BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0383.0010.p (103 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_714709.1| putative cbiX protein [Leptospira interrogans s... 86 2e-16 ref|ZP_00060882.1| COG1894: NADH:ubiquinone oxidoreductase, NADH... 85 5e-16 sp|P07324|FER2_CLOPA Ferredoxin, 2Fe-2S (2FeCpFd) >gi|65694|pir|... 85 6e-16 emb|CAC39230.1| HymB protein [Eubacterium acidaminophilum] 79 3e-14 ref|NP_622545.1| NADH:ubiquinone oxidoreductase, NADH-binding (5... 79 4e-14 >ref|NP_714709.1| putative cbiX protein [Leptospira interrogans serovar lai str. 56601] ref|YP_003526.1| ferredoxin [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gb|AAN51724.1| putative cbiX protein [Leptospira interrogans serovar lai str. 56601] gb|AAS72163.1| ferredoxin [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 389 Score = 86.3 bits (212), Expect = 2e-16, Method: Composition-based stats. Identities = 37/90 (41%), Positives = 54/90 (60%) Query: 8 LKKHLLFCCSEHCNNQDVEDVMQEFKEQLVEKGINKTVKINKTSCLGLCGNGPFVIVYPD 67 KKH+ C S C NQ ++ + + + + G +++K+SCLG CG GP V++YPD Sbjct: 296 FKKHIFVCDSVDCVNQGSISLIHKIRSFIRKHGRQSDFRVSKSSCLGRCGEGPTVVIYPD 355 Query: 68 GIWYYNVTTDDVERIVEEHLVNGEPVEELV 97 GIWY V+ DD + +V+EHL N V LV Sbjct: 356 GIWYQRVSEDDAKELVDEHLFNDRLVTRLV 385 >ref|ZP_00060882.1| COG1894: NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit [Clostridium thermocellum ATCC 27405] Length = 597 Score = 84.7 bits (208), Expect = 5e-16, Method: Composition-based stats. Identities = 36/93 (38%), Positives = 56/93 (60%) Query: 5 LKVLKKHLLFCCSEHCNNQDVEDVMQEFKEQLVEKGINKTVKINKTSCLGLCGNGPFVIV 64 +++ + H+L C C + + ++ E +EQ+ GI VK+ +T C GLC GP ++V Sbjct: 1 MQLYRAHVLVCGGTGCTSSNSNKIITELEEQIARNGIQNEVKVVRTGCFGLCAEGPIMVV 60 Query: 65 YPDGIWYYNVTTDDVERIVEEHLVNGEPVEELV 97 YP+G Y V +DV+ IVEEHLV G V+ L+ Sbjct: 61 YPEGAMYTMVKVEDVKEIVEEHLVKGRIVKRLL 93 >sp|P07324|FER2_CLOPA Ferredoxin, 2Fe-2S (2FeCpFd) pir||FECL2P ferredoxin [2Fe-2S] - Clostridium pasteurianum emb|CAA79492.1| [2Fe-2S] ferredoxin [Clostridium pasteurianum] Length = 102 Score = 84.7 bits (208), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 39/96 (40%), Positives = 59/96 (61%), Gaps = 9/96 (9%) Query: 10 KHLLFCCSE---------HCNNQDVEDVMQEFKEQLVEKGINKTVKINKTSCLGLCGNGP 60 KH +F C+ C +++ ++++ F E+L + ++ V +N T C G+C GP Sbjct: 5 KHHIFVCTSCRLNGKQQGFCYSKNSVEIVETFMEELDSRDLSSEVMVNNTGCFGICSQGP 64 Query: 61 FVIVYPDGIWYYNVTTDDVERIVEEHLVNGEPVEEL 96 V+VYP+G+WY NVT DDVE IVE H+ NGE V+ L Sbjct: 65 IVVVYPEGVWYGNVTADDVEEIVESHIENGEVVKRL 100 >emb|CAC39230.1| HymB protein [Eubacterium acidaminophilum] Length = 597 Score = 79.0 bits (193), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 36/89 (40%), Positives = 55/89 (61%) Query: 9 KKHLLFCCSEHCNNQDVEDVMQEFKEQLVEKGINKTVKINKTSCLGLCGNGPFVIVYPDG 68 K +L C C + +++ ++ + EKGI + KI KT C GLC GP VIVYP+G Sbjct: 4 KNTILVCAGTGCMSSSSLKILKRLEDLMAEKGILEQTKIVKTGCFGLCSVGPIVIVYPEG 63 Query: 69 IWYYNVTTDDVERIVEEHLVNGEPVEELV 97 +Y +V +D +RIV EHL+ G+ V++L+ Sbjct: 64 AFYAHVQEEDADRIVNEHLIGGKIVKDLL 92 >ref|NP_622545.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit [Thermoanaerobacter tengcongensis] gb|AAM24149.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit [Thermoanaerobacter tengcongensis] Length = 596 Score = 78.6 bits (192), Expect = 4e-14, Method: Composition-based stats. Identities = 32/89 (35%), Positives = 55/89 (61%) Query: 9 KKHLLFCCSEHCNNQDVEDVMQEFKEQLVEKGINKTVKINKTSCLGLCGNGPFVIVYPDG 68 + H++ C C + ++V + F E++ + G++K + + +T C GLC GP V+VYP+G Sbjct: 4 RSHVMVCGGTGCTSSGSDEVAERFIEEIKKAGLDKEILVVRTGCFGLCELGPVVVVYPEG 63 Query: 69 IWYYNVTTDDVERIVEEHLVNGEPVEELV 97 ++Y V + V IVEEHL+ G PV + + Sbjct: 64 VFYSRVKPEYVPEIVEEHLLKGRPVRKYI 92 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.320 0.138 0.420 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 160,188,700 Number of extensions: 6230859 Number of successful extensions: 19691 Number of sequences better than 1.0e-05: 96 Number of HSP's gapped: 19713 Number of HSP's successfully gapped: 96 Length of query: 103 Length of database: 757,237,578 Length adjustment: 70 Effective length of query: 33 Effective length of database: 567,180,648 Effective search space: 18716961384 Effective search space used: 18716961384 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 120 (50.8 bits)