BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0383.0019.p (189 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_00184391.1| hypothetical protein Exigu008701 [Exiguobacte... 118 7e-26 ref|NP_809418.1| conserved hypothetical protein [Bacteroides the... 114 1e-24 ref|NP_484782.1| hypothetical protein [Nostoc sp. PCC 7120] >gi|... 77 1e-13 ref|NP_922982.1| hypothetical protein gll0036 [Gloeobacter viola... 77 2e-13 gb|EAH90407.1| unknown [environmental sequence] 74 2e-12 >ref|ZP_00184391.1| hypothetical protein Exigu008701 [Exiguobacterium sp. 255-15] Length = 182 Score = 118 bits (295), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 70/167 (41%), Positives = 96/167 (57%), Gaps = 3/167 (1%) Query: 1 MEIENLIPVKSREDLRNWLQDNGKTEKCCWVLVSLTPIPDVLL-YLDAVEEALCFGWVDG 59 +EI + V+ R+WL+++ TE W++ L Y++ VEEALCFGW+DG Sbjct: 4 VEITTQLYVEHIGQWRSWLENHHLTETEVWLVFDKKDAEKYQLDYIETVEEALCFGWIDG 63 Query: 60 VKKKISETELAQRLSPRSKKSSWTELNKERVRRLEKLGFMRDEGRRVLPDMDHHSFTIDK 119 +KKK + L QR +PR S WTELNKERVRRL LG MR++G +V PD+ F ID Sbjct: 64 IKKKDGD-RLLQRFTPRRTNSHWTELNKERVRRLMALGKMREQGIKVTPDLT-VPFEIDH 121 Query: 120 DIEQRLKEEKQVYENFMAFPDLYQRVRIDTIQSYRNQPEVYKNRLDK 166 I LK++ Y+ F P+LY RVRI IQ + Y+ D+ Sbjct: 122 IIITELKKDPDTYQFFRTLPELYIRVRISYIQDCKRDSAEYEKTSDQ 168 >ref|NP_809418.1| conserved hypothetical protein [Bacteroides thetaiotaomicron VPI-5482] gb|AAO75612.1| conserved hypothetical protein [Bacteroides thetaiotaomicron VPI-5482] Length = 189 Score = 114 bits (284), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 70/182 (38%), Positives = 101/182 (55%), Gaps = 10/182 (5%) Query: 1 MEIENLIP-VKSREDLRNWLQDNGKTEKCCWVLVSLTPIPD-VLLYLDAVEEALCFGWVD 58 M EN I ++RED R WL DN +TE W + L + + Y DAVEEALCF W+D Sbjct: 1 MATENKIKYFENREDWRKWLMDNFETEDEIWFVFPLKSSGEKSIAYNDAVEEALCFEWID 60 Query: 59 GVKKKISETELAQRLSPRSKKSSWTELNKERVRRLEKLGFMR----DEGRRVLPDMDHHS 114 K + + QR +PR KS++++ NKER++ L + D+ R VL D Sbjct: 61 STIKPLDKEHRIQRFTPRKPKSTYSQANKERLKWLLANKMIHPEFEDKIRTVLSD----P 116 Query: 115 FTIDKDIEQRLKEEKQVYENFMAFPDLYQRVRIDTIQSYRNQPEVYKNRLDKFITNTRAN 174 F DI RLKE++ + N+ F D Y+R+RI I++ R +PE ++ RL+ FI + N Sbjct: 117 FIFPNDIMDRLKEDEIAWRNYRHFSDAYKRIRIAYIEAARKRPEEFEKRLNNFICKVKEN 176 Query: 175 KM 176 KM Sbjct: 177 KM 178 >ref|NP_484782.1| hypothetical protein [Nostoc sp. PCC 7120] pir||AI1898 hypothetical protein alr0739 [imported] - Nostoc sp. (strain PCC 7120) dbj|BAB72696.1| ORF_ID:alr0739~hypothetical protein [Nostoc sp. PCC 7120] Length = 193 Score = 77.4 bits (189), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 48/176 (27%), Positives = 87/176 (49%), Gaps = 12/176 (6%) Query: 12 