BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0386.0042.p (320 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_693373.1| oligopeptide ABC transporter ATP-binding protei... 436 e-121 ref|NP_244512.1| oligopeptide ABC transporter (ATP-binding prote... 422 e-117 ref|NP_563185.1| oligopeptide ABC transporter [Clostridium perfr... 421 e-117 ref|NP_624051.1| ABC-type dipeptide/oligopeptide/nickel transpor... 416 e-115 ref|NP_767997.1| peptide ABC transporter ATP-binding protein [Br... 408 e-113 >ref|NP_693373.1| oligopeptide ABC transporter ATP-binding protein [Oceanobacillus iheyensis HTE831] dbj|BAC14408.1| oligopeptide ABC transporter ATP-binding protein [Oceanobacillus iheyensis HTE831] Length = 340 Score = 436 bits (1122), Expect = e-121, Method: Compositional matrix adjust. Identities = 197/317 (62%), Positives = 255/317 (80%) Query: 4 ILEVRNLKKHYPIRKGFFAKQVGAVKAVDGITLSVEKGETLAVVGESGCGKSTTGRAILR 63 +LEVR+LKK++P++ G + VG VKAVD ++ V GE L +VGESGCGKSTTG+AILR Sbjct: 8 LLEVRSLKKYFPVKGGVLGRSVGEVKAVDDVSFEVYPGEILGIVGESGCGKSTTGKAILR 67 Query: 64 LIEPTDGEILFDGTDVRSLDTEQLRRFRTDMQMVFQDPYASLDPRWTVQRILEEPLRTHG 123 LIEPT+GE++F G D+ L+ EQ+R R DMQ++FQDPYASL+PR TV++I+ EPL H Sbjct: 68 LIEPTEGEVIFQGKDITKLNAEQMRLLRKDMQIIFQDPYASLNPRHTVEKIINEPLMIHT 127 Query: 124 AAKSNELKSRVEELMQVVGLSPYQAHRFPHEFSGGQRQRIGIARALALNPKFIVCDEPVS 183 AK E + R++EL++VVGLSPY A R+PH+FSGGQRQRIGIARALA NPK I+CDEPVS Sbjct: 128 DAKKAERRKRIKELLEVVGLSPYHASRYPHQFSGGQRQRIGIARALANNPKLIICDEPVS 187 Query: 184 ALDVSIQAQVLNLMQDLQEQYGLTYMFISHDLSVVKFISDRVAVMYLGRIVELAPTKELF 243 ALDVS+Q+QVLNLM+ L++++ LTY+FI+HDLSVVK ISDRV VMYLG++VE+AP +L+ Sbjct: 188 ALDVSVQSQVLNLMEKLRDEFQLTYIFIAHDLSVVKHISDRVGVMYLGKMVEIAPKDQLY 247 Query: 244 AKPLHPYTQALMSAVPVPNPGLKKSRIVLTGDVPNPETPPSGCAFHPRCPFAMDKCRKDE 303 HPYTQAL+SAVP P+P +++ RI+L GDVP+P+ PPSGC FH RCP AMD CR++ Sbjct: 248 DNAKHPYTQALLSAVPDPDPDVQRERIILEGDVPSPQDPPSGCPFHTRCPMAMDICRQEL 307 Query: 304 PVLRQLDSGHQVSCHLY 320 P ++ H V+CHLY Sbjct: 308 PQFLPVEDNHVVACHLY 324 >ref|NP_244512.1| oligopeptide ABC transporter (ATP-binding protein) [Bacillus halodurans] pir||E84105 oligopeptide ABC transporter (ATP-binding protein) BH3645 [imported] - Bacillus halodurans (strain C-125) dbj|BAB07364.1| oligopeptide ABC transporter (ATP-binding protein) [Bacillus halodurans] Length = 322 Score = 422 bits (1085), Expect = e-117, Method: Compositional matrix adjust. Identities = 193/317 (60%), Positives = 247/317 (77%) Query: 4 ILEVRNLKKHYPIRKGFFAKQVGAVKAVDGITLSVEKGETLAVVGESGCGKSTTGRAILR 63 +LEV+NL K + I GFF+++VG V+AVD ++ SV +GE L +VGESGCGKSTTG+AILR Sbjct: 5 LLEVKNLTKSFDINGGFFSRKVGEVRAVDNLSFSVYEGEVLGIVGESGCGKSTTGKAILR 64 Query: 64 LIEPTDGEILFDGTDVRSLDTEQLRRFRTDMQMVFQDPYASLDPRWTVQRILEEPLRTHG 123 LIEP+ GE+ F GT++ +L +R+ R DMQ++FQDPYASL+PR T+++I+ EPL H Sbjct: 65 LIEPSSGEVYFAGTEITALSEGDMRKRRRDMQIIFQDPYASLNPRHTIEKIIREPLIVHQ 124 Query: 