BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0386.0007.p (71 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_390284.1| branched-chain alpha-keto acid dehydrogenase E1... 79 3e-14 ref|NP_658198.1| transket_pyr, Transketolase, pyridine binding d... 79 4e-14 ref|NP_833873.1| 2-oxoisovalerate dehydrogenase beta subunit [Ba... 79 4e-14 ref|NP_692786.1| branched-chain alpha-keto acid dehydrogenase E1... 77 9e-14 ref|NP_470746.1| similar to branched-chain alpha-keto acid dehyd... 77 1e-13 >ref|NP_390284.1| branched-chain alpha-keto acid dehydrogenase E1 (2-oxoisovalerate dehydrogenase beta subunit) [Bacillus subtilis] sp|P37941|ODBB_BACSU 2-oxoisovalerate dehydrogenase beta subunit (Branched-chain alpha-keto acid dehydrogenase E1 component beta chain) (BCKDH E1-beta) pir||D69593 3-methyl-2-oxobutanoate dehydrogenase (lipoamide) (EC 1.2.4.4) E1 beta chain bfmBAB - Bacillus subtilis gb|AAA22279.1| branched chain alpha-keto acid dehydrogenase E1-beta dbj|BAA12599.1| BfmBAB [Bacillus subtilis] emb|CAB14335.1| branched-chain alpha-keto acid dehydrogenase E1 subunit (2-oxoisovalerate dehydrogenase beta subunit) [Bacillus subtilis subsp. subtilis str. 168] Length = 327 Score = 79.3 bits (194), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 37/71 (52%), Positives = 47/71 (66%) Query: 1 VLIVHEDNKTXXXXXXXXXXXXXHCLFELDAPIFRLCGPDVPAMPISPPMEKFFMLSKDK 60 VL+V ED K HCLF+LDAPI RL GPD+PAMP +P MEK+FM++ DK Sbjct: 257 VLLVTEDTKEGSIMSEVAAIISEHCLFDLDAPIKRLAGPDIPAMPYAPTMEKYFMVNPDK 316 Query: 61 VKAEMLRLAQY 71 V+A M LA++ Sbjct: 317 VEAAMRELAEF 327 >ref|NP_658198.1| transket_pyr, Transketolase, pyridine binding domain [Bacillus anthracis A2012] ref|NP_846613.1| 3-methyl-2-oxobutanoate dehydrogenase, beta subunit [Bacillus anthracis str. Ames] ref|NP_980526.1| 3-methyl-2-oxobutanoate dehydrogenase, beta subunit [Bacillus cereus ATCC 10987] gb|AAP28099.1| 3-methyl-2-oxobutanoate dehydrogenase, beta subunit [Bacillus anthracis str. Ames] gb|AAS43134.1| 3-methyl-2-oxobutanoate dehydrogenase, beta subunit [Bacillus cereus ATCC 10987] Length = 327 Score = 78.6 bits (192), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 38/71 (53%), Positives = 47/71 (66%) Query: 1 VLIVHEDNKTXXXXXXXXXXXXXHCLFELDAPIFRLCGPDVPAMPISPPMEKFFMLSKDK 60 VL+V EDNK +CLF+LDAPI RL GPDVPAMP +P MEKFFM++ DK Sbjct: 257 VLLVTEDNKEGSIMSEVAAIIAENCLFDLDAPIARLAGPDVPAMPYAPTMEKFFMVNPDK 316 Query: 61 VKAEMLRLAQY 71 V+ M LA++ Sbjct: 317 VEKAMRELAEF 327 >ref|NP_833873.1| 2-oxoisovalerate dehydrogenase beta subunit [Bacillus cereus ATCC 14579] gb|AAP11074.1| 2-oxoisovalerate dehydrogenase beta subunit [Bacillus cereus ATCC 14579] Length = 327 Score = 78.6 bits (192), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 38/71 (53%), Positives = 47/71 (66%) Query: 1 VLIVHEDNKTXXXXXXXXXXXXXHCLFELDAPIFRLCGPDVPAMPISPPMEKFFMLSKDK 60 VL+V EDNK +CLF+LDAPI RL GPDVPAMP +P MEKFFM++ DK Sbjct: 257 VLLVTEDNKEGSIMSEVAAIIAENCLFDLDAPIARLAGPDVPAMPYAPTMEKFFMVNPDK 316 Query: 61 VKAEMLRLAQY 71 V+ M LA++ Sbjct: 317 VEKAMRELAEF 327 >ref|NP_692786.1| branched-chain alpha-keto acid dehydrogenase E1 beta chain [Oceanobacillus iheyensis HTE831] dbj|BAC13821.1| branched-chain alpha-keto acid dehydrogenase E1 beta chain (3-methyl-2-oxobutanoate dehydrogenase (lipoamide) ) [Oceanobacillus iheyensis HTE831] Length = 327 Score = 77.4 bits (189), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 36/71 (50%), Positives = 46/71 (64%) Query: 1 VLIVHEDNKTXXXXXXXXXXXXXHCLFELDAPIFRLCGPDVPAMPISPPMEKFFMLSKDK 60 VL++ EDNK CLF+LDAPI RL GPD+PAMP +P MEK+FM++ DK Sbjct: 257 VLLITEDNKEGSIIGEVAAIISESCLFDLDAPIQRLAGPDIPAMPYAPTMEKYFMVNPDK 316 Query: 61 VKAEMLRLAQY 71 V+ M LA+Y Sbjct: 317 VEKAMRELAEY 327 >ref|NP_470746.1| similar to branched-chain alpha-keto acid dehydrogenase E1 subunit (2-oxoisovalerate dehydrogenase beta subunit) [Listeria innocua] pir||AI1608 branched-chain alpha-keto acid dehydrogenase E1 chain (2-oxoisovalerate dehydrogenase beta chain) homolog BfmBAB [imported] - Listeria innocua (strain Clip11262) emb|CAC96641.1| BfmBAB [Listeria innocua] Length = 327 Score = 77.0 bits (188), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 37/71 (52%), Positives = 44/71 (61%) Query: 1 VLIVHEDNKTXXXXXXXXXXXXXHCLFELDAPIFRLCGPDVPAMPISPPMEKFFMLSKDK 60 VL+V EDNK HCLF+LDAPI RL GPD PAMP +P MEK FM++ DK Sbjct: 257 VLLVTEDNKQGSIISEVAAIISEHCLFDLDAPIARLAGPDTPAMPFAPTMEKHFMINPDK 316 Query: 61 VKAEMLRLAQY 71 V M LA++ Sbjct: 317 VADAMKELAEF 327 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.327 0.142 0.442 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 81,756,201 Number of extensions: 2042603 Number of successful extensions: 4648 Number of sequences better than 1.0e-05: 12 Number of HSP's gapped: 4649 Number of HSP's successfully gapped: 12 Length of query: 71 Length of database: 757,237,578 Length adjustment: 42 Effective length of query: 29 Effective length of database: 643,203,420 Effective search space: 18652899180 Effective search space used: 18652899180 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 120 (50.8 bits)