REDLRNWLQDNGKTEKCCWVLV-SLTPIPDVLLYLDAVEEALCFGWVDGVKKKISETELA 70 R++ R WL+ N +T W++ + + Y +AV+EALCFGW+D K + E Sbjct: 16 RQEWREWLEKNYQTSIGVWLIYYKVKSGKPSIKYNEAVKEALCFGWIDSKVKSLDEERYM 75 Query: 71 QRLSPRSKKSSWTELNKERVRRLEKLGFMRDEGRRVLPDM----------DHHSFTIDKD 120 Q +PR KS W++LNK+ ++ L + G M + G + D + I +D Sbjct: 76 QIFTPRKPKSVWSKLNKQYIQELSEQGLMIEAGLAKIAAAKQDGSWTKLDDIEALIIPED 135 Query: 121 IEQRLKEEKQVYENFMAFPDLYQRVRIDTIQSYRNQPEVYKNRLDKFITNTRANKM 176 ++Q L + + F+ + ++ + I S + +PE R+++ I +T NK+ Sbjct: 136 LQQALAANETANQYFLGLSNSSKKNILSWIASAK-RPETRLKRIEQTINSTAQNKL 190 >ref|NP_922982.1| hypothetical protein gll0036 [Gloeobacter violaceus] dbj|BAC87977.1| gll0036 [Gloeobacter violaceus PCC 7421] Length = 205 Score = 76.6 bits (187), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 58/182 (31%), Positives = 81/182 (44%), Gaps = 18/182 (9%) Query: 9 VKSREDLRNWLQDNGKTEKCCWVLV--SLTPIPDVLLYLDAVEEALCFGWVDGVKKKISE 66 V SR + R WL DN K W++ + +P V Y VEEALCFGW+D K+ E Sbjct: 21 VTSRAEWRGWLTDNHTRTKSIWLVTYKKRSGMPHVP-YDVVVEEALCFGWIDSRPGKLDE 79 Query: 67 TELAQRLSPRSKKSSWTELNKERVRRLEKLGFMRDEGRRVLPDMDH----------HSFT 116 LSPR S W+++NK RV RL + G M G + + S Sbjct: 80 RRSMLLLSPRRSGSPWSKINKARVERLIEQGLMTAVGMQKIEQAQADSSWSVLDGVESLV 139 Query: 117 IDKDIEQRLKEEKQVYENFMAFPDLYQRVRIDTIQSYRNQPEVYKNRLDKFI----TNTR 172 I D+ L E Q F AF ++ + IQS + + E + R+ + I N + Sbjct: 140 IPSDLAAALAENSQAAVYFAAFSPSSKKGILQWIQSAKRE-ETRRKRIAETIELAANNIK 198 Query: 173 AN 174 AN Sbjct: 199 AN 200 >gb|EAH90407.1| unknown [environmental sequence] Length = 198 Score = 73.9 bits (180), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 40/103 (38%), Positives = 54/103 (52%), Gaps = 1/103 (0%) Query: 4 ENLIPVKSREDLRNWLQDNGKTEKCCWV-LVSLTPIPDVLLYLDAVEEALCFGWVDGVKK 62 E + + S+ + NWL+ NG T W+ L + Y A+E ALC GW+DG K+ Sbjct: 12 ECALTLTSQIEWENWLEQNGSTSDGTWLRLAKKGTAQRTITYEQALESALCHGWIDGQKR 71 Query: 63 KISETELAQRLSPRSKKSSWTELNKERVRRLEKLGFMRDEGRR 105 SE QR +PRS KS W++LN +R L G MR G R Sbjct: 72 AESEQYWLQRFTPRSAKSIWSKLNTDRAEALIAAGRMRPPGLR 114 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.319 0.136 0.414 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 286,166,797 Number of extensions: 11260864 Number of successful extensions: 42753 Number of sequences better than 1.0e-05: 13 Number of HSP's gapped: 42742 Number of HSP's successfully gapped: 13 Length of query: 189 Length of database: 757,237,578 Length adjustment: 119 Effective length of query: 70 Effective length of database: 434,140,797 Effective search space: 30389855790 Effective search space used: 30389855790 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 122 (51.6 bits)