BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0383.0008.p (329 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_406474.1| putative ion channel protein [Yersinia pestis] ... 480 e-134 ref|NP_993921.1| putative ion channel protein [Yersinia pestis b... 479 e-134 ref|NP_668822.1| putative reductase [Yersinia pestis KIM] >gi|21... 478 e-134 ref|NP_461347.1| putative oxidoreductase [Salmonella typhimurium... 457 e-127 ref|NP_456949.1| putative ion-channel protein [Salmonella enteri... 457 e-127 >ref|NP_406474.1| putative ion channel protein [Yersinia pestis] pir||AE0362 probable ion channel protein YPO2980 [imported] - Yersinia pestis (strain CO92) emb|CAC92224.1| putative ion channel protein [Yersinia pestis CO92] Length = 329 Score = 480 bits (1235), Expect = e-134, Method: Compositional matrix adjust. Identities = 229/327 (70%), Positives = 273/327 (83%) Query: 1 MYSANSERYSQMKYNRTGRSGLLLPAISLGLWHNFGGNDVFENGRAMIRRAFDLGITHFD 60 +Y A+S RY +M+Y+R G SGL LPAISLGLWHNFG + +EN R++I RAFD GITHFD Sbjct: 2 VYQASSSRYQEMEYHRCGHSGLKLPAISLGLWHNFGDSTRYENSRSLIHRAFDHGITHFD 61 Query: 61 LANNYGPPAGSAEESFGQILRKDLAAYRDELIISSKAGYYMWPGPYGEWGSKKYLVSSLD 120 LANNYGPP GSAE +FG+IL++DL YRDELII+SKAGY MWPGPYG+WGSKKYLV+S++ Sbjct: 62 LANNYGPPPGSAELNFGRILQQDLRPYRDELIIASKAGYTMWPGPYGDWGSKKYLVASIN 121 Query: 121 QSLKRMGLDYVDIFYHHRPDPNTPLEETMSALDLLVRQGKALYVGISNYNAEQAREAAQI 180 QSL+RMGLDYVDIFYHHRPDPNTPLEETM+ALDLLVRQGKALY+G+SNY A+QA+ A +I Sbjct: 122 QSLQRMGLDYVDIFYHHRPDPNTPLEETMAALDLLVRQGKALYIGLSNYPADQAQLACEI 181 Query: 181 LRRLGTPCLIHQPNYSMMSRWIEDGLQDVLAEEGIGTIAFSPLQKGILTDRYLKGITPDS 240 LR LGTPCLIHQP YSM R IE GLQD L E G+G+IAFSPL G+LTDRYL GI DS Sbjct: 182 LRALGTPCLIHQPKYSMFERGIEAGLQDTLDEYGVGSIAFSPLAGGLLTDRYLAGIPEDS 241 Query: 241 RAAGPSVFLSEKEITAEVIGKVSKLNELAAARGQKMSQLALSWVLRGGKVTSALIGASKV 300 RAA S FLS +++T E + K+ +LNELA RGQK+SQ++L+WVLRGG+VTSALIGASKV Sbjct: 242 RAASDSKFLSPEQLTPEKLVKIRQLNELALDRGQKLSQMSLAWVLRGGRVTSALIGASKV 301 Query: 301 SQIEDAVASLNAPELSAEELEQIENIL 327 SQI+DA+ L S +E+ IE+IL Sbjct: 302 SQIDDAIGMLANTNFSDKEINAIEHIL 328 >ref|NP_993921.1| putative ion channel protein [Yersinia pestis biovar Mediaevails str. 91001] gb|AAS62798.1| putative ion channel protein [Yersinia pestis biovar