BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0386.0035.p (219 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_691464.1| peptidoglycan hydrolase [Oceanobacillus iheyens... 157 2e-37 ref|NP_294382.1| frnE protein [Deinococcus radiodurans] >gi|7471... 153 2e-36 ref|ZP_00118638.1| COG2761: Predicted dithiol-disulfide isomeras... 149 3e-35 ref|NP_601765.1| predicted dithiol-disulfide isomerase [Coryneba... 145 6e-34 emb|CAF21228.1| Predicted dithiol-disulfide isomerase [Corynebac... 145 7e-34 >ref|NP_691464.1| peptidoglycan hydrolase [Oceanobacillus iheyensis HTE831] dbj|BAC12499.1| peptidoglycan hydrolase (DL-endopeptidase II family) (cell wall-binding protein) [Oceanobacillus iheyensis HTE831] Length = 238 Score = 157 bits (397), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 80/198 (40%), Positives = 115/198 (58%), Gaps = 3/198 (1%) Query: 2 IGKRKFENALGMFTMKDKVDVVYRSYQLDPNAENRTLSN--EQLAQEKGMNVEQLKAKQA 59 IGKR+ E AL F ++V + Y+SYQLDPNA++ N + ++ KGM ++Q+K Sbjct: 16 IGKRRLEKALDHFEQSNEVTIEYKSYQLDPNAKHIPGKNFYDTFSELKGMPLDQVKNMNQ 75 Query: 60 HVANMIKKEAGFDVSYDQVVIANTFDGHRLVHFADKAGKGAELTERLFRAYLSQRMNIAD 119 V E G D ++D + +NTFD HR+ A K KG E+TER AY ++ ++D Sbjct: 76 QVKEQ-ASEIGLDYNFDDMKYSNTFDAHRVAKLATKQNKGKEITERFLHAYFTESELLSD 134 Query: 120 HNVLVALGSEAGLNEQYVAEMLKSDAYKDSVKADIAEARNLNISSLPTFVFNNKYVISGA 179 H L+ L E GL V E+L ++ + + V DI AR + + +P FVFN KY +SGA Sbjct: 135 HQTLIRLAEEVGLTPSEVEEVLNTEKFTNRVNEDIDIARQIGVQGVPFFVFNEKYAVSGA 194 Query: 180 QSEEVFLNALNSIWEKEK 197 Q EEVF L +WE+EK Sbjct: 195 QPEEVFHEVLTKVWEEEK 212 >ref|NP_294382.1| frnE protein [Deinococcus radiodurans] pir||E75491 frnE protein - Deinococcus radiodurans (strain R1) gb|AAF10238.1| frnE protein [Deinococcus radiodurans] Length = 252 Score = 153 bits (387), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 82/219 (37%), Positives = 129/219 (58%), Gaps = 4/219 (1%) Query: 2 IGKRKFENALGMFTMKDKVDVVYRSYQLDPNAE--NRTLSNEQLAQEKGMNVEQLKAKQA 59 IGKR+FE+ALG F +D+V+VV+ S++LDP+A N + LA + ++ Q + Sbjct: 27 IGKRRFESALGQFPQRDQVEVVWHSFELDPSARPLNPIAMRDGLAMKYSISPAQAQGSLD 86 Query: 60 HVANMIKKEAGFDVSYDQVVIANTFDGHRLVHFADKAGKGAELTERLFRAYLSQRMNIAD 119 H+ +E G + +D+V +ANTF H+L+H+A + G+G + ERL RAY+S+ N+ D Sbjct: 87 HMTQTAAQE-GLEYHFDRVKLANTFLAHQLIHYAAEQGQGDAMKERLLRAYMSEGQNVND 145 Query: 120 HNVLVALGSEAGLNEQYVAEMLKSDAYKDSVKADIAEARNLNISSLPTFVFNNKYVISGA 179 + L L +E GL+ L++ Y +V+ D A+A+ L I+ +P FV KY +SGA Sbjct: 146 LDTLQKLAAEVGLDAGAARAALEAGTYAQAVRYDEAQAQQLGITGVPFFVLGGKYGVSGA 205 Query: 180 QSEEVFLNALNSIWEKEKVLQELEKTEQSSGEDGCEVGQ 218 Q+ E L AL+ +W E+ L Q + +GCE GQ Sbjct: 206 QAPETLLGALSQVW-AEQHPAPLTMLGQDAPAEGCEDGQ 243 >ref|ZP_00118638.1| COG2761: Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Cytophaga hutchinsonii] Length = 259 Score = 149 bits (377), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 84/222 (37%), Positives = 119/222 (53%), Gaps = 9/222 (4%) Query: 2 IGKRKFENALGMFTMKDKVDVVYRSYQLDPNAENRTLSNEQ----LAQEKGMNVEQLKAK 57 IGKR +E L F + ++++++S+QLDPN T E LA+ KGM+ EQ Sbjct: 39 IGKRNYEAGLKQFADSNNIEIIWKSFQLDPNIPQDTAVTENVYQYLAERKGMSYEQSVQM 98 Query: 58 QAHVANMIKKEAGFDVSYDQVVIANTFDGHRLVHFADKAGKGAELTERLFRAYLSQRMNI 117 V KK AG D ++D+ VIAN+F+ HR++ A G ERLF AY ++ N+ Sbjct: 99 HDSVVATAKK-AGLDYNFDKAVIANSFNAHRMIQLAKTKDLGDAAEERLFYAYFTEGKNV 157 Query: 118 ADHNVLVALGSEAGLNEQYVAEMLKSDAYKDSVKADIAEARNLNISSLPTFVFNNKYVIS 177 + VL+ LG + GL E V L D Y V+ D+ EA++L + +P FVF+ KY +S Sbjct: 158 GNSYVLIELGKDIGLTEAEVQTALTDDTYAYKVRQDVEEAQHLGVRGVPFFVFDRKYAVS 217 Query: 178 GAQSEEVFLNALN---SIWEKEKVLQELEKTE-QSSGEDGCE 215 GAQ + FL L S W KE E +E S DGC+ Sbjct: 218 GAQPPQAFLETLEKSFSEWRKEHPASPFEVSEGPSCSVDGCD 259 >ref|NP_601765.1| predicted dithiol-disulfide isomerase [Corynebacterium glutamicum ATCC 13032] dbj|BAB99960.1| Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Corynebacterium glutamicum ATCC 13032] Length = 245 Score = 145 bits (366), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 80/218 (36%), Positives = 122/218 (55%), Gaps = 7/218 (3%) Query: 2 IGKRKFENALGMFTMKDKVDVVYRSYQLDPNAENRTLSN--EQLAQEKGMNVEQLKAKQA 59 IGK++ ++AL F +++V Y+S++L P E L + E LA KGM++EQ + Sbjct: 26 IGKKRLDDALSTFDQAGRIEVEYKSFELMPGLETHPLRSDVEYLADAKGMSLEQARQMNG 85 Query: 60 HVANMIKKEAGFDVSYDQVVIANTFDGHRLVHFADKAGKGAELTERLFRAYLSQRMNIAD 119 V M + G +++ D+ + ANT + HRL HFA GK E+ + LF+A+ N+ D Sbjct: 86 QVQAMAQA-TGLEMNPDETIAANTINAHRLTHFAKAHGKQQEVAQELFKAHFVDGKNVDD 144 Query: 120 HNVLVALGSEAGLNEQYVAEMLKSDAYKDSVKADIAEARNLNISSLPTFVFNNKYVISGA 179 +VLV++ +E GL+ E L+SD Y + V+ D+ EAR L + +P FVF+ KY I+GA Sbjct: 145 LDVLVSIAAEVGLDASAAREALESDVYTNEVQQDVHEARQLGVQGVPFFVFDRKYAINGA 204 Query: 180 QSEEVFLNALNSI---WEKEKVLQELEKTE-QSSGEDG 213 Q EEVF + W E + E + QS DG Sbjct: 205 QQEEVFTGTVEKAFEEWAAENPVSPFEVIDGQSCSVDG 242 >emb|CAF21228.1| Predicted dithiol-disulfide isomerase [Corynebacterium glutamicum ATCC 13032] Length = 266 Score = 145 bits (366), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 80/218 (36%), Positives = 122/218 (55%), Gaps = 7/218 (3%) Query: 2 IGKRKFENALGMFTMKDKVDVVYRSYQLDPNAENRTLSN--EQLAQEKGMNVEQLKAKQA 59 IGK++ ++AL F +++V Y+S++L P E L + E LA KGM++EQ + Sbjct: 47 IGKKRLDDALSTFDQAGRIEVEYKSFELMPGLETHPLRSDVEYLADAKGMSLEQARQMNG 106 Query: 60 HVANMIKKEAGFDVSYDQVVIANTFDGHRLVHFADKAGKGAELTERLFRAYLSQRMNIAD 119 V M + G +++ D+ + ANT + HRL HFA GK E+ + LF+A+ N+ D Sbjct: 107 QVQAMAQA-TGLEMNPDETIAANTINAHRLTHFAKAHGKQQEVAQELFKAHFVDGKNVDD 165 Query: 120 HNVLVALGSEAGLNEQYVAEMLKSDAYKDSVKADIAEARNLNISSLPTFVFNNKYVISGA 179 +VLV++ +E GL+ E L+SD Y + V+ D+ EAR L + +P FVF+ KY I+GA Sbjct: 166 LDVLVSIAAEVGLDASAAREALESDVYTNEVQQDVHEARQLGVQGVPFFVFDRKYAINGA 225 Query: 180 QSEEVFLNALNSI---WEKEKVLQELEKTE-QSSGEDG 213 Q EEVF + W E + E + QS DG Sbjct: 226 QQEEVFTGTVEKAFEEWAAENPVSPFEVIDGQSCSVDG 263 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.313 0.129 0.354 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 296,233,049 Number of extensions: 11342200 Number of successful extensions: 31345 Number of sequences better than 1.0e-05: 92 Number of HSP's gapped: 31296 Number of HSP's successfully gapped: 92 Length of query: 219 Length of database: 757,237,578 Length adjustment: 121 Effective length of query: 98 Effective length of database: 428,710,599 Effective search space: 42013638702 Effective search space used: 42013638702 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 123 (52.0 bits)