BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0382.0010.p (520 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_622137.1| ABC-type sugar (aldose) transport system, ATPas... 483 e-135 ref|NP_657758.1| ABC_tran, ABC transporter [Bacillus anthracis A... 470 e-131 ref|NP_227919.1| sugar ABC transporter, ATP-binding protein [The... 469 e-131 ref|NP_980122.1| sugar ABC transporter, ATP-binding protein [Bac... 468 e-130 ref|NP_833512.1| Nucleoside transport ATP-binding protein [Bacil... 460 e-128 >ref|NP_622137.1| ABC-type sugar (aldose) transport system, ATPase component [Thermoanaerobacter tengcongensis] gb|AAM23741.1| ABC-type sugar (aldose) transport system, ATPase component [Thermoanaerobacter tengcongensis] Length = 509 Score = 483 bits (1243), Expect = e-135, Method: Compositional matrix adjust. Identities = 252/508 (49%), Positives = 355/508 (69%), Gaps = 6/508 (1%) Query: 3 NALLEMRGITKVYPNGVVANKNVEFSLREGEIHAIAGENGAGKSTLMKIMFGMEEPSDGE 62 +A+LE+R ITK +P VVAN NV ++ GEIHAI GENGAGKSTLM I++G+ +P G+ Sbjct: 2 SAILEVRNITKRFPK-VVANDNVNLTVERGEIHAILGENGAGKSTLMNIIYGLYKPDSGQ 60 Query: 63 IYIRGDKVKLQSPQDAIDRGIGMVHQHFMLVPSFTVAENMVLGMEPRKGVGFDYSEAVRL 122 + G+++ L P +AI++GIGMVHQHFML+P FTVAEN+VLG EP KG+ +D +A L Sbjct: 61 LIFDGEELNLSGPHEAIEKGIGMVHQHFMLIPVFTVAENIVLGAEP-KGITYDRKKANEL 119 Query: 123 TEETARKYNLAVNPKAKVEDLTVGMKQKVEILKALVRGAQILILDEPTAVLTPQETEELF 182 E + KY+L ++P AKV+DL+VG++Q+VEILKA R A++LILDEPTA+LTPQET++LF Sbjct: 120 IREISEKYHLEIDPDAKVKDLSVGLQQRVEILKAFYRKAKLLILDEPTAMLTPQETQKLF 179 Query: 183 HELQQLKGQGHTIVFISHKLKEVKAICDRITIMRGGRSEGVFQTSEVSEQEISRLMVGRD 242 +++LK QG +I+FISHKL+EV I DR+T+MR G++ G +T E +EQE++ LMVGR+ Sbjct: 180 EIMRELKQQGMSIIFISHKLEEVLEISDRVTVMRRGKTVGTLKTKETNEQELANLMVGRE 239 Query: 243 VVLKYEKDKTSPGQPVLAVDRLGVTDSQGKALLSEVSFSVREGQIVGIAGVEGNGQTQLI 302 VVL+ EK + PG VL+V L V D Q + +VSF +REG+I G+AG++GNGQ +L+ Sbjct: 240 VVLRIEKSEYKPGDVVLSVKNLTVVDQQNVTRVKDVSFEIREGEIFGLAGIDGNGQLELV 299 Query: 303 EALTGGLRGVSASGSVRVQGTDIRDADILDIRGLGVSYIPEDRMRQGSAGEASIADNLIS 362 EA+ GLR SGSV G D+ + + G+SYIP+DR G + +IA+NLI Sbjct: 300 EAIM-GLRP-KKSGSVFFYGKDVTNFSTRQLYREGISYIPQDRQADGLVLDFTIAENLIL 