BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0385.0010.p (334 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_905485.1| capA protein, putative [Porphyromonas gingivali... 188 2e-46 ref|NP_810521.1| capsule biosynthesis protein capA [Bacteroides ... 166 8e-40 gb|EAH53946.1| unknown [environmental sequence] 166 1e-39 gb|EAI24367.1| unknown [environmental sequence] 163 6e-39 ref|NP_735878.1| Unknown [Streptococcus agalactiae NEM316] >gi|2... 163 6e-39 >ref|NP_905485.1| capA protein, putative [Porphyromonas gingivalis W83] gb|AAQ66384.1| capA protein, putative [Porphyromonas gingivalis W83] Length = 395 Score = 188 bits (477), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 117/293 (39%), Positives = 168/293 (57%), Gaps = 25/293 (8%) Query: 10 ARRSDGTHSFDALFAKVAPYLKQADLTIGNLETTFAGNGPNSRRTLRSSGPIFKCPDELA 69 R D + SFD L +++ ADL IGNLETTFAG S P F PD + Sbjct: 70 GRVYDFSSSFDTLASRIG----AADLAIGNLETTFAG-------APYSGYPTFSSPDAMG 118 Query: 70 PALKKAGFDVLVTANNHCMDYGTPGLIRTLQVLDRNGISHTGTSRSLEESKQV--LIKNV 127 ALK AGFDVL TANNH D G G+IRTL +LD GI+HTG+ R + + ++ LI V Sbjct: 119 EALKNAGFDVLTTANNHTADKGKKGIIRTLDMLDSLGIAHTGSYRDIFDRDKMTPLILEV 178 Query: 128 KGIKIGILSYTAGTNRIPVPANXXXXPWLVNRIETGKISRE-IRXXXXXXXXXXXYLHFG 186 KG++I IL+YT GTN +PVPA P V+ I+T I ++ +R +H+G Sbjct: 179 KGVRIAILAYTYGTNGMPVPA-----PTWVDPIDTVMIKKDLLRADSLGADYRIVQIHWG 233 Query: 187 NEYHYTPNKRQKQLVNLFFKHGANIILGSHPHVLQP---MESRGKKKFVIYSLGNFVSTK 243 EY P+ Q +L ++GA+ I+GSHPHV+Q ++S K FVIYS+GNF+S + Sbjct: 234 IEYRKEPDSEQLELARKLHRYGADAIIGSHPHVVQGSQWLKSDSKTSFVIYSMGNFISNQ 293 Query: 244 LMNIPYTQSGIILNLTIQKDQKGNTNITNVNYIPTGVDRRMASGSTMTEVVPI 296 T+ G++L+LT++K G+ T+ +Y V++R G + ++P+ Sbjct: 294 -RKPAATRGGMLLSLTLRK--VGDRITTHPDYQYVFVNKRTPQGKRVYRLLPV 343 >ref|NP_810521.1| capsule biosynthesis protein capA [Bacteroides thetaiotaomicron VPI-5482] gb|AAO76715.1| capsule biosynthesis protein capA [Bacteroides thetaiotaomicron VPI-5482] Length = 378 Score = 166 bits (420), Expect = 8e-40, Method: Compositional matrix adjust. Identities = 107/298 (35%), Positives = 153/298 (51%), Gaps = 24/298 (8%) Query: 7 ISEARRSDGTHSFDALFAKVAPYLKQADLTIGNLETTFAGNGPNSRRTLRSSGPIFKCPD 66 I+ AR + G + + + F V ++ AD I NLE T G P F PD Sbjct: 55 INAARTATGGYDYSSYFEYVKDEIQSADFAIANLEVTLGGKP-------YKGYPAFSAPD 107 Query: 67 ELAPALKKAGFDVLVTANNHCMDYGTPGLIRTLQVLDRNGISHTGTSRSLE--ESKQVLI 124 E A+ AGF+VL+TANNH +D G GL RT+Q++D I H GT + E E+K L+ Sbjct: 108 EYLTAIHNAGFNVLITANNHSLDRGRKGLERTIQLIDSLKIPHAGTYLNAEERENKYPLL 167 Query: 125 KNVKGIKIGILSYTAGTNRIPVPANXXXXPWLVNRIETGKISREIRXXXXXX-XXXXXYL 183 KG +I IL+YT GTN IPV P +VN I+T IS++I + Sbjct: 168 LEKKGFRIAILNYTYGTNGIPVTP-----PNIVNYIDTTIISKDIEASKTLNPDAIIACM 222 Query: 184 HFGNEYHYTPNKRQKQLVNLFFKHGANIILGSHPHVLQPMESR-----GKKKFVIYSLGN 238 H+G EY P+K QK L + G N I+G HPHV+QP+E R +K V+YSLGN Sbjct: 223 HWGIEYQSLPDKEQKFLTYWLLQKGVNHIIGCHPHVVQPIEVREDSLTNEKHLVVYSLGN 282 Query: 239 FVSTKLMNIPYTQSGIILNLTIQKDQKGNTNITNVNYIPTGVDRRMASGSTMTEVVPI 296 ++S M+ T G+++ + + KD T + + Y R + S +++PI Sbjct: 283 YISN--MSARRTDGGLMVKMELVKD--STTRLNHCEYSLVWTARPVQSKKKNHQLLPI 336 >gb|EAH53946.1| unknown [environmental sequence] Length = 268 Score = 166 bits (419), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 101/255 (39%), Positives = 146/255 (57%), Gaps = 24/255 (9%) Query: 17 HSFDALFAKVAPYLKQADLTIGNLETTFAGNGPNSRRTLRSSGPIFKCPDELAPALKKAG 76 + F +F+KVAP+ D ++GNLE TF G P F PDELA + K++G Sbjct: 23 YDFTPVFSKVAPFFNAVDFSVGNLELTFGGKP-------YKGYPRFSSPDELAFSCKRSG 75 Query: 77 FDVLVTANNHCMDYGTPGLIRTLQVLDRNGISHTGTSR-SLEE-SKQVLIKNVKGIKIGI 134 +VL+TANNH D G G++RTL+VLD I HTGT + SL+ + +LI I++GI Sbjct: 76 INVLMTANNHSCDTGRKGILRTLKVLDSANIYHTGTFKDSLDRINNNLLILKKNNIRVGI 135 Query: 135 LSYTAGTNRIPVPANXXXXPWLVNRIETGKISREI-RXXXXXXXXXXXYLHFGNEYHYTP 193 L+YT GTN +PVP VN I+T I ++I +LH+G +Y P Sbjct: 136 LNYTYGTNGLPVPKGT-----FVNIIDTNLIKKDIYNSKNKNIDKLIVFLHWGRQYKSHP 190 Query: 194 NKRQKQLVNLFFKHGANIILGSHPHVLQPMESRGK-----KKFVIYSLGNFVST-KLMNI 247 + QK+ + K+G +I++GSHPHVLQ ME + + K V+YSLGNF+S + +N Sbjct: 191 SNGQKKTADFLLKNGVDIVIGSHPHVLQKMEYKNRDGKEDKVAVVYSLGNFISNQREVN- 249 Query: 248 PYTQSGIILNLTIQK 262 G+++N+TI K Sbjct: 250 --RDGGLMVNITILK 262 >gb|EAI24367.1| unknown [environmental sequence] Length = 405 Score = 163 bits (412), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 103/303 (33%), Positives = 158/303 (52%), Gaps = 23/303 (7%) Query: 6 IISEARRSDGTHSFDALFAKVAPYLKQADLTIGNLETTFAGNGPNSRRTLRSSGPIFKCP 65 I S + S + +D +F + + D + NLE T AG + P F P Sbjct: 39 IRSAWQESSKEYDYDEVFNPLKELISSVDFAVANLEVTLAGKPYDGY-------PQFSSP 91 Query: 66 DELAPALKKAGFDVLVTANNHCMDYGTPGLIRTLQVLDRNGISHTGT--SRSLEESKQVL 123 D LA A K+ G DVLVTANNH D G+ G+I+T+ LD+ I HTGT +S +L Sbjct: 92 DNLAVACKENGIDVLVTANNHSCDRGSKGVIKTVNTLDKLSILHTGTFSDDKKRDSLNLL 151 Query: 124 IKNVKGIKIGILSYTAGTNRIPVPANXXXXPWLVNRIETGKISREI-RXXXXXXXXXXXY 182 + GIK+G+L+YT GTN +P + P VN +++ I +++ + + Sbjct: 152 VLYKNGIKVGLLNYTYGTNGMPFAS-----PSYVNLLDSALIKKDVLKAKENEIDKLIVF 206 Query: 183 LHFGNEYHYTPNKRQKQLVNLFFKHGANIILGSHPHVLQPM----ESRGKKKFV-IYSLG 237 +H+G EY PN+ QKQ F + G ++++GSHPHV+QPM +S K+F+ +YSLG Sbjct: 207 VHWGTEYKDFPNQYQKQYNKYFKELGVDVVVGSHPHVIQPMIYESDSTNNKEFLTVYSLG 266 Query: 238 NFVSTKLMNIPYTQSGIILNLTIQKDQKGNTNITNVNYIPTGVDRRMASGSTMTEVVPIR 297 NFVS + G++L L+ K +K I+N Y+ T V + +G +++P Sbjct: 267 NFVSNQRER--RKDGGVMLRLSFSKTKK-EVKISNKEYLLTWVHKFKEAGKNHYQILPCT 323 Query: 298 DAL 300 L Sbjct: 324 HPL 326 >ref|NP_735878.1| Unknown [Streptococcus agalactiae NEM316] emb|CAD47100.1| Unknown [Streptococcus agalactiae NEM316] Length = 392 Score = 163 bits (412), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 99/300 (33%), Positives = 158/300 (52%), Gaps = 16/300 (5%) Query: 6 IISEARRSDGTHSFDALFAKVAPYLKQADLTIGNLETTFAGNGPNSRRTLRSSGPIFKCP 65 + + AR+ DGT++F F +V +++ ADL IG+ E T + P + P+F P Sbjct: 60 LYASARQPDGTYNFTPYFKEVKSWIESADLAIGDYEGTISSEYP------LAGYPLFNAP 113 Query: 66 DELAPALKKAGFDVLVTANNHCMDYGTPGLIRTLQVLDRNGISHTGTSRSLEESKQVLIK 125 +E+A +K+ G+DV+ A+NH +D G I T++ +R G+ G + +LIK Sbjct: 114 NEIATTMKETGYDVVDLAHNHILDSQLAGAINTVKTFNRMGLDTIGVYLKDRNKEDILIK 173 Query: 126 NVKGIKIGILSYTAGTNRIPVPANXXXXPWLVNRIETGKISREIRXXXXXXXXXXXYLHF 185 V GIKI IL Y+ G N + + ++ ++T KI ++I+ Sbjct: 174 RVNGIKIAILGYSYGYNGMEANVSKSDYEKHMSDLDTKKIKQDIKKAEKEADITIVMPQM 233 Query: 186 GNEYHYTPNKRQKQLVNLFFKHGANIILGSHPHVLQPME---SRGKKKFVIYSLGNFVST 242 G EY P Q L + K GA+II G HPHV++P E G+KKF+IYS+GNF+S Sbjct: 234 GIEYQKKPTTEQVMLYHSMIKWGADIIFGGHPHVVEPSEVIKKDGQKKFIIYSMGNFISN 293 Query: 243 KLMNIP---YTQSGIILNLTIQKDQKGN-TNITNVNYIPTGVDRRMASGSTMTEVVPIRD 298 + + +T+ G+++++TI+K KG T I V PT V+ + A+G + E P D Sbjct: 294 QRLETVDDIWTERGLLMDVTIEK--KGQKTVIKKVKAHPTLVEAK-ANGRYVEEGFPAYD 350 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.318 0.135 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 458,864,768 Number of extensions: 18301337 Number of successful extensions: 40188 Number of sequences better than 1.0e-05: 69 Number of HSP's gapped: 40072 Number of HSP's successfully gapped: 71 Length of query: 334 Length of database: 757,237,578 Length adjustment: 126 Effective length of query: 208 Effective length of database: 415,135,104 Effective search space: 86348101632 Effective search space used: 86348101632 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 126 (53.1 bits)