BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0386.0041.p (331 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_244513.1| oligopeptide ABC transporter (ATP-binding prote... 400 e-110 ref|NP_658524.1| ABC_tran, ABC transporter [Bacillus anthracis A... 395 e-108 ref|NP_240894.1| oligopeptide ABC transporter (ATP-binding prote... 389 e-107 ref|NP_389018.1| oligopeptide ABC transporter (ATP-binding prote... 387 e-106 ref|NP_346821.1| Oligopeptide transport ATP-binding protein [Clo... 386 e-106 >ref|NP_244513.1| oligopeptide ABC transporter (ATP-binding protein) [Bacillus halodurans] pir||F84105 oligopeptide ABC transporter (ATP-binding protein) BH3646 [imported] - Bacillus halodurans (strain C-125) dbj|BAB07365.1| oligopeptide ABC transporter (ATP-binding protein) [Bacillus halodurans] Length = 329 Score = 400 bits (1028), Expect = e-110, Method: Compositional matrix adjust. Identities = 190/319 (59%), Positives = 243/319 (76%) Query: 10 LLEVSGLCTEFSTAAGTIRAVDGISLSVRKGETLGIVGESGCGKSITSLSIMQLLPKRIS 69 +LE+ L T F T G + AVDG+SL + +GE +GIVGESGCGKS+TSLSIMQL+P Sbjct: 5 VLELDKLRTHFFTDQGEVPAVDGVSLRLHQGEIIGIVGESGCGKSVTSLSIMQLVPNPPG 64 Query: 70 RIAAGQIRFEGKDMLKMPVKEVRGIRGNRIAMIFQEPMTSLNPVFKIGRQISESARFHLK 129 +I +G + F+G+D++++ K ++ IRGN IAMIFQEPMTSLNP+F IG Q+ E+ R H K Sbjct: 65 KIMSGHVYFKGEDLVQVSPKRMKQIRGNDIAMIFQEPMTSLNPLFTIGNQLIEAIRNHRK 124 Query: 130 LSKKEADERAVEMLRKVGIPRPEKIAQQYAHQLSGGMRQRVMIAMAMVCSPQLLIADEPT 189 ++K+EA ++AV ML +VGIPR ++IA +Y HQLSGGMRQRVMIAMAM C P++LIADEPT Sbjct: 125 MTKQEARKQAVTMLERVGIPRADEIASEYPHQLSGGMRQRVMIAMAMCCDPKVLIADEPT 184 Query: 190 TALDVTIQAQILDLMRELQQTEGMSILMITHDLGVVAEMCDRVVIMYAGQIVEEADVATL 249 TALDVTIQAQILDLMR L + +IL+ITHDLGVVAE+C+RVV+MYAGQ+VEE DV + Sbjct: 185 TALDVTIQAQILDLMRHLNEAHDTAILLITHDLGVVAELCNRVVVMYAGQVVEEGDVRMI 244 Query: 250 FGKPLHPYTQGLLASLPQLAGENDRLTSIPGQVPNPANLPSGCRFAPRCPAAVDRCWAER 309 P HPYT+GLL SLP++ ++ RL SIPG VP P + GCRFA RC A +RC Sbjct: 245 LKHPKHPYTKGLLKSLPKIHEQSKRLYSIPGVVPKPGTVGHGCRFAARCEVAFERCKTTA 304 Query: 310 PELLEIRPGHSCRCLLQQE 328 P+L ++ GH CRC L +E Sbjct: 305 PQLQQVATGHQCRCFLYEE 323 >ref|NP_658524.1| ABC_tran, ABC transporter [Bacillus anthracis A2012] ref|NP_846943.1| oligopeptide ABC transporter, ATP-binding protein [Bacillus anthracis