Mediaevails str. 91001] Length = 329 Score = 479 bits (1232), Expect = e-134, Method: Compositional matrix adjust. Identities = 229/327 (70%), Positives = 273/327 (83%) Query: 1 MYSANSERYSQMKYNRTGRSGLLLPAISLGLWHNFGGNDVFENGRAMIRRAFDLGITHFD 60 +Y A+S RY +M+Y+R G SGL LPAISLGLWHNFG + +EN R++I RAFD GITHFD Sbjct: 2 VYQASSSRYQEMEYHRCGHSGLKLPAISLGLWHNFGDSTWYENSRSLIHRAFDHGITHFD 61 Query: 61 LANNYGPPAGSAEESFGQILRKDLAAYRDELIISSKAGYYMWPGPYGEWGSKKYLVSSLD 120 LANNYGPP GSAE +FG+IL++DL YRDELII+SKAGY MWPGPYG+WGSKKYLV+S++ Sbjct: 62 LANNYGPPPGSAELNFGRILQQDLRPYRDELIIASKAGYTMWPGPYGDWGSKKYLVASIN 121 Query: 121 QSLKRMGLDYVDIFYHHRPDPNTPLEETMSALDLLVRQGKALYVGISNYNAEQAREAAQI 180 QSL+RMGLDYVDIFYHHRPDPNTPLEETM+ALDLLVRQGKALY+G+SNY A+QA+ A +I Sbjct: 122 QSLQRMGLDYVDIFYHHRPDPNTPLEETMAALDLLVRQGKALYIGLSNYPADQAQLACEI 181 Query: 181 LRRLGTPCLIHQPNYSMMSRWIEDGLQDVLAEEGIGTIAFSPLQKGILTDRYLKGITPDS 240 LR LGTPCLIHQP YSM R IE GLQD L E G+G+IAFSPL G+LTDRYL GI DS Sbjct: 182 LRALGTPCLIHQPKYSMFERGIEAGLQDTLDEYGVGSIAFSPLAGGLLTDRYLAGIPEDS 241 Query: 241 RAAGPSVFLSEKEITAEVIGKVSKLNELAAARGQKMSQLALSWVLRGGKVTSALIGASKV 300 RAA S FLS +++T E + K+ +LNELA RGQK+SQ++L+WVLRGG+VTSALIGASKV Sbjct: 242 RAASDSKFLSPEQLTPEKLVKIRQLNELALDRGQKLSQMSLAWVLRGGRVTSALIGASKV 301 Query: 301 SQIEDAVASLNAPELSAEELEQIENIL 327 SQI+DA+ L S +E+ IE+IL Sbjct: 302 SQIDDAIGMLANTNFSDKEINAIEHIL 328 >ref|NP_668822.1| putative reductase [Yersinia pestis KIM] gb|AAM85073.1| putative reductase [Yersinia pestis KIM] Length = 329 Score = 478 bits (1230), Expect = e-134, Method: Compositional matrix adjust. Identities = 228/327 (69%), Positives = 273/327 (83%) Query: 1 MYSANSERYSQMKYNRTGRSGLLLPAISLGLWHNFGGNDVFENGRAMIRRAFDLGITHFD 60 +Y A+S RY +M+Y+R G SGL LPAISLGLWHNFG + +EN R++I RAFD GITHFD Sbjct: 2 VYQASSSRYQEMEYHRCGHSGLKLPAISLGLWHNFGDSTRYENSRSLIHRAFDHGITHFD 61 Query: 61 LANNYGPPAGSAEESFGQILRKDLAAYRDELIISSKAGYYMWPGPYGEWGSKKYLVSSLD 120 LANNYGPP GSAE +FG+IL+++L YRDELII+SKAGY MWPGPYG+WGSKKYLV+S++ Sbjct: 62 LANNYGPPPGSAELNFGRILQQELRPYRDELIIASKAGYTMWPGPYGDWGSKKYLVASIN 121 Query: 121 QSLKRMGLDYVDIFYHHRPDPNTPLEETMSALDLLVRQGKALYVGISNYNAEQAREAAQI 180 QSL+RMGLDYVDIFYHHRPDPNTPLEETM+ALDLLVRQGKALY+G+SNY A+QA+ A +I Sbjct: 122 QSLQRMGLDYVDIFYHHRPDPNTPLEETMAALDLLVRQGKALYIGLSNYPADQAQLACEI 