357 Query: 363 TRYRSKDMNKGPFLKGSRIAALAASLVEEFKVRCSGPQQPIGMLSGGNMQKVVVARECST 422 Y+ ++ ++ ++ A V+EF VR LSGGN QKV++ARE Sbjct: 358 REYKDPTYSRRGVIQYKKVYENAEKKVKEFDVRPPEYMLKARNLSGGNQQKVILAREVGY 417 Query: 423 NPQLLIAEQPTRGVDIGAAQFIHQKLLELRSDHCAIVLVSADLNEILELSDSLLVMYEGQ 482 NP+LLIA QPTRG+D+GA ++IH+++LELR AI LVS +L EI+ LSD + V+Y+GQ Sbjct: 418 NPKLLIAVQPTRGMDVGAIEYIHRRILELRDKGAAIFLVSLELEEIMSLSDRIGVIYKGQ 477 Query: 483 IVAYFDKPSAVSEEELGLYMLGIHRQDK 510 ++ D +A ++E++GL M G R DK Sbjct: 478 LMDILDGKTA-TKEQIGLLMAG-SRFDK 503 >ref|NP_657758.1| ABC_tran, ABC transporter [Bacillus anthracis A2012] ref|NP_846171.1| sugar ABC transporter, ATP-binding protein [Bacillus anthracis str. Ames] gb|AAP27657.1| sugar ABC transporter, ATP-binding protein [Bacillus anthracis str. Ames] Length = 510 Score = 470 bits (1210), Expect = e-131, Method: Compositional matrix adjust. Identities = 240/500 (48%), Positives = 342/500 (68%), Gaps = 4/500 (0%) Query: 5 LLEMRGITKVYPNGVVANKNVEFSLREGEIHAIAGENGAGKSTLMKIMFGMEEPSDGEIY 64 ++EM ITKV+P G+VAN ++ +++GEIHA+ GENGAGKSTLM ++FG+ +P GEI Sbjct: 4 VIEMNNITKVFP-GIVANDDITLQVKQGEIHALLGENGAGKSTLMNVLFGLYQPEQGEIK 62 Query: 65 IRGDKVKLQSPQDAIDRGIGMVHQHFMLVPSFTVAENMVLGMEPRKGVGFDYSEAVRLTE 124 I+G+ VK+ +P A D GIGMVHQHFMLV +FTV EN++LG EP+K EA + + Sbjct: 63 IKGNPVKITNPNIANDLGIGMVHQHFMLVHNFTVTENIILGNEPKKNGKIAVEEAAKEIK 122 Query: 125 ETARKYNLAVNPKAKVEDLTVGMKQKVEILKALVRGAQILILDEPTAVLTPQETEELFHE 184 + + +Y LAV+P AK+ED++VGM+Q+VEILK L RGA+ILI DEPTAVLTPQE EL Sbjct: 123 QLSEQYGLAVDPHAKIEDISVGMQQRVEILKTLYRGAEILIFDEPTAVLTPQEIHELIQI 182 Query: 185 LQQLKGQGHTIVFISHKLKEVKAICDRITIMRGGRSEGVFQTSEVSEQEISRLMVGRDVV 244 +++L +G +I+ I+HKLKE+ +CDR TI+R G+ G +E E +++ LMVGR V Sbjct: 183 MKKLVQEGKSIILITHKLKEIMEVCDRCTIIRKGKGIGTVNVAETDEHKLAELMVGRQVN 242 Query: 245 LKYEKDKTSPGQPVLAVDRLGVTDSQGKALLSEVSFSVREGQIVGIAGVEGNGQTQLIEA 304 K EK + P + VL++ L V D++ + + +VR G+IVGIAG++GNGQ++LIEA Sbjct: 243 FKTEKIEAKPKEEVLSIANLIVHDTRKLPAVKGLDLTVRAGEIVGIAGIDGNGQSELIEA 302 Query: 305 LTGGLRGVSASGSVRVQGTDIRDADILDIRGLGVSYIPEDRMRQGSAGEASIADNLISTR 364 +T GLR V SGS+ ++G +I + + I G+ +IPEDR + G + S+ DN++ Sbjct: 303 IT-GLRKVE-SGSIAIKGKEITNWPVRRITEEGIGHIPEDRHKHGLVLDFSVRDNIVLQT 360 Query: 365 YRSKDMNKGPFLKGSRIAALAASLVEEFKVRCSGPQQPIGMLSGGNMQKVVVARECSTNP 424 Y +K L S+I A +L+E+F VR Q LSGGN QK ++ARE NP Sbjct: 361 YYKNPFSKKGILNFSKITQKAKALIEQFDVRTPSEQTLARALSGGNQQKAIIAREVDRNP 420 Query: 425 QLLIAEQPTRGVDIGAAQFIHQKLLELRSDHCAIVLVSADLNEILELSDSLLVMYEGQIV 484 LLIA QPTRG+D+GA +FIH+KL+E R + A++L+S +L+EIL +SD + V+YEG+IV Sbjct: 421 DLLIAAQPTRGLDVGAIEFIHKKLIEQRDNGKAVLLLSLELDEILNVSDRVAVIYEGKIV 480 Query: 485 AYFDKPSAVSEEELGLYMLG 504 A D +E++LGL M G Sbjct: 481 AIVD-AKETNEQQLGLLMAG 499 >ref|NP_227919.1| sugar ABC transporter, ATP-binding protein [Thermotoga maritima] pir||G72418 sugar ABC transporter, ATP-binding protein - Thermotoga maritima (strain MSB8) gb|AAD35197.1| sugar ABC transporter, ATP-binding protein [Thermotoga maritima] Length = 507 Score = 469 bits (1207), Expect = e-131, Method: Compositional matrix adjust. Identities = 246/497 (49%), Positives = 336/497 (67%), Gaps = 4/497 (0%) Query: 8 MRGITKVYPNGVVANKNVEFSLREGEIHAIAGENGAGKSTLMKIMFGMEEPSDGEIYIRG 67 M+ I K +P GV+AN +V+ + +GEIHAI GENGAGK+TLMK ++G+ +P +GEIYI G Sbjct: 7 MKRIVKRFP-GVLANDHVDLFVEKGEIHAIVGENGAGKTTLMKQLYGLLKPDEGEIYING 65 Query: 68 DKVKLQSPQDAIDRGIGMVHQHFMLVPSFTVAENMVLGMEPRKGVGFDYSEAVRLTEETA 127 +V+ P DAI GIGMVHQHFMLV + T EN+++GMEPRKG+ D +A + + + Sbjct: 66 KRVEFSGPADAIKSGIGMVHQHFMLVDNLTAYENVIIGMEPRKGILLDRKKARKEVKRLS 125 Query: 128 RKYNLAVNPKAKVEDLTVGMKQKVEILKALVRGAQILILDEPTAVLTPQETEELFHELQQ 187 +Y L ++ K+ED+ VG++Q+VEI+K L RGA+ILILDEPTAVLTPQETEELF L++ Sbjct: 126 EEYGLTIDVDMKIEDMPVGLQQRVEIIKTLYRGAEILILDEPTAVLTPQETEELFEVLKR 185 Query: 188 LKGQGHTIVFISHKLKEVKAICDRITIMRGGRSEGVFQTSEVSEQEISRLMVGRDVVLKY 247 LK G TI+FISHKL EV I DRIT+MR GR G TS+ + QEI+RLMVGRDVVL Sbjct: 186 LKKSGKTIIFISHKLNEVMEISDRITVMRQGRVTGNLITSQTTPQEIARLMVGRDVVLTV 245 Query: 248 EKDKTSPGQPVLAVDRLGVTDSQGKALLSEVSFSVREGQIVGIAGVEGNGQTQLIEALTG 307 EK G+ +L ++ L V D++ + VSF V+ G+IVGIAGV GNGQ++L+EA+T Sbjct: 246 EKKPKEAGETLLKIEDLWVKDNRKLDAVKGVSFEVKRGEIVGIAGVAGNGQSELVEAIT- 304 Query: 308 GLRGVSASGSVRVQGTDIRDADILDIRGLGVSYIPEDRMRQGSAGEASIADNLISTRYRS 