BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0386.0025.p (138 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_978868.1| conserved hypothetical protein [Bacillus cereus... 132 2e-30 ref|NP_656420.1| hypothetical protein predicted by GeneMark [Bac... 130 1e-29 ref|NP_242758.1| BH1892~unknown conserved protein in B. subtilis... 110 9e-24 ref|NP_691266.1| hypothetical protein OB0345 [Oceanobacillus ihe... 86 2e-16 emb|CAB07966.1| unknown [Bacillus subtilis] 76 2e-13 >ref|NP_978868.1| conserved hypothetical protein [Bacillus cereus ATCC 10987] gb|AAS41476.1| conserved hypothetical protein [Bacillus cereus ATCC 10987] Length = 152 Score = 132 bits (333), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 65/131 (49%), Positives = 91/131 (69%), Gaps = 4/131 (3%) Query: 5 ELIKRRTGGPGSIYYTLFHIVECEYSWISALQGKPMPEEPPFEDYIGVQKIRDYSARCHA 64 EL+++R GG GSI TLFHIV+ EYSWI+ALQ K P F++Y +QK++ S Sbjct: 26 ELVRKRVGGVGSILETLFHIVDVEYSWINALQEKE-DGAPQFKEYQSIQKVKALSDLYKR 84 Query: 65 EIAPFIYSWDSSMETRILSDQNAAGEWESFKYGEIMRHVLAHEIHHFGQLSIWSRELGKQ 124 E+ F+ W +++E ++L A+ +++ YGE++RHV+ HEIHH GQLSIW+REL Q Sbjct: 85 EVEEFLQVWSANLECKLL---KASWTDKTYTYGEVLRHVIVHEIHHIGQLSIWARELNLQ 141 Query: 125 PVTANLIRRGL 135 PV+ANLI RGL Sbjct: 142 PVSANLIGRGL 152 >ref|NP_656420.1| hypothetical protein predicted by GeneMark [Bacillus anthracis A2012] ref|NP_844926.1| conserved hypothetical protein [Bacillus anthracis str. Ames] gb|AAP26412.1| conserved hypothetical protein [Bacillus anthracis str. Ames] Length = 152 Score = 130 bits (327), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 65/135 (48%), Positives = 93/135 (68%), Gaps = 4/135 (2%) Query: 1 VDETELIKRRTGGPGSIYYTLFHIVECEYSWISALQGKPMPEEPPFEDYIGVQKIRDYSA 60 + + EL+++R GG GSI TLFHIV+ EYSWI+ALQ K P F++Y +QK++ S Sbjct: 22 LSKEELLRKRIGGVGSILETLFHIVDVEYSWINALQEKE-DCVPQFKEYQSIQKVKALSN 80 Query: 61 RCHAEIAPFIYSWDSSMETRILSDQNAAGEWESFKYGEIMRHVLAHEIHHFGQLSIWSRE 120 E+ F+ W +++E +IL A+ +++ YGE++RHV+ HEIHH GQLSIW+RE Sbjct: 81 LYKRELEDFLQVWSANLECKILK---ASWTDKTYTYGEVLRHVIVHEIHHIGQLSIWARE 137 Query: 121 LGKQPVTANLIRRGL 135 L +PV+ANLI RGL Sbjct: 138 LNLRPVSANLIGRGL 152 >ref|NP_242758.1| BH1892~unknown conserved protein in B. subtilis [Bacillus halodurans] pir||D83886 hypothetical protein BH1892 [imported] - Bacillus halodurans (strain C-125) dbj|BAB05611.1| BH1892~unknown conserved protein in B. subtilis [Bacillus halodurans] Length = 150 Score = 110 bits (275), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 58/132 (43%), Positives = 82/132 (62%), Gaps = 10/132 (7%) Query: 5 ELIKRRTGGPGSIYYTLFHIVECEYSWISALQGKPMPEEPPFEDYIGVQK---IRDYSAR 61 +L R GG GSI TLFHIV+ E+SWI A++G E+ DY ++ IR +S Sbjct: 26 QLTAERIGGVGSILQTLFHIVDVEHSWIRAMKG----EKDLILDYESMKSLTYIRQHSEA 81 Query: 62 CHAEIAPFIYSWDSSMETRILSDQNAAGEWESFKYGEIMRHVLAHEIHHFGQLSIWSREL 121 C EI F+ +W E ++ G +++ GEI+RHV+AHEIHH GQLS+W+REL Sbjct: 82 CQPEIYEFLQTWTDEQEEDLVDPHWLEG---TYRKGEILRHVIAHEIHHMGQLSVWAREL 138 Query: 122 GKQPVTANLIRR 133 G++P++AN I R Sbjct: 139 GREPISANYIDR 150 >ref|NP_691266.1| hypothetical protein OB0345 [Oceanobacillus iheyensis HTE831] dbj|BAC12301.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831] Length = 160 Score = 86.3 bits (212), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 56/139 (40%), Positives = 83/139 (59%), Gaps = 12/139 (8%) Query: 1 VDETELIKRRTGGPGSIYYTLFHIVECEYSWISALQGKPMPEEPP--FEDYIGVQKIRDY 58 + E L K+R GG SI+YTLFHI+E EYSWI A+Q K ++ P ++DY + ++ Sbjct: 22 IPEEALFKKRVGGVHSIHYTLFHIIEVEYSWIRAIQEK---QDVPIDYKDYPSIASLQSL 78 Query: 59 SARCHAEIAPFIYSWDSSMETRILSDQNAAGEWE--SFKYGEIMRHVLAHEIHHFGQLSI 116 S C EI F + + S++ WE SF +I+ HV+ HE+HH GQLSI Sbjct: 79 SRECRDEIVSFF-----ADNSNFNSNKQVRPAWEETSFSIQDILHHVIVHEVHHIGQLSI 133 Query: 117 WSRELGKQPVTANLIRRGL 135 W+RE+G +P++A+ I R + Sbjct: 134 WAREVGVEPISASFIDRDM 152 >emb|CAB07966.1| unknown [Bacillus subtilis] Length = 169 Score = 76.3 bits (186), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 55/134 (41%), Positives = 78/134 (58%), Gaps = 9/134 (6%) Query: 5 ELIKRRTGGPGSIYYTLFHIVECEYSWISALQGKPMPEEPPFEDYIGVQKIRDYSARCHA 64 EL+K R GG +I YTLFHI++ EYSWI A+QGK F DY + K++ S Sbjct: 36 ELLKNRLGGVENILYTLFHIIDVEYSWIRAIQGKE-DIAVQFADYQTLNKVKSLSNTFRT 94 Query: 65 EIAPFIYSWDSSMETRILSDQNAAGEWES---FKYGEIMRHVLAHEIHHFGQLSIWSREL 121 EI + + + + D+ + WE+ + EI+ H++AHEIHH GQLS+W+REL Sbjct: 95 EIIDVLQT-----HSDQIKDELVSVPWETGVLYTRDEILHHIIAHEIHHIGQLSVWAREL 149 Query: 122 GKQPVTANLIRRGL 135 PV+A+ I R L Sbjct: 150 KLSPVSASFIGRTL 163 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.320 0.138 0.436 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 228,889,364 Number of extensions: 8782949 Number of successful extensions: 17467 Number of sequences better than 1.0e-05: 6 Number of HSP's gapped: 17463 Number of HSP's successfully gapped: 6 Length of query: 138 Length of database: 757,237,578 Length adjustment: 99 Effective length of query: 39 Effective length of database: 488,442,777 Effective search space: 19049268303 Effective search space used: 19049268303 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 120 (50.8 bits)