str. Ames] gb|AAP28429.1| oligopeptide ABC transporter, ATP-binding protein [Bacillus anthracis str. Ames] Length = 338 Score = 395 bits (1014), Expect = e-108, Method: Compositional matrix adjust. Identities = 193/320 (60%), Positives = 237/320 (74%) Query: 6 KMTELLEVSGLCTEFSTAAGTIRAVDGISLSVRKGETLGIVGESGCGKSITSLSIMQLLP 65 K E+L+V L T F T G +AVDG++ S+ KGETLGIVGESGCGKSITSLSIM+L+ Sbjct: 3 KKEEVLQVKDLKTHFFTDEGVSKAVDGLNFSISKGETLGIVGESGCGKSITSLSIMRLID 62 Query: 66 KRISRIAAGQIRFEGKDMLKMPVKEVRGIRGNRIAMIFQEPMTSLNPVFKIGRQISESAR 125 + G I F+GKD+L+ E+R IRGN+I+MIFQEPMTSLNPV+ +G QI+E+ R Sbjct: 63 RESGSKVEGNILFKGKDLLQQNESEMRAIRGNQISMIFQEPMTSLNPVYSVGEQIAEAIR 122 Query: 126 FHLKLSKKEADERAVEMLRKVGIPRPEKIAQQYAHQLSGGMRQRVMIAMAMVCSPQLLIA 185 H KLSKKEA +AV+ML+ VGIP PEK A+Q H+LSGGMRQR+MIAMA+ C+P LLIA Sbjct: 123 IHQKLSKKEAWNKAVDMLKLVGIPSPEKRAKQEPHELSGGMRQRIMIAMALACNPDLLIA 182 Query: 186 DEPTTALDVTIQAQILDLMRELQQTEGMSILMITHDLGVVAEMCDRVVIMYAGQIVEEAD 245 DEPTTALDVTIQAQIL LM+ LQ+ GM I+MITHDLGVV+E CDRV +MYAG+IVE AD Sbjct: 183 DEPTTALDVTIQAQILSLMKSLQKQLGMGIIMITHDLGVVSETCDRVAVMYAGKIVEYAD 242 Query: 246 VATLFGKPLHPYTQGLLASLPQLAGENDRLTSIPGQVPNPANLPSGCRFAPRCPAAVDRC 305 + +F P HPYT GLL SLP L + + L +IPG VP+P ++PSGCRFA R A + C Sbjct: 243 IEHIFTSPKHPYTIGLLQSLPSLDTDQEELQTIPGSVPSPYHMPSGCRFADRYTHAKELC 302 Query: 306 WAERPELLEIRPGHSCRCLL 325 PEL + G RC + Sbjct: 303 HNTLPELQLTQDGSEVRCWM 322 >ref|NP_240894.1| oligopeptide ABC transporter (ATP-binding protein) [Bacillus halodurans] pir||D83653 oligopeptide ABC transporter (ATP-binding protein) BH0028 [imported] - Bacillus halodurans (strain C-125) dbj|BAB03747.1| oligopeptide ABC transporter (ATP-binding protein) [Bacillus halodurans] Length = 347 Score = 389 bits (998), Expect = e-107, Method: Compositional matrix adjust. Identities = 194/326 (59%), Positives = 244/326 (74%), Gaps = 3/326 (0%) Query: 6 KMTELLEVSGLCTEFSTAAGTIRAVDGISLSVRKGETLGIVGESGCGKSITSLSIMQLLP 65 K +LEV L T F T A ++AVDG++ SV KG+TLGIVGESG GKSITSLSI++L+ Sbjct: 8 KAETILEVRDLRTSFFTEAFEVKAVDGVTFSVPKGKTLGIVGESGSGKSITSLSILKLI- 66 Query: 66 KRISRIAAGQIRFEGKDMLKMPVKEVRGIRGNRIAMIFQEPMTSLNPVFKIGRQISESAR 125 + ++ G+I F+G++++ +R IRGN I+MIFQEPMTSLNPV+ +G+QISES R Sbjct: 67 QEPGKVVGGEINFKGENLVTKNEAYMRKIRGNEISMIFQEPMTSLNPVYTVGQQISESFR 126 Query: 126 