367 GLRG + G V +G DI D +R LG+ ++PEDR+++G + N I R+ Sbjct: 305 GLRG-AERGRVYFKGEDITGYDPKRLRDLGMFHVPEDRLKRGLIVDFPAYFNTILGRHMI 363 Query: 368 KDMNKGPFLKGSRIAALAASLVEEFKVRCSGPQQPIGMLSGGNMQKVVVARECSTNPQLL 427 + K FL I + L E+F +R + G SGGN QK++VARE S +P+LL Sbjct: 364 EPFVKSGFLNMKEIKRFSKQLFEKFDIRPRNIELLAGSFSGGNQQKIIVAREMSFSPELL 423 Query: 428 IAEQPTRGVDIGAAQFIHQKLLELRSDHCAIVLVSADLNEILELSDSLLVMYEGQIVAYF 487 + QPTRG+D+GA +FIH+ L+ +R ++L+S +L+EI LSD +LVMYEGQI+ Sbjct: 424 VVAQPTRGLDVGAIEFIHKTLVSMRDAGVGVLLISMELDEIFSLSDRILVMYEGQIMGEV 483 Query: 488 DKPSAVSEEELGLYMLG 504 KP + EE+GL M G Sbjct: 484 -KPEETTPEEVGLMMAG 499 Score = 75.5 bits (184), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 59/229 (25%), Positives = 113/229 (49%), Gaps = 8/229 (3%) Query: 21 ANKNVEFSLREGEIHAIAGENGAGKSTLMKIMFGMEEPSDGEIYIRGDKVKLQSPQDAID 80 A K V F ++ GEI IAG G G+S L++ + G+ G +Y +G+ + P+ D Sbjct: 272 AVKGVSFEVKRGEIVGIAGVAGNGQSELVEAITGLRGAERGRVYFKGEDITGYDPKRLRD 331 Query: 81 RGIGMVHQHFM---LVPSFTVAENMVLG---MEPRKGVGF-DYSEAVRLTEETARKYNL- 132 G+ V + + L+ F N +LG +EP GF + E R +++ K+++ Sbjct: 332 LGMFHVPEDRLKRGLIVDFPAYFNTILGRHMIEPFVKSGFLNMKEIKRFSKQLFEKFDIR 391 Query: 133 AVNPKAKVEDLTVGMKQKVEILKALVRGAQILILDEPTAVLTPQETEELFHELQQLKGQG 192 N + + G +QK+ + + + ++L++ +PT L E + L ++ G Sbjct: 392 PRNIELLAGSFSGGNQQKIIVAREMSFSPELLVVAQPTRGLDVGAIEFIHKTLVSMRDAG 451 Query: 193 HTIVFISHKLKEVKAICDRITIMRGGRSEGVFQTSEVSEQEISRLMVGR 241 ++ IS +L E+ ++ DRI +M G+ G + E + +E+ +M G+ Sbjct: 452 VGVLLISMELDEIFSLSDRILVMYEGQIMGEVKPEETTPEEVGLMMAGK 500 >ref|NP_980122.1| sugar ABC transporter, ATP-binding protein [Bacillus cereus ATCC 10987] gb|AAS42730.1| sugar ABC transporter, ATP-binding protein [Bacillus cereus ATCC 10987] Length = 510 Score = 468 bits (1205), Expect = e-130, Method: Compositional matrix adjust. Identities = 240/500 (48%), Positives = 341/500 (68%), Gaps = 4/500 (0%) Query: 5 LLEMRGITKVYPNGVVANKNVEFSLREGEIHAIAGENGAGKSTLMKIMFGMEEPSDGEIY 64 ++EM ITKV+P G+VAN ++ +++GEIHA+ GENGAGKSTLM ++FG+ +P GEI Sbjct: 4 VIEMNNITKVFP-GIVANDDITLQVKQGEIHALLGENGAGKSTLMNVLFGLYQPEQGEIK 62 Query: 65 