BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0386.0037.p (325 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_00054427.1| COG0601: ABC-type dipeptide/oligopeptide/nick... 318 1e-85 ref|NP_767677.1| ABC transporter permease protein [Bradyrhizobiu... 295 1e-78 ref|NP_946820.1| putative dipeptide transport permease protein [... 291 1e-77 ref|NP_693371.1| dipeptide ABC transporter permease [Oceanobacil... 265 8e-70 ref|NP_223005.1| DIPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN [He... 257 2e-67 >ref|ZP_00054427.1| COG0601: ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Magnetospirillum magnetotacticum] Length = 350 Score = 318 bits (815), Expect = 1e-85, Method: Compositional matrix adjust. Identities = 148/324 (45%), Positives = 212/324 (65%) Query: 2 IPALLGIIVITFILSRVLPGDPAIMLAGEQAPEETVNKIRQDMGLDKPLYIQFFSYFGQL 61 +P++ ++V+TF+L+R LPGDPA AG A +E+V +IR+ +GLDKPL +QF +Y G L Sbjct: 26 LPSIAAVVVVTFVLTRALPGDPAAYFAGPAADQESVEEIRRKLGLDKPLPVQFIAYLGDL 85 Query: 62 FQGNIGYAYHTGHSVASDLATRFPXXXXXXXXXXXXXXXXXXXXXXXXXTRKESVLDHIS 121 QGN G + TG VA+D+A R P TR S +DH++ Sbjct: 86 AQGNFGTSLTTGQPVAADIAQRLPASVELTLCGLVLALVIAIPLGIAAATRPGSWVDHLA 145 Query: 122 RVFSLIGACVPIFWLGLMFIYIFYSILGWAPAPMGRISGDLNPPSHITGLYVLDSILSGD 181 RV S G +P+F+ GL+ +YIFY +LGWAPAPMGR+ P ITG Y++DS+++GD Sbjct: 146 RVISTAGVSLPVFFTGLLLVYIFYYLLGWAPAPMGRLDLFATAPPTITGFYLVDSLIAGD 205 Query: 182 MVALKSSIVHLVLPAICLSTGTMAIVARMTRSSMLEVVDQDFVRTARAKGLKESAVIYKH 241 A ++S L LPA+ L +A +ARMTR+SML V+ DF+RTARA GL V+ + Sbjct: 206 GAAFRASAAQLALPALTLGLFALAPLARMTRASMLGVLSSDFIRTARASGLSRGTVLVTY 265 Query: 242 ALVNALIPTLTVLGLQFGYLMGGAVITETIFSWPGIGGYVTDSILAADYAPIQAFTLVSA 301 AL NAL+P +T LG+ F +L+G V+ E +F+WPGIG Y ++++A+DYAP+Q F L A Sbjct: 266 ALRNALLPVVTTLGMVFSFLLGANVLVEKVFAWPGIGSYAIEALVASDYAPVQGFILTMA 325 Query: 302 ILYCGINLAVDLIYGLIDPRIRYE 325 ++Y +NL +D++YGLIDPR+R E Sbjct: 326 VMYVALNLMIDILYGLIDPRVRIE 349 >ref|NP_767677.1| ABC transporter permease protein [Bradyrhizobium japonicum] dbj|BAC46302.1| ABC transporter permease protein [Bradyrhizobium japonicum USDA 110] Length = 337 Score = 295 bits (754), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 133/324 (41%), Positives = 210/324 (64%) Query: 2 IPALLGIIVITFILSRVLPGDPAIMLAGEQAPEETVNKIRQDMGLDKPLYIQFFSYFGQL 61 IP+L+G++++TF+L+R LPGDPA AG A +E V +IR+ +GLD+PL QFF Y L Sbjct: 13 IPSLIGVVIVTFLLTRALPGDPAAYFAGPAATKEAVEQIRKKLGLDRPLIEQFFRYTNDL 72 Query: 62 FQGNIGYAYHTGHSVASDLATRFPXXXXXXXXXXXXXXXXXXXXXXXXXTRKESVLDHIS 121 G+ G + TG VA+++ R P TR S +DH+ Sbjct: 73 AHGDFGNSLTTGQPVAAEIRNRLPASAELTLLGLIVSIVIAIPLGVLAATRPGSWVDHLC 132 Query: 122 RVFSLIGACVPIFWLGLMFIYIFYSILGWAPAPMGRISGDLNPPSHITGLYVLDSILSGD 181 RV + G +P+F+ GL+ +Y+FY LGW+PAP+GR+ + P +TG Y++D++++ D Sbjct: 133 RVTTTAGVSLPVFFTGLVLVYVFYFRLGWSPAPLGRLDVFYSAPPTVTGFYLIDTLIARD 