FHLKLSKKEADERAVEMLRKVGIPRPEKIAQQYAHQLSGGMRQRVMIAMAMVCSPQLLIA 185 H KL KKEA +R+V+ML+ VGIP PEK QY H+LSGGMRQRVMIAMA+ C+P+LLIA Sbjct: 127 IHEKLGKKEALKRSVDMLKLVGIPSPEKRVHQYPHELSGGMRQRVMIAMALACNPELLIA 186 Query: 186 DEPTTALDVTIQAQILDLMRELQQTEGMSILMITHDLGVVAEMCDRVVIMYAGQIVEEAD 245 DEPTTALDVTIQAQIL+LM++LQ GMSI+MITHDLGVVAE CD V +MY G++VE AD Sbjct: 187 DEPTTALDVTIQAQILELMKDLQDRLGMSIIMITHDLGVVAETCDYVAVMYCGKVVEYAD 246 Query: 246 VATLFGKPLHPYTQGLLASLPQ--LAGENDRLTSIPGQVPNPANLPSGCRFAPRCPAAVD 303 V TLF P HPYT GLL SLP+ + E++ L+ I G VP+PA++P GCRFAPRCP A D Sbjct: 247 VKTLFKNPRHPYTVGLLNSLPRHDIDLEDEELSVIKGNVPSPADMPEGCRFAPRCPFASD 306 Query: 304 RCWAERPELLEIRPGHSCRCLLQQEE 329 C P+L G+ RC + E+ Sbjct: 307 ICKERLPDLETDENGNQIRCWVYSEQ 332 >ref|NP_389018.1| oligopeptide ABC transporter (ATP-binding protein) [Bacillus subtilis] sp|P42064|APPD_BACSU Oligopeptide transport ATP-binding protein appD pir||I40543 oligopeptide transport ATP-binding protein appD - Bacillus subtilis gb|AAA62356.1| AppD emb|CAB12993.1| oligopeptide ABC transporter (ATP-binding protein) [Bacillus subtilis subsp. subtilis str. 168] Length = 328 Score = 387 bits (993), Expect = e-106, Method: Compositional matrix adjust. Identities = 186/323 (57%), Positives = 234/323 (72%) Query: 7 MTELLEVSGLCTEFSTAAGTIRAVDGISLSVRKGETLGIVGESGCGKSITSLSIMQLLPK 66 M+ LLEV+ L T F I AVDG+ + KGET+ +VGESG GKSITSLSIM L+ Sbjct: 1 MSTLLEVNNLKTYFFRKKEPIPAVDGVDFHISKGETVALVGESGSGKSITSLSIMGLVQS 60 Query: 67 RISRIAAGQIRFEGKDMLKMPVKEVRGIRGNRIAMIFQEPMTSLNPVFKIGRQISESARF 126 +I G I+ E KD+ + IRGN ++MIFQEPMTSLNPV IG QI+E + Sbjct: 61 SGGKIMDGSIKLEDKDLTSFTENDYCKIRGNEVSMIFQEPMTSLNPVLTIGEQITEVLIY 120 Query: 127 HLKLSKKEADERAVEMLRKVGIPRPEKIAQQYAHQLSGGMRQRVMIAMAMVCSPQLLIAD 186 H + KKEA +RAVE+L+ VG R E+I ++Y H+LSGGMRQRVMIA+A+ C+P+LLIAD Sbjct: 121 HKNMKKKEARQRAVELLQMVGFSRAEQIMKEYPHRLSGGMRQRVMIAIALSCNPKLLIAD 180 Query: 187 EPTTALDVTIQAQILDLMRELQQTEGMSILMITHDLGVVAEMCDRVVIMYAGQIVEEADV 246 EPTTALDVTIQAQ+L+LM++L Q SIL+ITHDLGVV+E DRV++MY GQ+VE A V Sbjct: 181 EPTTALDVTIQAQVLELMKDLCQKFNTSILLITHDLGVVSEAADRVIVMYCGQVVENATV 240 Query: 247 ATLFGKPLHPYTQGLLASLPQLAGENDRLTSIPGQVPNPANLPSGCRFAPRCPAAVDRCW 306 LF +PLHPYT+GLL S+P + GE D+L +I G VP P NLP GCRFAPRCP A+D+CW Sbjct: 241 DDLFLEPLHPYTEGLLTSIPVIDGEIDKLNAIKGSVPTPDNLPPGCRFAPRCPKAMDKCW 300 Query: 307 