IRGDKVKLQSPQDAIDRGIGMVHQHFMLVPSFTVAENMVLGMEPRKGVGFDYSEAVRLTE 124 I+G VK+ +P A D GIGMVHQHFMLV +FTV EN++LG EP+K EA + + Sbjct: 63 IKGKPVKITNPNIANDLGIGMVHQHFMLVHNFTVTENIILGNEPKKNGKIAVEEAAKEIK 122 Query: 125 ETARKYNLAVNPKAKVEDLTVGMKQKVEILKALVRGAQILILDEPTAVLTPQETEELFHE 184 + + +Y LAV+P AK+ED++VGM+Q+VEILK L RGA+ILI DEPTAVLTPQE EL Sbjct: 123 QLSEQYGLAVDPHAKIEDISVGMQQRVEILKTLYRGAEILIFDEPTAVLTPQEIHELIQI 182 Query: 185 LQQLKGQGHTIVFISHKLKEVKAICDRITIMRGGRSEGVFQTSEVSEQEISRLMVGRDVV 244 +++L +G +I+ I+HKLKE+ +CDR TI+R G+ G +E E +++ LMVGR V Sbjct: 183 MKKLVQEGKSIILITHKLKEIMEVCDRCTIIRKGKGIGTVDVAETDEHKLAELMVGRQVN 242 Query: 245 LKYEKDKTSPGQPVLAVDRLGVTDSQGKALLSEVSFSVREGQIVGIAGVEGNGQTQLIEA 304 K EK + P + VL++ L V D++ + + +VR G+IVGIAG++GNGQ++LIEA Sbjct: 243 FKTEKIEAKPMEEVLSIANLIVHDTRKLPAVKGLDLTVRAGEIVGIAGIDGNGQSELIEA 302 Query: 305 LTGGLRGVSASGSVRVQGTDIRDADILDIRGLGVSYIPEDRMRQGSAGEASIADNLISTR 364 +T GLR V SGS+ ++G +I + + I G+ +IPEDR + G + S+ DN++ Sbjct: 303 IT-GLRKVE-SGSIAIKGKEITNWPVRRITEEGIGHIPEDRHKHGLVLDFSVRDNIVLQT 360 Query: 365 YRSKDMNKGPFLKGSRIAALAASLVEEFKVRCSGPQQPIGMLSGGNMQKVVVARECSTNP 424 Y +K L S+I A +L+E+F VR Q LSGGN QK ++ARE NP Sbjct: 361 YYKNPFSKKGILNFSKITEKAKALIEQFDVRTPSEQTLARALSGGNQQKAIIAREVDRNP 420 Query: 425 QLLIAEQPTRGVDIGAAQFIHQKLLELRSDHCAIVLVSADLNEILELSDSLLVMYEGQIV 484 LLIA QPTRG+D+GA +FIH+KL+E R + A++L+S +L+EIL +SD + V+YEG+IV Sbjct: 421 DLLIAAQPTRGLDVGAIEFIHKKLIEQRDNGKAVLLLSLELDEILNVSDRVAVIYEGKIV 480 Query: 485 AYFDKPSAVSEEELGLYMLG 504 A D +E++LGL M G Sbjct: 481 AIVD-AKETNEQQLGLLMAG 499 >ref|NP_833512.1| Nucleoside transport ATP-binding protein [Bacillus cereus ATCC 14579] gb|AAP10713.1| Nucleoside transport ATP-binding protein [Bacillus cereus ATCC 14579] Length = 510 Score = 460 bits (1183), Expect = e-128, Method: Compositional matrix adjust. Identities = 240/510 (47%), Positives = 342/510 (67%), Gaps = 6/510 (1%) Query: 5 LLEMRGITKVYPNGVVANKNVEFSLREGEIHAIAGENGAGKSTLMKIMFGMEEPSDGEIY 64 ++EM ITKV+P G+VAN ++ +++GEIHA+ GENGAGKSTLM ++FG+ +P GEI Sbjct: 4 VIEMNNITKVFP-GIVANDDITLQVKQGEIHALLGENGAGKSTLMNVLFGLYQPEQGEIK 62 Query: 65 IRGDKVKLQSPQDAIDRGIGMVHQHFMLVPSFTVAENMVLGMEPRKGVGFDYSEAVRLTE 