BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0385.0002.p (339 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|AAK83171.1| AviX9 [Streptomyces viridochromogenes] 181 2e-44 ref|NP_624916.1| conserved hypothetical protein SCF55.28c [Strep... 160 4e-38 ref|NP_601589.2| hypothetical protein NCgl2305 [Corynebacterium ... 149 1e-34 ref|NP_821953.1| hypothetical protein [Streptomyces avermitilis ... 147 5e-34 gb|EAG49563.1| unknown [environmental sequence] 86 1e-15 >gb|AAK83171.1| AviX9 [Streptomyces viridochromogenes] Length = 355 Score = 181 bits (460), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 112/325 (34%), Positives = 170/325 (52%), Gaps = 16/325 (4%) Query: 11 FHGAVSLEHREEGVKPWRIPYADYELYAPEGIGGKAEICAGVRLRLRSDSAEVAVSFLPL 70 + GAVSL+ + G+ PWRIP+ + L+ PEG G+A + GVR+ R+D+ +A + Sbjct: 17 YRGAVSLQEVDGGIAPWRIPFQERHLFFPEGGVGRAAMPTGVRVTFRTDAEGLAFRYAAR 76 Query: 71 A--------DAAAMDCLVAGQLFLTLTLPPG--ATEALFSGLPAGINDL-EIWLPQNIGM 119 + A +D V G+ +L L LP G + L E+WLP Sbjct: 77 PAPEMPGPPETAHVDVRVDGKPVASLPLVTDREVHTCRVGALPGGSDRLVELWLPGLNQF 136 Query: 120 TVTGLRIGSGAAGDPLPDRRPRWITYGSSITQCVAASSPSRAWPAIAAADCGWNVTNLGF 179 + G+ + +GA PRW+ YG+S +Q A SP+R W A A + G ++T+L Sbjct: 137 VLHGVELPAGAEVGRDTHTAPRWVHYGASESQGRGALSPTRNWTATVATELGLDLTSLAI 196 Query: 180 SGNCHMEPMIGRLIRDLPADFISICVGVNIYGAGTLSPRMFKPLLIGLLETIRDRHKETP 239 C+++P+ L+RDLPAD I+ VG+NIYGA L+ ++P L+GL+ IR+RH TP Sbjct: 197 GAGCYLQPLFATLLRDLPADLITCMVGMNIYGARALNQFTYRPNLVGLVRIIRERHPSTP 256 Query: 240 LLVISPIYGTVRETEPNPLGFTLPMMREDIRQTVELLRERGDRQLYDLDGLSWFGPED-- 297 L++ S Y + +L +RE R+ V+LLR GD ++ + G S GPE Sbjct: 257 LVIASHHYSPWHDPLEGDGYLSLTEVREQTREVVDLLRADGDENVHYVHGPSLAGPETAH 316 Query: 298 ---EAFLTDGLHPGAKGYELLGRRF 319 E TD LH +G++LL F Sbjct: 317 LYVEPRYTDPLHFNQEGHDLLAAAF 341 >ref|NP_624916.1| conserved hypothetical protein SCF55.28c [Streptomyces coelicolor A3(2)] emb|CAB61298.1| conserved hypothetical protein SCF55.28c [Streptomyces coelicolor A3(2)] Length = 391 Score = 160 bits (405), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 120/371 (32%), Positives = 173/371 (46%), Gaps = 59/371 (15%) Query: 5 PLTDEWFHGAVSLEHREEGVKPWRIPYADYELYAPEGIGGKAEIC-AGVRLRLRSDSAEV 63 PLT + GA+ +E E G+ P R+P A +G AE +GVRL LR+ + + Sbjct: 11 PLTRDLLRGALDVERTERGLLPHRLP-ARARAQNNDGQLAMAESQPSGVRLALRTRATVL 69 Query: 64 AVSFLPLADA---------AAMDCLVAGQ------------LFLTLT-----LPPGATEA 97 + LP D LV G+ L + +T + PG Sbjct: 70 ELDTLPTKRVYVGVPPRPDGVYDLLVDGRPAGRGTVVGGNTLTIDMTTGAAAVEPGEVGT 129 Query: 98 L-FSGLPAGINDLEIWLPQNIGMTVTGLRIGSGAAGDPLPDRRPRWITYGSSITQCVAAS 156 L F+ LP G D+EIWLP N + LR + P P RR W+ +GSSI+ A+ Sbjct: 