AERPELLEIRPGHSCRCLLQQEE 329 +P LL + G + RC L +EE Sbjct: 301 TNQPSLLTHKSGRTVRCFLYEEE 323 >ref|NP_346821.1| Oligopeptide transport ATP-binding protein [Clostridium acetobutylicum] pir||F96921 oligopeptide transport ATP-binding protein CAC0179 [imported] - Clostridium acetobutylicum gb|AAK78161.1| Oligopeptide transport ATP-binding protein [Clostridium acetobutylicum] Length = 325 Score = 386 bits (992), Expect = e-106, Method: Compositional matrix adjust. Identities = 185/319 (57%), Positives = 237/319 (74%) Query: 10 LLEVSGLCTEFSTAAGTIRAVDGISLSVRKGETLGIVGESGCGKSITSLSIMQLLPKRIS 69 LL+V L T F T GT++AVD +S +++ ETL IVGESGCGKSIT++SIM+L+P Sbjct: 5 LLQVKNLKTYFHTEEGTVKAVDDVSFEIKEKETLAIVGESGCGKSITAMSIMRLIPNPPG 64 Query: 70 RIAAGQIRFEGKDMLKMPVKEVRGIRGNRIAMIFQEPMTSLNPVFKIGRQISESARFHLK 129 +I G+I F+GKD++KM ++R IRGN+I++IFQEPMTSLNPVF +G QI E+ H K Sbjct: 65 KIEGGEILFDGKDLIKMRQSDIREIRGNKISLIFQEPMTSLNPVFTVGEQIEEALILHKK 124 Query: 130 LSKKEADERAVEMLRKVGIPRPEKIAQQYAHQLSGGMRQRVMIAMAMVCSPQLLIADEPT 189 + KK+A A++ML V IPR E+I + Y H+LSGGMRQRV+IAMA+ CSP+LLIADEPT Sbjct: 125 MDKKQAKREAIKMLTMVRIPRAEEIYKAYPHELSGGMRQRVVIAMAISCSPRLLIADEPT 184 Query: 190 TALDVTIQAQILDLMRELQQTEGMSILMITHDLGVVAEMCDRVVIMYAGQIVEEADVATL 249 TALDVTIQAQILD+MREL++ SI++ITHDLG+VAEM D VV+MYAG+IVE+A V L Sbjct: 185 TALDVTIQAQILDIMRELKEKVNTSIILITHDLGIVAEMADYVVVMYAGKIVEKAPVIEL 244 Query: 250 FGKPLHPYTQGLLASLPQLAGENDRLTSIPGQVPNPANLPSGCRFAPRCPAAVDRCWAER 309 + P HPYT GLL S P + D+L SI GQVPNP ++P GC F PRC A D C ++ Sbjct: 245 YKNPKHPYTVGLLKSKPVINRLQDKLYSIEGQVPNPLDMPEGCYFNPRCSKAKDICRKKQ 304 Query: 310 PELLEIRPGHSCRCLLQQE 328 P L ++ GHS C L +E Sbjct: 305 PNLKKVSEGHSVSCWLCEE 323 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.321 0.136 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 444,882,241 Number of extensions: 17520105 Number of successful extensions: 111041 Number of sequences better than 1.0e-05: 18889 Number of HSP's gapped: 90911 Number of HSP's successfully gapped: 20132 Length of query: 331 Length of database: 757,237,578 Length adjustment: 126 Effective length of query: 205 Effective length of database: 415,135,104 Effective search space: 85102696320 Effective search space used: 85102696320 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 126 (53.1 bits)