BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0386.0017.p (218 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_833810.1| Stage II sporulation protein M [Bacillus cereus... 131 1e-29 ref|NP_980454.1| stage II sporulation protein M [Bacillus cereus... 130 2e-29 ref|NP_658132.1| hypothetical protein predicted by GeneMark [Bac... 129 6e-29 ref|NP_242392.1| stage II sporulation protein M [Bacillus halodu... 118 8e-26 ref|NP_390234.1| spoIIM [Bacillus subtilis] >gi|586019|sp|P37873... 107 2e-22 >ref|NP_833810.1| Stage II sporulation protein M [Bacillus cereus ATCC 14579] gb|AAP11011.1| Stage II sporulation protein M [Bacillus cereus ATCC 14579] Length = 215 Score = 131 bits (329), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 73/202 (36%), Positives = 114/202 (56%) Query: 16 MKEQTPLYXXXXXXXXXXXXXXXXXXSALTLDQQQELGDYLGNFFVTVDQQGLPAAPDSY 75 ++E + LY ++L ++Q+Q+L YL FF V + A + + Sbjct: 14 IQENSSLYIFNAVLLLMGVIFGAILVNSLQINQKQDLSFYLQRFFGQVSKGEFAIAGEMF 73 Query: 76 WDIAALNLKWIALIWILGLSVIGLPGILILDFLKGVLIGFTVGCMVSEYSWHGMLFALVS 135 + LK+I IWILG+S+IGLP I IL F+KGV++GFTVG +VS++ W+G+L A VS Sbjct: 74 RESYFSQLKYIGFIWILGISIIGLPLIFILLFVKGVVVGFTVGFLVSQHGWNGLLLAFVS 133 Query: 136 VAPHNLVLIPVLLVGSAAAIAFSLLMIRSRVLGQRRSPVTRPFVMYTVLSFGLAVLVLGI 195 V P NL++IPV LV + A +FSL MIR + + + P+ + YT + V++ Sbjct: 134 VLPQNLIIIPVFLVMTTIAASFSLRMIRHQFIRKITEPLLPLLIRYTCFFLVIGVVLALA 193 Query: 196 SGFEAWVTPTMMRWVTPLLVSK 217 S EA+ +P +M+ V + K Sbjct: 194 SSVEAYASPVLMKEVVEAINKK 215 >ref|NP_980454.1| stage II sporulation protein M [Bacillus cereus ATCC 10987] gb|AAS43062.1| stage II sporulation protein M [Bacillus cereus ATCC 10987] Length = 215 Score = 130 bits (327), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 72/197 (36%), Positives = 111/197 (56%) Query: 16 MKEQTPLYXXXXXXXXXXXXXXXXXXSALTLDQQQELGDYLGNFFVTVDQQGLPAAPDSY 75 ++E + LY ++L L+Q+Q+L YL FF V + A + + Sbjct: 14 IQENSSLYIFNAVLLLMGVIFGAILVNSLQLNQKQDLSFYLQRFFGQVSKGEFAIAGEMF 73 Query: 76 WDIAALNLKWIALIWILGLSVIGLPGILILDFLKGVLIGFTVGCMVSEYSWHGMLFALVS 135 + LK+I IWILG+S+IGLP I IL F KGV++GFTVG +VS++ W+G+L A VS Sbjct: 74 RESYFSQLKYIGFIWILGISIIGLPLIFILLFAKGVVVGFTVGFLVSQHGWNGLLLAFVS 133 Query: 136 VAPHNLVLIPVLLVGSAAAIAFSLLMIRSRVLGQRRSPVTRPFVMYTVLSFGLAVLVLGI 195 V P NL++IPV LV + A++FSL MIR + + + P+ + YT + ++ Sbjct: 134 VLPQNLIIIPVFLVMTTIAVSFSLRMIRHQFIRKITEPLLPLLIRYTCFFLVIGAVLALA 193 Query: 196 SGFEAWVTPTMMRWVTP 212 S EA+ +P +M+ V Sbjct: 194 SSVEAYASPVLMKEVVE 210 >ref|NP_658132.1| hypothetical protein predicted by GeneMark [Bacillus anthracis A2012] ref|NP_846547.1| stage II sporulation protein M [Bacillus anthracis str. Ames] gb|AAP28033.1| stage II sporulation protein M [Bacillus anthracis str. Ames] Length = 215 Score = 129 bits (323), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 72/197 (36%), Positives = 110/197 (55%) Query: 16 MKEQTPLYXXXXXXXXXXXXXXXXXXSALTLDQQQELGDYLGNFFVTVDQQGLPAAPDSY 75 ++E + LY ++L L+Q+Q+L YL FF V + A + + Sbjct: 14 IQENSSLYIFNAVLLLMGVIFGAILVNSLQLNQKQDLSFYLQRFFGQVSKGEFAIAGEMF 73 Query: 76 WDIAALNLKWIALIWILGLSVIGLPGILILDFLKGVLIGFTVGCMVSEYSWHGMLFALVS 135 + LK+I IWILG+S+IGLP