BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0386.0014.p (201 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|AAM98772.1| methanol dehydrogenase activator protein [Bacillu... 193 2e-48 ref|NP_471413.1| similar to unknown proteins [Listeria innocua] ... 189 4e-47 ref|NP_465489.1| similar to unknown proteins [Listeria monocytog... 186 2e-46 ref|NP_658134.1| NUDIX, MutT-like domain [Bacillus anthracis A20... 178 7e-44 ref|NP_833812.1| ADP-ribose pyrophosphatase [Bacillus cereus ATC... 176 3e-43 >gb|AAM98772.1| methanol dehydrogenase activator protein [Bacillus methanolicus] Length = 185 Score = 193 bits (490), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 95/174 (54%), Positives = 132/174 (75%), Gaps = 3/174 (1%) Query: 23 LDEETLSTKPIFVGKIISLQVDTVKLPDGNTATREVVKHPGAVAVLAL-NQGKMLVVEQY 81 +E+T+ T+ IF G+++ LQVD V+LP+G T+ RE+V+HPGAVAV+A+ N+ K+++VEQY Sbjct: 5 FEEKTIKTEQIFSGRVVKLQVDDVELPNGQTSKREIVRHPGAVAVIAITNENKIVMVEQY 64 Query: 82 RQPMHRTEVEIPAGKLDPGEDPLAAAGRELQEETGFHSGELKLLKSFYTSPGFADEIIHL 141 R+P+ ++ VEIPAGKL+ GEDP A REL+EETG+ +++ L SF TSPGFADEIIHL Sbjct: 65 RKPLEKSIVEIPAGKLEKGEDPRVTALRELEEETGYECEQMEWLISFATSPGFADEIIHL 124 Query: 142 YVTDNAQPGDMA--LDEDEFLEVSELTLEEAYQYIADGRIADAKTMMAVYAWHL 193 YV + A LDEDEF+++ ELTL+EA QYI + RI D+KT++AV L Sbjct: 125 YVAKGLSKKENAAGLDEDEFVDLIELTLDEALQYIKEKRIYDSKTVIAVQYLQL 178 >ref|NP_471413.1| similar to unknown proteins [Listeria innocua] pir||AE1692 hypothetical protein homolog lin2079 [imported] - Listeria innocua (strain Clip11262) emb|CAC97309.1| lin2079 [Listeria innocua] Length = 185 Score = 189 bits (479), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 92/175 (52%), Positives = 128/175 (73%), Gaps = 3/175 (1%) Query: 22 ALDEETLSTKPIFVGKIISLQVDTVKLPDGNTATREVVKHPGAVAVLALN-QGKMLVVEQ 80 +L+E+TL T+ IF G +I LQVD V+LP+G + RE+VKHPGAVA++ + G+M +VEQ Sbjct: 3 SLEEKTLHTEKIFSGNVIELQVDDVELPNGEKSKREIVKHPGAVAIIPFSADGRMYLVEQ 62 Query: 81 YRQPMHRTEVEIPAGKLDPGEDPLAAAGRELQEETGFHSGELKLLKSFYTSPGFADEIIH 140 +R+P+ + +EIPAGK++PGEDPL A REL+EETGF S +L L SFYTSPGFA E++H Sbjct: 63 FRKPLEKNIIEIPAGKMEPGEDPLVTAKRELEEETGFQSDDLTYLTSFYTSPGFASELLH 122 Query: 141 LYVTDNAQPGD--MALDEDEFLEVSELTLEEAYQYIADGRIADAKTMMAVYAWHL 193 +YV + + + +A D DEF+ + ++T+EEA Q IA I DAKTM A+ W L Sbjct: 123 IYVARDLRKMEHPLAQDADEFINLVKVTMEEAEQLIAQQFIHDAKTMYAIQYWKL 177 >ref|NP_465489.1| similar to unknown proteins [Listeria monocytogenes EGD-e] pir||AE1320 hypothetical protein lmo1965 [imported] - Listeria monocytogenes (strain EGD-e) emb|CAD00043.1| lmo1965 [Listeria monocytogenes] Length = 185 Score = 186 bits (473), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 94/175 (53%), Positives = 128/175 (73%), Gaps = 3/175 (1%) Query: 22 ALDEETLSTKPIFVGKIISLQVDTVKLPDGNTATREVVKHPGAVAVLALNQ-GKMLVVEQ 80 +L+E+TL T+ IF G II LQVD V+LP+G + RE+VKHPGAVA++ ++ G M +VEQ Sbjct: 3 SLEEKTLHTEQIFSGNIIELQVDDVELPNGEKSKREIVKHPGAVAIIPFSEDGGMYLVEQ 62 