124 AAKSNELKSRVEELMQVVGLSPYQAHRFPHEFSGGQRQRIGIARALALNPKFIVCDEPVS 183 E RVEEL++ VGLS A R+PH+FSGGQRQRIGIARALA++PK ++CDEPVS Sbjct: 125 IGTKKEQLERVEELLETVGLSSDHATRYPHQFSGGQRQRIGIARALAVHPKLVICDEPVS 184 Query: 184 ALDVSIQAQVLNLMQDLQEQYGLTYMFISHDLSVVKFISDRVAVMYLGRIVELAPTKELF 243 ALDVS+Q+Q+LNLM DL+E + LTY+FI+HDLSVVK ISDRVAVMYLGR+VE+A +LF Sbjct: 185 ALDVSVQSQILNLMADLKETFALTYIFIAHDLSVVKHISDRVAVMYLGRMVEMATKDQLF 244 Query: 244 AKPLHPYTQALMSAVPVPNPGLKKSRIVLTGDVPNPETPPSGCAFHPRCPFAMDKCRKDE 303 P HPYT+AL+SAVPVP+P K +I+L GDVP+P PP GCAFH RCP MD C+ Sbjct: 245 ENPKHPYTRALLSAVPVPDPDAAKEKILLKGDVPSPSNPPEGCAFHTRCPDCMDVCKIKR 304 Query: 304 PVLRQLDSGHQVSCHLY 320 P L + + GH V+CHLY Sbjct: 305 PSLHEKEKGHYVACHLY 321 >ref|NP_563185.1| oligopeptide ABC transporter [Clostridium perfringens] dbj|BAB81975.1| oligopeptide ABC transporter [Clostridium perfringens str. 13] Length = 322 Score = 421 bits (1083), Expect = e-117, Method: Compositional matrix adjust. Identities = 189/318 (59%), Positives = 247/318 (77%) Query: 2 SAILEVRNLKKHYPIRKGFFAKQVGAVKAVDGITLSVEKGETLAVVGESGCGKSTTGRAI 61 + +L+V NLKK++PI+ G F+K VG VKAVDG++ +++KGETL +VGESGCGKSTTGRAI Sbjct: 4 NTVLKVENLKKYFPIKAGVFSKTVGNVKAVDGVSFTIDKGETLGLVGESGCGKSTTGRAI 63 Query: 62 LRLIEPTDGEILFDGTDVRSLDTEQLRRFRTDMQMVFQDPYASLDPRWTVQRILEEPLRT 121 LRL E TDG + F+G D+ +L ++LR R MQM+FQDPY+SL+PR +V ++ E L + Sbjct: 64 LRLFEKTDGNVYFEGKDIFALKKKELRDLRPKMQMIFQDPYSSLNPRLSVDSLVGEALLS 123 Query: 122 HGAAKSNELKSRVEELMQVVGLSPYQAHRFPHEFSGGQRQRIGIARALALNPKFIVCDEP 181 H +EL RV + ++ GL+ Y R+PHEFSGGQRQRIGIARAL LNP FIV DEP Sbjct: 124 HKLCSKDELPERVAKTIERCGLARYHMKRYPHEFSGGQRQRIGIARALILNPSFIVADEP 183 Query: 182 VSALDVSIQAQVLNLMQDLQEQYGLTYMFISHDLSVVKFISDRVAVMYLGRIVELAPTKE 241 VSALDVSIQ+Q++NLM DLQE+ G +Y+FISHDLS+VK I ++ VMYLG +VELAP E Sbjct: 184 VSALDVSIQSQIVNLMMDLQEEMGFSYLFISHDLSIVKHICHKIGVMYLGSLVELAPKNE 243 Query: 242 LFAKPLHPYTQALMSAVPVPNPGLKKSRIVLTGDVPNPETPPSGCAFHPRCPFAMDKCRK 301 L+ PLHPYT+AL+SAVP+P+P +K+ RI+L GD+P+P PPSGC FH RCP+AMDKC+K Sbjct: 244 LYDNPLHPYTKALLSAVPIPDPTIKRERIILKGDIPSPANPPSGCKFHTRCPYAMDKCKK 303 Query: 302 DEPVLRQLDSGHQVSCHL 319 + P + + H V+CHL Sbjct: 304 EAPEYKCVGKDHFVACHL 321 >ref|NP_624051.1| ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Thermoanaerobacter tengcongensis] gb|AAM25655.1| ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Thermoanaerobacter tengcongensis] Length = 321 Score = 416 bits (1070), Expect = e-115, Method: Compositional matrix adjust. Identities = 191/316 (60%), Positives = 243/316 (76%) Query: 4 ILEVRNLKKHYPIRKGFFAKQVGAVKAVDGITLSVEKGETLAVVGESGCGKSTTGRAILR 63 ++EV+NLKK++PIR G + +G VKAVDG++ ++ KGETL++VGESGCGKST GR I+R Sbjct: 5 LIEVKNLKKYFPIRGGVLQRTIGYVKAVDGVSFTINKGETLSLVGESGCGKSTVGRTIIR 64 Query: 64 LIEPTDGEILFDGTDVRSLDTEQLRRFRTDMQMVFQDPYASLDPRWTVQRILEEPLRTHG 123 L + TDG++LF G + SL +LR+ R MQMVFQDP++SL+PR + + E L HG Sbjct: 65 