BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0383.0013.p
         (72 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_832406.1| Transcriptional regulator, MerR family [Bacillu...    67   2e-10
gb|EAI25278.1| unknown [environmental sequence]                        62   3e-09
gb|AAM03020.1| regulatory protein C.BcnI [Brevibacillus centrosp...    60   2e-08
ref|NP_478090.1| hypothetical protein [Corynebacterium glutamicu...    59   3e-08
ref|NP_776234.1| Yga2B [Corynebacterium glutamicum] >gi|27657783...    58   6e-08

>ref|NP_832406.1| Transcriptional regulator, MerR family [Bacillus cereus ATCC
          14579]
 gb|AAP09607.1| Transcriptional regulator, MerR family [Bacillus cereus ATCC
          14579]
          Length = 119

 Score = 66.6 bits (161), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 34/59 (57%), Positives = 43/59 (72%)

Query: 4  EILKLVGTRIRALRKERGLSQEALGEKGGFHFSYIGQIERGEKNVSLLNLHKIAESLEV 62
          + LKLVG  IR LRK+RGL+QE L E+     +YIG +ERGE+N+S+L L KIA  LEV
Sbjct: 3  DFLKLVGENIRFLRKKRGLTQEELAEQINLQQAYIGGVERGERNISMLTLQKIAVGLEV 61


>gb|EAI25278.1| unknown [environmental sequence]
          Length = 70

 Score = 62.4 bits (150), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 27/53 (50%), Positives = 41/53 (77%)

Query: 10 GTRIRALRKERGLSQEALGEKGGFHFSYIGQIERGEKNVSLLNLHKIAESLEV 62
          G R+R +RKE+GLSQEAL +  G   SY+G IERG++N++L  +++I+E+L V
Sbjct: 10 GERVRQIRKEKGLSQEALADLAGIDRSYMGHIERGDQNITLTKIYQISEALRV 62


>gb|AAM03020.1| regulatory protein C.BcnI [Brevibacillus centrosporus]
          Length = 74

 Score = 60.1 bits (144), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 44/59 (74%)

Query: 4  EILKLVGTRIRALRKERGLSQEALGEKGGFHFSYIGQIERGEKNVSLLNLHKIAESLEV 62
          +I +  G ++R +R+++GL+QE L E+ G H +YI  +ERGE+++SL N+ KIA +L+V
Sbjct: 3  DICRKFGRKVRIIREQKGLTQEKLAEEAGLHRTYISSLERGERSISLNNIEKIARALDV 61


>ref|NP_478090.1| hypothetical protein [Corynebacterium glutamicum]
 emb|CAD12221.1| hypothetical protein [Corynebacterium glutamicum]
          Length = 81

 Score = 58.9 bits (141), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 30/61 (49%), Positives = 41/61 (67%)

Query: 2  DKEILKLVGTRIRALRKERGLSQEALGEKGGFHFSYIGQIERGEKNVSLLNLHKIAESLE 61
          DK+IL  +G RIR +RK  G+SQE L    G H +Y+  +ERGE+N+S+LNL  +A  L 
Sbjct: 4  DKKILIQLGGRIRDVRKSLGISQEELAHLSGMHRTYVSSVERGERNISVLNLLSLAGVLG 63

Query: 62 V 62
          V
Sbjct: 64 V 64


>ref|NP_776234.1| Yga2B [Corynebacterium glutamicum]
 gb|AAO18211.1| Yga2B [Corynebacterium glutamicum]
          Length = 81

 Score = 58.2 bits (139), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 30/61 (49%), Positives = 41/61 (67%)

Query: 2  DKEILKLVGTRIRALRKERGLSQEALGEKGGFHFSYIGQIERGEKNVSLLNLHKIAESLE 61
          DK+IL  +G RIR +RK  G+SQE L    G H +Y+  +ERGE+N+S+LNL  +A  L 
Sbjct: 4  DKKILIQLGGRIRDVRKGLGISQEELAHLSGMHRTYVSSVERGERNISVLNLLSLAGVLG 63

Query: 62 V 62
          V
Sbjct: 64 V 64


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.318    0.139    0.372 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 82,312,140
Number of extensions: 2627952
Number of successful extensions: 7181
Number of sequences better than 1.0e-05: 23
Number of HSP's gapped: 7194
Number of HSP's successfully gapped: 23
Length of query: 72
Length of database: 757,237,578
Length adjustment: 43
Effective length of query: 29
Effective length of database: 640,488,321
Effective search space: 18574161309
Effective search space used: 18574161309
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 120 (50.8 bits)