181 Query: 181 LRRLGTPCLIHQPNYSMMSRWIEDGLQDVLAEEGIGTIAFSPLQKGILTDRYLKGITPDS 240 LR LGTPCLIHQP YSM R IE GLQD L E G+G+IAFSPL G+LTDRYL GI DS Sbjct: 182 LRALGTPCLIHQPKYSMFERGIEAGLQDTLDEYGVGSIAFSPLAGGLLTDRYLAGIPEDS 241 Query: 241 RAAGPSVFLSEKEITAEVIGKVSKLNELAAARGQKMSQLALSWVLRGGKVTSALIGASKV 300 RAA S FLS +++T E + K+ +LNELA RGQK+SQ++L+WVLRGG+VTSALIGASKV Sbjct: 242 RAASDSKFLSPEQLTPEKLVKIRQLNELALDRGQKLSQMSLAWVLRGGRVTSALIGASKV 301 Query: 301 SQIEDAVASLNAPELSAEELEQIENIL 327 SQI+DA+ L S +E+ IE+IL Sbjct: 302 SQIDDAIGMLANTNFSDKEINAIEHIL 328 >ref|NP_461347.1| putative oxidoreductase [Salmonella typhimurium LT2] gb|AAL21306.1| putative oxidoreductase [Salmonella typhimurium LT2] Length = 332 Score = 457 bits (1177), Expect = e-127, Method: Compositional matrix adjust. Identities = 222/329 (67%), Positives = 259/329 (78%) Query: 1 MYSANSERYSQMKYNRTGRSGLLLPAISLGLWHNFGGNDVFENGRAMIRRAFDLGITHFD 60 +Y + RY M+Y R GRSG+ LPAISLGLWHNFG EN RA+++RAFDLGITHFD Sbjct: 2 IYQPDENRYHTMEYRRCGRSGVKLPAISLGLWHNFGDTTRVENSRALLQRAFDLGITHFD 61 Query: 61 LANNYGPPAGSAEESFGQILRKDLAAYRDELIISSKAGYYMWPGPYGEWGSKKYLVSSLD 120 LANNYGPP GSAE +FG+IL++D +RDELIIS+KAGY MW GPYG+WGS+KYL++SLD Sbjct: 62 LANNYGPPPGSAECNFGRILQEDFLPWRDELIISTKAGYTMWDGPYGDWGSRKYLIASLD 121 Query: 121 QSLKRMGLDYVDIFYHHRPDPNTPLEETMSALDLLVRQGKALYVGISNYNAEQAREAAQI 180 QSLKRMGL+YVDIFYHHRPDP TPL+ETM ALD LVR GKALYVGISNY A+ AR+A I Sbjct: 122 QSLKRMGLEYVDIFYHHRPDPETPLKETMKALDHLVRHGKALYVGISNYPADLARQAIDI 181 Query: 181 LRRLGTPCLIHQPNYSMMSRWIEDGLQDVLAEEGIGTIAFSPLQKGILTDRYLKGITPDS 240 L LGTPCLIHQP YS+ RW+EDGL +L E+G+G+IAFSPL G LTDRYL GI DS Sbjct: 182 LEDLGTPCLIHQPKYSLFERWVEDGLLALLQEKGVGSIAFSPLAGGQLTDRYLNGIPEDS 241 Query: 241 RAAGPSVFLSEKEITAEVIGKVSKLNELAAARGQKMSQLALSWVLRGGKVTSALIGASKV 300 RAA S FL ++ITA+ + KV +LNELAA RGQK+SQ+AL+WVLR VTS LIGASK Sbjct: 242 RAASGSRFLKPEQITADKLEKVRRLNELAARRGQKLSQMALAWVLRNDNVTSVLIGASKP 301 Query: 301 SQIEDAVASLNAPELSAEELEQIENILRG 329 SQIEDAV L SA E +I+ IL G Sbjct: 302 SQIEDAVGMLANRRFSAAECAEIDAILEG 330 >ref|NP_456949.1| putative ion-channel protein [Salmonella enterica subsp. enterica serovar Typhi] ref|NP_804314.1| putative ion-channel protein [Salmonella enterica subsp. enterica serovar Typhi Ty2] pir||AB0808 probable