192 Query: 182 MVALKSSIVHLVLPAICLSTGTMAIVARMTRSSMLEVVDQDFVRTARAKGLKESAVIYKH 241 + A +S++ L+LPA L+ ++A +ARMTR+SML V+ +FVRTARA GL + VI + Sbjct: 193 LEAFRSALSQLILPATTLAIFSLAPIARMTRASMLAVLASEFVRTARASGLSPATVIVTY 252 Query: 242 ALVNALIPTLTVLGLQFGYLMGGAVITETIFSWPGIGGYVTDSILAADYAPIQAFTLVSA 301 A NA++P +T L + F +L+G V+ E +F+WPGIG Y ++++++D+AP+Q F L A Sbjct: 253 AFRNAMLPVITTLSMVFSFLLGANVLVEKVFAWPGIGSYAVEALISSDFAPVQGFVLTMA 312 Query: 302 ILYCGINLAVDLIYGLIDPRIRYE 325 ++Y +NL +D++YG+IDPR+R E Sbjct: 313 VMYVLLNLVIDILYGVIDPRVRLE 336 >ref|NP_946820.1| putative dipeptide transport permease protein [Rhodopseudomonas palustris CGA009] emb|CAE26914.1| putative dipeptide transport permease protein [Rhodopseudomonas palustris CGA009] Length = 337 Score = 291 bits (745), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 132/324 (40%), Positives = 207/324 (63%) Query: 2 IPALLGIIVITFILSRVLPGDPAIMLAGEQAPEETVNKIRQDMGLDKPLYIQFFSYFGQL 61 IP+L+G++++TF+L+R LPGDPA AG A +E + +IR +GLDK L QF Y +L Sbjct: 13 IPSLIGVVIVTFLLTRALPGDPAAYFAGPAASKEAIEQIRHKLGLDKSLPEQFVRYTTEL 72 Query: 62 FQGNIGYAYHTGHSVASDLATRFPXXXXXXXXXXXXXXXXXXXXXXXXXTRKESVLDHIS 121 QG++G + TG VA+++ R P TR S +DH+ Sbjct: 73 AQGDLGQSLTTGQPVATEIRNRLPASAELTLLGLAIAVVIAIPLGIMAATRPGSWIDHLC 132 Query: 122 RVFSLIGACVPIFWLGLMFIYIFYSILGWAPAPMGRISGDLNPPSHITGLYVLDSILSGD 181 R+ + G +P+F+ GL+ +Y+FY LGW+PAP+GR+ + P +TG Y++DS+++ D Sbjct: 133 RITTTAGVSLPVFFTGLLLVYVFYFKLGWSPAPLGRLDVFYSAPPTVTGFYLIDSLIARD 192 Query: 182 MVALKSSIVHLVLPAICLSTGTMAIVARMTRSSMLEVVDQDFVRTARAKGLKESAVIYKH 241 +S++ L+LPA L+ ++A +ARMTR+SML ++ DFVRTARA GL V + Sbjct: 193 FETFRSALSQLLLPAATLAIFSLAPIARMTRASMLAILASDFVRTARASGLSPRKVTMTY 252 Query: 242 ALVNALIPTLTVLGLQFGYLMGGAVITETIFSWPGIGGYVTDSILAADYAPIQAFTLVSA 301 A NA++P +T L + F +L+G V+ E +F+WPGIG Y ++++A+D+AP+Q F L A Sbjct: 253 AFRNAMLPVITTLSMVFSFLLGANVLVEKVFAWPGIGSYAVEALIASDFAPVQGFVLTMA 312 Query: 302 ILYCGINLAVDLIYGLIDPRIRYE 325 ++Y +NLA+D++YG+IDPR+R E Sbjct: 313 VMYVLLNLAIDILYGVIDPRVRLE 336 >ref|NP_693371.1| dipeptide ABC transporter permease [Oceanobacillus iheyensis HTE831] dbj|BAC14406.1| dipeptide ABC transporter permease [Oceanobacillus iheyensis HTE831] Length = 333 Score = 265 bits (678), Expect = 8e-70, Method: Compositional matrix adjust. Identities = 141/324 (43%), Positives = 200/324 (61%), Gaps = 2/324 (0%) Query: 1 MIPALLGIIVITFILSRVLPGDPAIMLAGEQAPEETVNKIRQDMGLDKPLYIQFFSYFGQ 60 +IP LLG+ +ITF + ++PG+PA ++ GE A E+++ + + MGL++P +Q+ Y G Sbjct: 12 LIPVLLGMTIITFSIVHLIPGNPAKVILGETATEQSIKSLEESMGLNEPYLVQYSRYLGD 71 Query: 61 LFQGNIGYAYHTGHSVASDLATRFPXXXXXXXXXXXXXXXXXXXXXXXXXTRKESVLDHI 120 L QG++G + T ++S++ ++ S D + Sbjct: 72 LVQGDLGTSLRTKADISSEIWPYIAATFELTLFAMLFAIVIGVNAGIISAWKQNSWFDFL 131 Query: 121 SRVFSLIGACVPIFWLGLMFIYIFYSILGWAPAPMGRISGDLNPPSHITGLYVLDSILSG 180 + +F+LIG +P+FWL LM ++F