Query: 81 YRQPMHRTEVEIPAGKLDPGEDPLAAAGRELQEETGFHSGELKLLKSFYTSPGFADEIIH 140 YR+P+ +T +EIPAGK++PGEDPL A REL+EETGF S +L L SFYTSPGFA+E++H Sbjct: 63 YRKPLEKTIIEIPAGKMEPGEDPLVTARRELEEETGFQSDDLTYLTSFYTSPGFANELLH 122 Query: 141 LYVTDNAQPGD--MALDEDEFLEVSELTLEEAYQYIADGRIADAKTMMAVYAWHL 193 +YV + + + +A D DEF+ + ++T EEA Q I I DAKTM A+ W L Sbjct: 123 IYVARDLRKMEQPLAQDADEFINLVKVTPEEAEQLIEQQFIHDAKTMYAMQYWKL 177 >ref|NP_658134.1| NUDIX, MutT-like domain [Bacillus anthracis A2012] ref|NP_846549.1| mutT/nudix family protein [Bacillus anthracis str. Ames] gb|AAP28035.1| mutT/nudix family protein [Bacillus anthracis str. Ames] Length = 179 Score = 178 bits (451), Expect = 7e-44, Method: Compositional matrix adjust. Identities = 89/174 (51%), Positives = 125/174 (71%), Gaps = 3/174 (1%) Query: 23 LDEETLSTKPIFVGKIISLQVDTVKLPDGNTATREVVKHPGAVAVLAL-NQGKMLVVEQY 81 L E T+ T+PIF G++I ++VD V LP+G + RE+V HPGAVA++A+ ++GK+++VEQY Sbjct: 4 LAERTVKTEPIFDGRVIKVRVDDVVLPNGAMSKREIVNHPGAVAIIAITDEGKIVLVEQY 63 Query: 82 RQPMHRTEVEIPAGKLDPGEDPLAAAGRELQEETGFHSGELKLLKSFYTSPGFADEIIHL 141 R+ + + +EIPAGKL+PGE P A REL+EETG+ ++L+ SFYTSPGFADEI+++ Sbjct: 64 RKALEKAIIEIPAGKLEPGEKPEVTAVRELEEETGYVCENMELITSFYTSPGFADEILYV 123 Query: 142 YVTD--NAQPGDMALDEDEFLEVSELTLEEAYQYIADGRIADAKTMMAVYAWHL 193 Y + ALDEDEF+E+ E++LEEA + D RI DAKTM AV L Sbjct: 124 YKATGLTKKENKAALDEDEFVELMEVSLEEATTLMKDLRIHDAKTMFAVQYLQL 177 >ref|NP_833812.1| ADP-ribose pyrophosphatase [Bacillus cereus ATCC 14579] gb|AAP11013.1| ADP-ribose pyrophosphatase [Bacillus cereus ATCC 14579] Length = 179 Score = 176 bits (445), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 88/174 (50%), Positives = 124/174 (71%), Gaps = 3/174 (1%) Query: 23 LDEETLSTKPIFVGKIISLQVDTVKLPDGNTATREVVKHPGAVAVLAL-NQGKMLVVEQY 81 L E T+ T+PIF G++I ++VD V LP+G + RE+V HPGAVA++A+ ++GK+++VEQY Sbjct: 4 LAERTVKTEPIFDGRVIKVRVDDVVLPNGAMSKREIVNHPGAVAIIAITDEGKIVLVEQY 63 Query: 82 RQPMHRTEVEIPAGKLDPGEDPLAAAGRELQEETGFHSGELKLLKSFYTSPGFADEIIHL 141 R+ + + +EIPAGKL+PGE P A REL+EETG+ ++L+ SFYTSPGFADEI+++ Sbjct: 64 RKALEKAIIEIPAGKLEPGEKPEVTAVRELEEETGYVCENMELITSFYTSPGFADEILYV 123 Query: 142 YVTD--NAQPGDMALDEDEFLEVSELTLEEAYQYIADGRIADAKTMMAVYAWHL 193 Y + LDEDEF+E+ E++LEEA + D RI DAKTM AV L Sbjct: 124 YKATGLTRKENKAELDEDEFVELMEVSLEEAITLMKDLRIHDAKTMFAVQYLQL 177 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.315 0.133 0.385 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 304,553,495 Number of extensions: 12308160 Number of successful extensions: 24894 Number of sequences better than 1.0e-05: 348 Number of HSP's gapped: 24696 Number of HSP's successfully gapped: 348 Length of query: 201 Length of database: 757,237,578 Length adjustment: 120 Effective length of query: 81 Effective length of database: 431,425,698 Effective search space: 34945481538 Effective search space used: 34945481538 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 123 (52.0 bits)