BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0385.0022.p (176 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_832862.1| Succinoglycan biosynthesis protein [Bacillus ce... 305 3e-82 ref|NP_656135.1| hypothetical protein predicted by GeneMark [Bac... 145 5e-34 ref|NP_832946.1| Succinoglycan biosynthesis protein [Bacillus ce... 102 3e-21 ref|NP_979589.1| erythromycin esterase, putative [Bacillus cereu... 100 2e-20 ref|NP_656136.1| hypothetical protein predicted by GeneMark [Bac... 86 5e-16 >ref|NP_832862.1| Succinoglycan biosynthesis protein [Bacillus cereus ATCC 14579] gb|AAP10063.1| Succinoglycan biosynthesis protein [Bacillus cereus ATCC 14579] Length = 443 Score = 305 bits (782), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 141/176 (80%), Positives = 160/176 (90%) Query: 1 MVAAYPDNLKDFYLKHDIAMYENAKWTEEHVGKTIVWGHNGHVSKTNMIPFVYPKVAGQY 60 M+A PD DFYLKHDIAMYENAKWTEEH+GKTIVWGHNGHVSKTNM+ F+YPKVAGQ+ Sbjct: 268 MLATPPDKPADFYLKHDIAMYENAKWTEEHLGKTIVWGHNGHVSKTNMLSFIYPKVAGQH 327 Query: 61 LAEHYGKRYVSIGTSVYEGRYNVYNSKQEFGPFGTLKLDDPSSFNYSFGQVHYDQFFVDL 120 LAE+YGKRYVSIGTSVYEG+YNV NS EFGP+GTLK DDP+S+NY FGQV DQFF+DL Sbjct: 328 LAEYYGKRYVSIGTSVYEGQYNVKNSDGEFGPYGTLKSDDPNSYNYIFGQVKKDQFFIDL 387 Query: 121 RKASGVTKTWLNEQHPIFAGITTVGPDIPTTIDLSLGKTFDIIVQIQKVNPSQLNR 176 RKA+GVTKTWLNEQHPIFAGITT GPDIP T+D+SLGK FDI+VQIQKV+PSQ+++ Sbjct: 388 RKANGVTKTWLNEQHPIFAGITTEGPDIPKTVDISLGKAFDILVQIQKVSPSQVHQ 443 >ref|NP_656135.1| hypothetical protein predicted by GeneMark [Bacillus anthracis A2012] ref|NP_844658.1| conserved domain protein [Bacillus anthracis str. Ames] gb|AAP26144.1| conserved domain protein [Bacillus anthracis str. Ames] Length = 345 Score = 145 bits (365), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 65/78 (83%), Positives = 72/78 (92%) Query: 1 MVAAYPDNLKDFYLKHDIAMYENAKWTEEHVGKTIVWGHNGHVSKTNMIPFVYPKVAGQY 60 M+ + PD D +LKHDIAMYENAKWTEEH+GKTIVWGHNGHVSKTNM+PFVYPKVAGQY Sbjct: 268 MLTSPPDKPSDLFLKHDIAMYENAKWTEEHLGKTIVWGHNGHVSKTNMLPFVYPKVAGQY 327 Query: 61 LAEHYGKRYVSIGTSVYE 78 LAE+YGK+YVSIGTSVYE Sbjct: 328 LAEYYGKQYVSIGTSVYE 345 >ref|NP_832946.1| Succinoglycan biosynthesis protein [Bacillus cereus ATCC 14579] gb|AAP10147.1| Succinoglycan biosynthesis protein [Bacillus cereus ATCC 14579] Length = 445 Score = 102 bits (255), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 58/166 (34%), Positives = 91/166 (54%), Gaps = 10/166 (6%) Query: 16 HDIAMYENAKWTEEHVG-KTIVWGHNGHVSKTNMIPFVYPKVAGQYLAEHYGKRYVSIGT 74 H+ + ++A W +E G KT+VW HN H++K + +YP VAGQ+L E YV+IG+ Sbjct: 282 HEQYLADHAMWAQETFGGKTMVWAHNIHIAKGIIDEKLYPYVAGQFLKERLDNNYVTIGS 341 Query: 75 SVYEGRYNVYNSKQEFGPF--GTLKLD----DPSSFNYSFGQVHYDQFFVDLRKASGVTK 128 + EG + +Y+ E+ P G + D D SFNY+ G+V Y F +D R G + Sbjct: 342 TTTEGNFTLYS---EYNPSTGGKITTDTIPQDVKSFNYTLGKVPYKMFLLDNRHLKGQAE 398 Query: 129 TWLNEQHPIFAGITTVGPDIPTTIDLSLGKTFDIIVQIQKVNPSQL 174 W+ + P+ + + P+ D SL + FDII I+K +PS + Sbjct: 399 KWVKAKRPLLSIGGQILPNSSVYFDTSLLEQFDIIFHIRKTSPSHI 444 >ref|NP_979589.1| erythromycin esterase, putative [Bacillus cereus ATCC 10987] gb|AAS42197.1| erythromycin esterase, putative [Bacillus cereus ATCC 10987] Length = 441 Score = 100 bits (249), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 58/171 (33%), Positives = 92/171 (53%), Gaps = 6/171 (3%) Query: 5 YPDNLKDFYLKHDIAMYENAKWTEEHVG-KTIVWGHNGHVSKTNMIPFVYPKVAGQYLAE 63 YP LK H+ + ++ W +E +G KT+VWGHN H++K + +YP VAGQ+L E Sbjct: 275 YPSMLK----LHEQYLTDHVMWAQETLGGKTMVWGHNIHIAKGIIDEELYPYVAGQFLKE 330 Query: 64 HYGKRYVSIGTSVYEGRYNVYNSKQEFGPFGTLKLDDPSSFNYSFGQVHYDQFFVDLRKA 123 YV+IG++ EG + +YN + + D +SFNY+ G+V Y F +D R Sbjct: 331 RLDNNYVTIGSTTTEGNFTLYNDTGDKIITNPIP-QDVNSFNYTLGKVPYKMFLLDNRHL 389 Query: 124 SGVTKTWLNEQHPIFAGITTVGPDIPTTIDLSLGKTFDIIVQIQKVNPSQL 174 G W+ + P+ + + P+ + SL + FDII I+K +PS + Sbjct: 390 KGPADKWVKAKRPLLSIGARLLPNDSAYFNKSLLEQFDIIFHIRKTSPSHI 440 >ref|NP_656136.1| hypothetical protein predicted by GeneMark [Bacillus anthracis A2012] ref|NP_844659.1| hypothetical protein [Bacillus anthracis str. Ames] gb|AAP26145.1| hypothetical protein BA2272 [Bacillus anthracis str. Ames] Length = 51 Score = 85.5 bits (210), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 38/51 (74%), Positives = 46/51 (90%) Query: 126 VTKTWLNEQHPIFAGITTVGPDIPTTIDLSLGKTFDIIVQIQKVNPSQLNR 176 +TK WLNEQHPIFAG+TT GP IP T+D+SLGK FDI+VQIQKV+PSQL++ Sbjct: 1 MTKNWLNEQHPIFAGVTTEGPGIPKTVDISLGKAFDILVQIQKVSPSQLHQ 51 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.319 0.137 0.423 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 290,849,891 Number of extensions: 12234720 Number of successful extensions: 25541 Number of sequences better than 1.0e-05: 8 Number of HSP's gapped: 25538 Number of HSP's successfully gapped: 8 Length of query: 176 Length of database: 757,237,578 Length adjustment: 117 Effective length of query: 59 Effective length of database: 439,570,995 Effective search space: 25934688705 Effective search space used: 25934688705 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 121 (51.2 bits)