LYDKTDGDVLFKGIPIHSLKKSELRKLRPKMQMVFQDPFSSLNPRLRIGDAVGEALLDHG 124 Query: 124 AAKSNELKSRVEELMQVVGLSPYQAHRFPHEFSGGQRQRIGIARALALNPKFIVCDEPVS 183 NEL+ RV E +++ GL+ Y R+PHEFSGGQRQRIGIARAL L+P+FIV DEPVS Sbjct: 125 LVSKNELRDRVIEALEMCGLASYHIDRYPHEFSGGQRQRIGIARALILDPEFIVLDEPVS 184 Query: 184 ALDVSIQAQVLNLMQDLQEQYGLTYMFISHDLSVVKFISDRVAVMYLGRIVELAPTKELF 243 +LDVSIQAQ++NL+ DLQ+Q GLTY+FISHDLSVV+ IS RVAVMYLG IVE+A ELF Sbjct: 185 SLDVSIQAQIINLLMDLQQQKGLTYLFISHDLSVVEHISTRVAVMYLGNIVEMASRDELF 244 Query: 244 AKPLHPYTQALMSAVPVPNPGLKKSRIVLTGDVPNPETPPSGCAFHPRCPFAMDKCRKDE 303 PLHPYTQAL+SAVP+P+P LK+ RI+L GD+P+P PP GC FH RCPFA D C++ Sbjct: 245 DHPLHPYTQALLSAVPIPDPDLKRERIILEGDIPSPANPPKGCKFHTRCPFAKDICKEQV 304 Query: 304 PVLRQLDSGHQVSCHL 319 P R + GH V+CHL Sbjct: 305 PEFRDVGGGHYVACHL 320 >ref|NP_767997.1| peptide ABC transporter ATP-binding protein [Bradyrhizobium japonicum] dbj|BAC46622.1| peptide ABC transporter ATP-binding protein [Bradyrhizobium japonicum USDA 110] Length = 322 Score = 408 bits (1049), Expect = e-113, Method: Compositional matrix adjust. Identities = 198/317 (62%), Positives = 238/317 (75%), Gaps = 1/317 (0%) Query: 4 ILEVRNLKKHYPIRKGFFAKQVGAVKAVDGITLSVEKGETLAVVGESGCGKSTTGRAILR 63 +L V LKKH+P+ G ++QVG+V AVDG++ SV +GETL +VGESGCGKSTTGR +LR Sbjct: 5 LLRVSGLKKHFPVLGGLLSRQVGSVYAVDGVSFSVNRGETLGLVGESGCGKSTTGRCVLR 64 Query: 64 LIEPTDGEILFDGTDVRSLDTEQLRRFRTDMQMVFQDPYASLDPRWTVQRILEEPLRTHG 123 LIEPTDGE+ FDG DVR L LR R +MQ+VFQDP+ASL+PR TV IL E L H Sbjct: 65 LIEPTDGEVTFDGQDVRQLGGNDLRAMRRNMQLVFQDPFASLNPRMTVGTILGEALVIHK 124 Query: 124 AAKS-NELKSRVEELMQVVGLSPYQAHRFPHEFSGGQRQRIGIARALALNPKFIVCDEPV 182 S E + RV L+ VGL R+PHEFSGGQRQRI IARALA+ PK IVCDEPV Sbjct: 125 LGSSAKEREERVASLLVKVGLKAEHMRRYPHEFSGGQRQRIVIARALAVEPKLIVCDEPV 184 Query: 183 SALDVSIQAQVLNLMQDLQEQYGLTYMFISHDLSVVKFISDRVAVMYLGRIVELAPTKEL 242 SALDVSIQAQV+NL++DLQ + LTY+F++HDLSVV+ ISDRVAVMYLGRIVELA +L Sbjct: 185 SALDVSIQAQVINLLEDLQAELNLTYLFVAHDLSVVEHISDRVAVMYLGRIVELAKASDL 244 Query: 243 FAKPLHPYTQALMSAVPVPNPGLKKSRIVLTGDVPNPETPPSGCAFHPRCPFAMDKCRKD 302 + P HPYT+AL+SAVPVP+P LK+ RI L GDVP+P PPSGC FH RCP A +C + Sbjct: 245 YRNPQHPYTRALLSAVPVPDPKLKRERIRLKGDVPSPMKPPSGCHFHTRCPIAQPRCAES 304 Query: 303 EPVLRQLDSGHQVSCHL 319 P L++ GH V+CHL Sbjct: 305 APELKEGAGGHFVACHL 321 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.321 0.137 0.405 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 461,525,279 Number of extensions: 18968510 Number of successful extensions: 116442 Number of sequences better than 1.0e-05: 19910 Number of HSP's gapped: 94401 Number of HSP's successfully gapped: 21318 Length of query: 320 Length of database: 757,237,578 Length adjustment: 125 Effective length of query: 195 Effective length of database: 417,850,203 Effective search space: 81480789585 Effective search space used: 81480789585 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 126 (53.1 bits)