]
          Length = 119

 Score = 69.7 bits (169), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 28/47 (59%), Positives = 39/47 (82%)

Query: 12  LEADGMVRRKEYPQVPPKVEYSLTDKAETLLPVLEWLCEWGTKNQNS 58
           LE DG+V R+EYPQ+PPKVEYSLT + ++L+PVL  +CEWG K++ +
Sbjct: 72  LEKDGLVHREEYPQIPPKVEYSLTARGQSLMPVLRAMCEWGRKHKET 118


>ref|NP_349930.1| Predicted transcriptional regulator [Clostridium acetobutylicum]
 pir||C97310 probable transcription regulator [imported] - Clostridium
           acetobutylicum
 gb|AAK81270.1| Predicted transcriptional regulator [Clostridium acetobutylicum]
          Length = 106

 Score = 67.8 bits (164), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 27/44 (61%), Positives = 38/44 (86%)

Query: 12  LEADGMVRRKEYPQVPPKVEYSLTDKAETLLPVLEWLCEWGTKN 55
           LE+  ++ RKEYPQ+PPKVEYSLT+K E+L+P+++ +CEWG KN
Sbjct: 62  LESKNIISRKEYPQIPPKVEYSLTEKGESLIPLIKDMCEWGIKN 105


>ref|NP_604129.1| Transcriptional regulator, MarR family [Fusobacterium nucleatum
           subsp. nucleatum ATCC 25586]
 gb|AAL95428.1| Transcriptional regulator, MarR family [Fusobacterium nucleatum
           subsp. nucleatum ATCC 25586]
          Length = 113

 Score = 67.0 bits (162), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 26/45 (57%), Positives = 35/45 (77%)

Query: 12  LEADGMVRRKEYPQVPPKVEYSLTDKAETLLPVLEWLCEWGTKNQ 56
           LE D ++ RKEYPQ+PP+VEYSL+ K  TL+P+L  +C+WG KN 
Sbjct: 68  LEEDNIIIRKEYPQIPPRVEYSLSKKGRTLIPILNMMCDWGEKNS 112


>ref|ZP_00143946.1| Transcriptional regulator, MarR family [Fusobacterium nucleatum
           subsp. vincentii ATCC 49256]
 gb|EAA24448.1| Transcriptional regulator, MarR family [Fusobacterium nucleatum
           subsp. vincentii ATCC 49256]
          Length = 113

 Score = 65.9 bits (159), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 25/45 (55%), Positives = 36/45 (80%)

Query: 12  LEADGMVRRKEYPQVPPKVEYSLTDKAETLLPVLEWLCEWGTKNQ 56
           LE D ++ RKEYPQ+PP+VEYSL+ K ++L+P+L  +C+WG KN 
Sbjct: 68  LEKDDIIVRKEYPQIPPRVEYSLSKKGKSLIPILNMMCDWGEKNS 112


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.315    0.133    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 95,202,314
Number of extensions: 2675998
Number of successful extensions: 4230
Number of sequences better than 1.0e-05: 66
Number of HSP's gapped: 4231
Number of HSP's successfully gapped: 66
Length of query: 58
Length of database: 757,237,578
Length adjustment: 30
Effective length of query: 28
Effective length of database: 675,784,608
Effective search space: 18921969024
Effective search space used: 18921969024
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 120 (50.8 bits)