124 I+G VK+ +P A D GIGMVHQHFMLV +FTV EN++LG EP+K EA + + Sbjct: 63 IKGKPVKITNPNIANDLGIGMVHQHFMLVHNFTVTENIILGNEPKKKGKIAVEEAAKEIQ 122 Query: 125 ETARKYNLAVNPKAKVEDLTVGMKQKVEILKALVRGAQILILDEPTAVLTPQETEELFHE 184 + + +Y L+V+P AK++D++VGM+Q+VEILK L RGA+ILI DEPTAVLTPQE EL Sbjct: 123 KLSEQYGLSVDPYAKIQDISVGMQQRVEILKTLYRGAEILIFDEPTAVLTPQEIHELIQI 182 Query: 185 LQQLKGQGHTIVFISHKLKEVKAICDRITIMRGGRSEGVFQTSEVSEQEISRLMVGRDVV 244 +++L +G +IV I+HKLKE+ +CDR TI+R G+ G + E +++ LMVGR V Sbjct: 183 MKKLVQEGKSIVLITHKLKEIMEVCDRCTIIRKGKGIGTVDVANTDENKLAELMVGRQVN 242 Query: 245 LKYEKDKTSPGQPVLAVDRLGVTDSQGKALLSEVSFSVREGQIVGIAGVEGNGQTQLIEA 304 K EK P + VL++ L V D++ + + +VR G+IVGIAG++GNGQ++LIEA Sbjct: 243 FKTEKIDAKPKEEVLSIANLVVHDARQLPAVKGLDLTVRAGEIVGIAGIDGNGQSELIEA 302 Query: 305 LTGGLRGVSASGSVRVQGTDIRDADILDIRGLGVSYIPEDRMRQGSAGEASIADNLISTR 364 +T GLR V SGS+ ++G +I + + I G+ +IPEDR + G + S+ DN++ Sbjct: 303 IT-GLRKVE-SGSIAIKGKEITNWLVRRITEEGIGHIPEDRHKHGLVLDFSVRDNIVLQT 360 Query: 365 YRSKDMNKGPFLKGSRIAALAASLVEEFKVRCSGPQQPIGMLSGGNMQKVVVARECSTNP 424 Y +K L S+I A +L+E+F VR Q LSGGN QK ++ARE NP Sbjct: 361 YYKNPFSKKGILNFSKITEKAKALIEQFDVRTPSEQTLARALSGGNQQKAIIAREVDRNP 420 Query: 425 QLLIAEQPTRGVDIGAAQFIHQKLLELRSDHCAIVLVSADLNEILELSDSLLVMYEGQIV 484 LLIA QPTRG+D+GA +FIH++L+E R ++L+S +L+EIL +SD + V+YEG+IV Sbjct: 421 DLLIAAQPTRGLDVGAIEFIHKRLIEQRDKGKGVLLLSLELDEILNVSDRIAVIYEGEIV 480 Query: 485 AYFDKPSAVSEEELGLYMLGIHRQDKEQTG 514 A D +E++LGL M G + KEQ G Sbjct: 481 AIVD-AKETNEQQLGLLMAGGTK--KEQVG 507 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.316 0.135 0.370 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 716,782,003 Number of extensions: 29576153 Number of successful extensions: 198355 Number of sequences better than 1.0e-05: 18720 Number of HSP's gapped: 172518 Number of HSP's successfully gapped: 25365 Length of query: 520 Length of database: 757,237,578 Length adjustment: 130 Effective length of query: 390 Effective length of database: 404,274,708 Effective search space: 157667136120 Effective search space used: 157667136120 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 128 (53.9 bits)