ion-channel protein STY2647 [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) emb|CAD07644.1| putative ion-channel protein [Salmonella enterica subsp. enterica serovar Typhi] gb|AAO68163.1| putative ion-channel protein [Salmonella enterica subsp. enterica serovar Typhi Ty2] Length = 332 Score = 457 bits (1177), Expect = e-127, Method: Compositional matrix adjust. Identities = 221/329 (67%), Positives = 259/329 (78%) Query: 1 MYSANSERYSQMKYNRTGRSGLLLPAISLGLWHNFGGNDVFENGRAMIRRAFDLGITHFD 60 +Y + RY M+Y R GRSG+ LPAISLGLWHNFG EN RA+++RAFDLGITHFD Sbjct: 2 IYQPDENRYHTMEYRRCGRSGVKLPAISLGLWHNFGDTTRVENSRALLQRAFDLGITHFD 61 Query: 61 LANNYGPPAGSAEESFGQILRKDLAAYRDELIISSKAGYYMWPGPYGEWGSKKYLVSSLD 120 LANNYGPP GSAE +FG+IL++D +RDEL+IS+KAGY MW GPYG+WGS+KYL++SLD Sbjct: 62 LANNYGPPPGSAECNFGRILQEDFLPWRDELVISTKAGYTMWDGPYGDWGSRKYLIASLD 121 Query: 121 QSLKRMGLDYVDIFYHHRPDPNTPLEETMSALDLLVRQGKALYVGISNYNAEQAREAAQI 180 QSLKRMGL+YVDIFYHHRPDP TPL+ETM ALD LVR GKALYVGISNY A+ AR+A I Sbjct: 122 QSLKRMGLEYVDIFYHHRPDPETPLKETMKALDHLVRHGKALYVGISNYPADLARQAIDI 181 Query: 181 LRRLGTPCLIHQPNYSMMSRWIEDGLQDVLAEEGIGTIAFSPLQKGILTDRYLKGITPDS 240 L LGTPCLIHQP YS+ RW+EDGL +L E+G+G+IAFSPL G LTDRYL GI DS Sbjct: 182 LEDLGTPCLIHQPKYSLFERWVEDGLLTLLQEKGVGSIAFSPLAGGQLTDRYLNGIPEDS 241 Query: 241 RAAGPSVFLSEKEITAEVIGKVSKLNELAAARGQKMSQLALSWVLRGGKVTSALIGASKV 300 RAA S FL ++ITA+ + KV +LNELAA RGQK+SQ+AL+WVLR VTS LIGASK Sbjct: 242 RAASGSRFLKPEQITADKLEKVRRLNELAARRGQKLSQMALAWVLRNDNVTSVLIGASKP 301 Query: 301 SQIEDAVASLNAPELSAEELEQIENILRG 329 SQIEDAV L SA E +I+ IL G Sbjct: 302 SQIEDAVGMLANRRFSAAECAEIDAILEG 330 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.316 0.134 0.389 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 488,351,137 Number of extensions: 20496329 Number of successful extensions: 58714 Number of sequences better than 1.0e-05: 1504 Number of HSP's gapped: 56546 Number of HSP's successfully gapped: 1508 Length of query: 329 Length of database: 757,237,578 Length adjustment: 126 Effective length of query: 203 Effective length of database: 415,135,104 Effective search space: 84272426112 Effective search space used: 84272426112 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 126 (53.1 bits)