LGW PA + D P + IT YVLDS++ Sbjct: 132 AMLFALIGVSMPVFWLALMEQWVFAQELGWLPANSRQNPRD--PIAVITHFYVLDSLIHL 189 Query: 181 DMVALKSSIVHLVLPAICLSTGTMAIVARMTRSSMLEVVDQDFVRTARAKGLKESAVIYK 240 D + + HLVLP+I L T MAI+ARMTRSSMLEV+ D++RT RAKG + VIYK Sbjct: 190 DFERTLTILKHLVLPSIALGTIPMAIIARMTRSSMLEVMKSDYIRTVRAKGSGQFLVIYK 249 Query: 241 HALVNALIPTLTVLGLQFGYLMGGAVITETIFSWPGIGGYVTDSILAADYAPIQAFTLVS 300 HAL NA+IP +TV+GLQ G L+GGA++TETIFSWPGIG YV ++I DY IQ+ LV Sbjct: 250 HALKNAIIPVITVIGLQTGVLLGGAILTETIFSWPGIGRYVYEAISFRDYPVIQSGILVI 309 Query: 301 AILYCGINLAVDLIYGLIDPRIRY 324 A L+ INL VD++Y IDPRI Y Sbjct: 310 AFLFVIINLIVDILYKKIDPRINY 333 >ref|NP_223005.1| DIPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN [Helicobacter pylori J99] pir||G71951 dipeptide transport system permease protein - Helicobacter pylori (strain J99) gb|AAD05865.1| DIPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN [Helicobacter pylori J99] Length = 334 Score = 257 bits (657), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 135/322 (41%), Positives = 200/322 (62%), Gaps = 2/322 (0%) Query: 2 IPALLGIIVITFILSRVLPGDPAIMLAGEQAPEETVNKIRQDMGLDKPLYIQFFSYFGQL 61 IP L G+ +I F++ ++PGDPA+++ GE+A + ++ +R+ GL+KPL Q+F + + Sbjct: 13 IPTLFGVSIIVFMMVHLVPGDPALVILGEKANQAAIDALREQFGLNKPLIEQYFFFINNV 72 Query: 62 FQGNIGYAYHTGHSVASDLATRFPXXXXXXXXXXXXXXXXXXXXXXXXXTRKESVLDHIS 121 GN G + TG V + RFP ++ S+ D+ S Sbjct: 73 LHGNFGTSIMTGEPVMHEFWQRFPATVELALIALFMALVLGISVGVLAAIKRYSMFDYSS 132 Query: 122 RVFSLIGACVPIFWLGLMFIYIFYSILGWAPAPMGRISGDLNPPSHITGLYVLDSILSGD 181 F+L G +P+FWLGLM IYIF LGW P GR+S D+ TGLY++DS+++GD Sbjct: 133 MTFALAGISMPVFWLGLMLIYIFSVQLGWLPV-FGRLS-DVYYLDGPTGLYLIDSLIAGD 190 Query: 182 MVALKSSIVHLVLPAICLSTGTMAIVARMTRSSMLEVVDQDFVRTARAKGLKESAVIYKH 241 A +I HL+LP+I L+T + A++ARMTR+SM EV +D+VRTA+AKG VI+ H Sbjct: 191 YGAFVDTIKHLILPSIVLATVSTAVIARMTRASMAEVSKEDYVRTAKAKGCSSFRVIFVH 250 Query: 242 ALVNALIPTLTVLGLQFGYLMGGAVITETIFSWPGIGGYVTDSILAADYAPIQAFTLVSA 301 L NALIP T+ GL L+GG++ITET+FSWPGIG ++ +++ D+ IQ+ +L+ A Sbjct: 251 TLRNALIPVTTIAGLMLAGLLGGSMITETVFSWPGIGKWIVNALNQRDFPIIQSMSLIIA 310 Query: 302 ILYCGINLAVDLIYGLIDPRIR 323 ++Y G NL VD++Y IDPRIR Sbjct: 311 MMYIGANLLVDVLYAFIDPRIR 332 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.326 0.143 0.429 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 417,804,396 Number of extensions: 15495374 Number of successful extensions: 56702 Number of sequences better than 1.0e-05: 1405 Number of HSP's gapped: 55088 Number of HSP's successfully gapped: 1509 Length of query: 325 Length of database: 757,237,578 Length adjustment: 126 Effective length of query: 199 Effective length of database: 415,135,104 Effective search space: 82611885696 Effective search space used: 82611885696 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 126 (53.1 bits)