130 LRFADLPGGTKDIEIWLPHNETTELVALRTDAPVEPAPDPGRR-VWLHHGSSISHGSDAA 188 Query: 157 SPSRAWPAIAAADCGWNVTNLGFSGNCHMEPMIGRLIRDLPADFISICVGVNIYGAGTLS 216 SP+ WPA+AA+ G + NLG G+ ++P R +RD PAD IS+ +G+N+ A + Sbjct: 189 SPTTTWPALAASLGGVELINLGLGGSALLDPFTARAMRDTPADLISVKIGINVVNADVMR 248 Query: 217 PRMFKPLLIGLLETIRDRHKETPLLVISPIYGTVRETEPNPLG----------------- 259 R F P + G L+T+R+ H PLLV+SP+ V+E P PL Sbjct: 249 LRAFGPAVHGFLDTVREGHPTAPLLVVSPLLCPVQEDTPGPLAPDFSGLAEGRLRFVATG 308 Query: 260 ---------FTLPMMREDIRQTVELLRERGDRQLYDLDGLSWFGPEDEAF--LTDGLHPG 308 TL ++R+++ + V R LY LDG +G D A L D +HP Sbjct: 309 DPAERASGKLTLNVIRDELSRIVS-ERAADHENLYYLDGRELYGQADAADLPLPDDIHPD 367 Query: 309 AKGYELLGRRF 319 A + L+G RF Sbjct: 368 AATHRLIGERF 378 >ref|NP_601589.2| hypothetical protein NCgl2305 [Corynebacterium glutamicum ATCC 13032] dbj|BAB99781.1| Hypothetical protein [Corynebacterium glutamicum ATCC 13032] emb|CAF21053.1| conserved hypothetical protein [Corynebacterium glutamicum ATCC 13032] Length = 362 Score = 149 bits (375), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 107/364 (29%), Positives = 156/364 (42%), Gaps = 56/364 (15%) Query: 6 LTDEWFHGAVSLEHREEGVKPWRIPYADYELYAPEGIGGKAEICAGVRLRLRS------- 58 + E+ HGA +E G++P R+ E Y +GVR+ R+ Sbjct: 1 MNPEFIHGATEIETTNRGLRPHRLSKEIVERYCDPQFSAMERQPSGVRVVCRTTATSVTL 60 Query: 59 ----------DSAEVAVSFLPLADAAAMDCL-VAGQLFLTLTLPPGATEALFS------- 100 DS L D A +G + GATE Sbjct: 61 TTYSTRVVYLDSGRPGGKIDVLIDGAPTSSTPTSGGETTEVNFITGATERRLKDPQVLTV 120 Query: 101 -GLPAGINDLEIWLPQNIGMTVTGLRIGSGAAGDPLPDRRPRWITYGSSITQCVAASSPS 159 GL +E WLP N + V L+ + AA + + D RP WI YGSSI+ A++P+ Sbjct: 121 DGLSEQEKVVEFWLPHNEEIEVISLK--ANAALNTVEDTRPVWINYGSSISHGSVATAPT 178 Query: 160 RAWPAIAAADCGWNVTNLGFSGNCHMEPMIGRLIRDLPADFISICVGVNIYGAGTLSPRM 219 + WPAI A +N+ N GF G+ ++P + RLIRD PAD I++ +G+NI + R Sbjct: 179 KIWPAIVAQSKNYNLRNFGFGGSAMLDPFMARLIRDTPADLITLEIGINIVNGDVMRRRG 238 Query: 220 FKPLLIGLLETIRDRHKETPLLVISPIYGTVRETEPNPLGF------------------- 260 + + G + TIRD H TP+ ++SP Y + E P P F Sbjct: 239 LEAAVDGFINTIRDGHPTTPIKIVSPFYCPIHEKTPGPGAFDTSSFGSGQIRFIATGEPD 298 Query: 261 -----TLPMMREDIRQTVELLRERGDRQLYDLDGLSWFGPEDEAFLTDGLHPGAKGYELL 315 TL M+RE + VE ++ D L +DG S + D A L D LHP + L+ Sbjct: 299 EHGRLTLEMVREVLEGFVE---KQKDPHLTYVDGASLYQASD-APLLDNLHPDEASHALI 354 Query: 316 GRRF 319 +R Sbjct: 355 AQRL 358 >ref|NP_821953.1| hypothetical protein [Streptomyces avermitilis MA-4680] dbj|BAC68488.1| hypothetical protein [Streptomyces avermitilis MA-4680] Length = 343 Score = 147 bits (370), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 105/324 (32%), Positives = 149/324 (45%), Gaps = 57/324 (17%) Query: 50 AGVRLRLRSDSAEVAVSFLPLADA---------AAMDCLVAGQLFLTLTLPPG------- 93 +GVRL R+ + + + LP D LV G+L T+ G Sbjct: 7 SGVRLAFRTRATTIELDTLPTKRVYRGFPAPADGVYDLLVDGRLAAQATVADGNVRTIVD 66 Query: 94 ------------ATEALFSGLPAGINDLEIWLPQNIGMTVTGLRIGSGAAGDPLPDR-RP 140 A A F+ LPAG D+EIWLP + LR +P PD R Sbjct: 67 MVTQSTELREGPAGTARFTDLPAGGKDIEIWLPHTEITELIALRTDDPV--EPAPDSGRR 124 Query: 141 RWITYGSSITQCVAASSPSRAWPAIAAADCGWNVTNLGFSGNCHMEPMIGRLIRDLPADF 200 W+ +GSSI+ A+ P+ WPA+AAA G + NLGF G+ ++P R +RD PAD Sbjct: 125 VWLHHGSSISHGSNAAHPTAIWPALAAAQGGVELVNLGFGGSALLDPFTARAMRDTPADL 184 Query: 201 ISICVGVNIYGAGTLSPRMFKPLLIGLLETIRDRHKETPLLVISPIYGTVRETEPNPLG- 259 IS+ +G+N+ + R P + G L+TIR+ H TPLLV+SPI V+E P PL Sbjct: 185 ISLKIGINLVNTDAMRLRALTPAVHGFLDTIREGHPTTPLLVVSPILCPVQEDTPGPLAP 244 Query: 260 ----------------------FTLPMMREDIRQTVELLRERGDRQLYDLDGLSWFGPED 297 TL ++R+++ + VE R D L+ LDG +G +D Sbjct: 245 DFDGGTLRFKATGDPAERAAGRLTLNVIRDELARIVE-QRTADDPNLHYLDGRDLYGEKD 303 Query: 298 --EAFLTDGLHPGAKGYELLGRRF 319 E L D +HP G+ +G F Sbjct: 304 YAEFPLPDEVHPDPSGHRRIGENF 327 >gb|EAG49563.1| unknown [environmental sequence] Length = 231 Score = 86.3 bits (212), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 65/215 (30%), Positives = 102/215 (47%), Gaps = 21/215 (9%) Query: 107 NDLEIWLPQNIGMTVTGLRIGSGAAGDPLPDR--RPRWITYGSSITQCVAASSPSRAWPA 164 +++EI+ P + V +G + R R + + YGSSITQ AS+P ++PA Sbjct: 21 HEVEIYFP--LYSEVLDFYVGINEFAEIYQKRDVRQKIVYYGSSITQGCCASNPGMSFPA 78 Query: 165 IAAADCGWNVTNLGFSGNCHMEPMIGRLIRDLPADFISICVGVNIYGAGTLSPRMFKPLL 224 I + G + NLGFSGN + I I L I + N P +++ L Sbjct: 79 IVSRKIGVDHINLGFSGNGLGDIEIADFINSLSPTIIVLDYWAN------PDPPIYQETL 132 Query: 225 IGLLETIRDRHKETPLLVISPIYGTVRETEPNPLGFTLPMMREDIRQ-TVELLRERGDRQ 283 ++ IR +HK P++V S T NP + +++I + V+ RE+GDR Sbjct: 133 PLFVQRIRSKHKNVPIIVTS--------TFANPRREVIQKYKDEISKLIVQTEREKGDRN 184 Query: 284 LYDLDGLSWFGPEDEAFLTDGLHPGAKGYELLGRR 318 +Y LDGL ++ L DG H + G+ L+G R Sbjct: 185 IYFLDGL--LNEDEFDALVDGRHLNSYGFFLVGER 217 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.321 0.141 0.444 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 510,172,456 Number of extensions: 21988753 Number of successful extensions: 44817 Number of sequences better than 1.0e-05: 12 Number of HSP's gapped: 44809 Number of HSP's successfully gapped: 12 Length of query: 339 Length of database: 757,237,578 Length adjustment: 126 Effective length of query: 213 Effective length of database: 415,135,104 Effective search space: 88423777152 Effective search space used: 88423777152 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 126 (53.1 bits)