I IL F KGV++GFTVG +VS++ W+G+L A VS Sbjct: 74 RESYFSQLKYIGFIWILGISIIGLPLIFILLFAKGVVVGFTVGFLVSQHGWNGLLLAFVS 133 Query: 136 VAPHNLVLIPVLLVGSAAAIAFSLLMIRSRVLGQRRSPVTRPFVMYTVLSFGLAVLVLGI 195 V P NL++IPV LV + A +FSL MIR + + + P+ + YT + ++ Sbjct: 134 VLPQNLIIIPVFLVMTTIAASFSLRMIRHQFIRKITEPLLPLLIRYTCFFLVIGAVLALA 193 Query: 196 SGFEAWVTPTMMRWVTP 212 S EA+ +P +M+ V Sbjct: 194 SSVEAYASPVLMKEVVE 210 >ref|NP_242392.1| stage II sporulation protein M [Bacillus halodurans] pir||F83840 stage II sporulation protein M spoIIM [imported] - Bacillus halodurans (strain C-125) dbj|BAB05245.1| stage II sporulation protein M [Bacillus halodurans] Length = 217 Score = 118 bits (296), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 64/169 (37%), Positives = 102/169 (60%) Query: 42 SALTLDQQQELGDYLGNFFVTVDQQGLPAAPDSYWDIAALNLKWIALIWILGLSVIGLPG 101 ++L++ Q+ +L YL FF V + + + + + K+ L+WILGLS+IGLP Sbjct: 44 NSLSITQKHDLYMYLQQFFGQVSDGHVATSTEMFKQSFSHYAKYFGLMWILGLSIIGLPV 103 Query: 102 ILILDFLKGVLIGFTVGCMVSEYSWHGMLFALVSVAPHNLVLIPVLLVGSAAAIAFSLLM 161 IL+L FLKGV+IGFTVG +VS+ +G + VSV P NL+L+P ++ A+++F L M Sbjct: 104 ILVLLFLKGVVIGFTVGFLVSQMGMNGFFLSFVSVLPQNLILVPAFIIIGTASVSFCLKM 163 Query: 162 IRSRVLGQRRSPVTRPFVMYTVLSFGLAVLVLGISGFEAWVTPTMMRWV 210 IR++ + P F+ Y++L + L SG EA+++P +MR V Sbjct: 164 IRNQFVKGINEPFFPQFLQYSMLILCVGASSLIASGIEAYMSPLLMRMV 212 >ref|NP_390234.1| spoIIM [Bacillus subtilis] sp|P37873|SP2M_BACSU Stage II sporulation protein M pir||A47581 septal cell wall dissolution factor spoIIM - Bacillus subtilis gb|AAA75553.1| spoIIM gene product dbj|BAA12647.1| SpoIIM [Bacillus subtilis] emb|CAB14285.1| spoIIM [Bacillus subtilis subsp. subtilis str. 168] Length = 214 Score = 107 bits (268), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 70/201 (34%), Positives = 107/201 (53%), Gaps = 5/201 (2%) Query: 17 KEQTPLYXXXXXXXXXXXXXXXXXXSALTLDQQQELGDYLGNFFVTVDQQGLPAAPDSYW 76 K+ LY +++T+ Q+++L YL FF + ++ D + Sbjct: 15 KDHLSLYIFVSVLFFMGVIFGAIIVNSMTISQKEDLYYYLSQFFGQLSDGKQASSADMFG 74 Query: 77 DIAALNLKWIALIWILGLSVIGLPGILILDFLKGVLIGFTVGCMVSEYSWHGMLFALVSV 136 N K++ L+WILG+SVIG+P I I+ FLKG+++GFTVG +V++ G + VSV Sbjct: 75 QSIFHNAKYLGLMWILGISVIGMPIIFIMIFLKGIVVGFTVGFLVNQMGVSGFFLSFVSV 134 Query: 137 APHNLVLIPVLLVGSAAAIAFSLLMIRSRVLGQRRSPVTRPFVMYTVLSFGLAV---LVL 193 P N++LIP L+ AIAFSL +IR L +RS P + +F L V L L Sbjct: 135 LPQNVLLIPAYLIMGTCAIAFSLKLIRQ--LFVKRSLHDAPIQWFGRYAFVLLVILFLAL 192 Query: 194 GISGFEAWVTPTMMRWVTPLL 214 S FEA+++P +M +T L Sbjct: 193 ISSLFEAYLSPVLMEKLTSRL 213 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.327 0.141 0.437 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 293,557,675 Number of extensions: 10910178 Number of successful extensions: 38392 Number of sequences better than 1.0e-05: 12 Number of HSP's gapped: 38392 Number of HSP's successfully gapped: 12 Length of query: 218 Length of database: 757,237,578 Length adjustment: 121 Effective length of query: 97 Effective length of database: 428,710,599 Effective search space: 41584928103 Effective search space used: 41584928103 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 123 (52.0 bits)