BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0382.0008.p (311 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_622139.1| uncharacterized ABC-type transport system, perm... 188 2e-46 ref|NP_541064.1| SUGAR ABC TRANSPORTER, PERMEASE PROTEIN [Brucel... 178 1e-43 ref|NP_105103.1| sugar ABC transporter, permease protein, rbsC-2... 170 4e-41 ref|ZP_00161870.1| hypothetical protein Avar152201 [Anabaena var... 161 2e-38 ref|ZP_00108155.1| COG1079: Uncharacterized ABC-type transport s... 160 5e-38 >ref|NP_622139.1| uncharacterized ABC-type transport system, permease component [Thermoanaerobacter tengcongensis] gb|AAM23743.1| uncharacterized ABC-type transport system, permease component [Thermoanaerobacter tengcongensis] Length = 307 Score = 188 bits (477), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 109/287 (37%), Positives = 163/287 (56%), Gaps = 2/287 (0%) Query: 6 NVILTTDFAFSVLRVTTPILFAALGALISNRAGIINIGMEGIMLVSALTGVIVSAYTHSA 65 ++L + L + TP+ ALG S R+G++NI MEGIML++A V+ + T +A Sbjct: 3 EILLNPQLWAATLAMATPLALPALGGTFSERSGVVNIAMEGIMLIAAFFAVMFAHMTGNA 62 Query: 66 WXXXXXXXXXXXXXXXXXXFFTLKFKTHIILGGVAINMFASGGTVFILYLLSGDKGSSTS 125 W + + + I+ G+AIN+FASG T ++L + G G T Sbjct: 63 WIGLLGAIVVGLIVALIFAWAAVSLTANQIILGMAINIFASGVTAYLLNTIYGFTG--TP 120 Query: 126 LASKVLPSVEIPLLKDIPVLGPILSGHHILTYLSILAVLVVYYLLNRTPLGLRIRSVGEN 185 + + +LP+VEIP++KDIP +G +LSGH ++ YL I+ + + Y L T LGLR+R+VGEN Sbjct: 121 VDTPMLPTVEIPIIKDIPFVGHVLSGHSVIVYLMIIILFISDYFLFHTNLGLRLRAVGEN 180 Query: 186 PHAAQSVGVSVIKIQYTXXXXXXXXXXXXXXYMSMGYLSLFTRDMVAGRGWIAIAAESMG 245 P AA++ G+ VIK++Y Y+S+G L+ F DM +GRG+IA+AA G Sbjct: 181 PEAAETAGIDVIKLRYLGVALSGLLSAMGGAYLSIGALNSFNPDMTSGRGYIALAAMIFG 240 Query: 246 RSTTVGTALTSLLFGAADALANALQVLKIPAELIATLPYVATVIGLI 292 + T G+ SLLFG A AL+ LQ LI LPY T++ L+ Sbjct: 241 KWTPFGSFGASLLFGFATALSMQLQNTAFSKNLIMMLPYALTILALV 287 >ref|NP_541064.1| SUGAR ABC TRANSPORTER, PERMEASE PROTEIN [Brucella melitensis] ref|NP_699214.1| ABC transporter, permease protein [Brucella suis 1330] pir||AE3520 sugar ABC transporter, permease protein BMEII0087 [imported] - Brucella melitensis (strain 16M) gb|AAL53328.1| SUGAR ABC TRANSPORTER, PERMEASE PROTEIN [Brucella melitensis 16M] gb|AAN33219.1| ABC transporter, permease protein [Brucella suis 1330] Length = 303 Score = 178 bits (452), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 113/294 (38%), Positives = 171/294 (58%), Gaps = 10/294 (3%) Query: 1 MNSLLNVILTTDFAFSVLRVTTPILFAALGALISNRAGIINIGMEGIMLVSALTGVIVSA 60 M ++L IL F ++LRV TP+L AALG +IS+RAG++NIGMEG+MLV+AL V+ SA Sbjct: 1 MTTVLAQILDPHFIGTILRVATPLLLAALGVMISDRAGVLNIGMEGMMLVAALIAVLASA 60 Query: 61 YTHSAWXXXXXXXXXXXXXXXXXXFFTLKFKTHIILGGVAINMFASGGTVFILYLLSGDK 120 T S + T +I+ G+A+N+ A+ T LYL +GDK Sbjct: 61 ATGSPAVGLLAALVVGALLGWLMSLSVNRLGTDLIMTGIALNIAAAAATTLGLYLATGDK 120 Query: 121 GSSTSLASKVLPSVEIPLLKDIPVLGPILSGHHILTYLSILAVLVVYYLLNRTPLGLRIR 180 G S +L S LPS+ +P + +I H+LT+ ++LAV V L+ RT GL +R Sbjct: 121 GMSGALKSGALPSLAVPFIGNI----------HVLTFAALLAVPAVSLLMMRTRFGLHLR 170 Query: 181 SVGENPHAAQSVGVSVIKIQYTXXXXXXXXXXXXXXYMSMGYLSLFTRDMVAGRGWIAIA 240 + G +P +A++ G+ ++Q Y+S+GY++ F ++M AGRG+IAIA Sbjct: 171 ATGVDPKSARAAGIQTGRVQMMALILSGLFGGAAGAYLSLGYVTWFAQNMTAGRGFIAIA 230 Query: 241 AESMGRSTTVGTALTSLLFGAADALANALQVLKIPAELIATLPYVATVIGLIIY 294 AE MG+ T GT + SL+ AA+++A LQ L +P EL+ +PY+ VI L ++ Sbjct: 231 AEVMGQGTAWGTLVASLVLAAAESIAITLQSLGLPFELMQMIPYLVPVIVLTVH 284 >ref|NP_105103.1| sugar ABC transporter, permease protein, rbsC-2 [Mesorhizobium loti MAFF303099] dbj|BAB50889.1| sugar ABC transporter, permease protein; RbsC-2 [Mesorhizobium loti] Length = 314 Score = 170 bits (430), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 100/296 (33%), Positives = 156/296 (52%), Gaps = 5/296 (1%) Query: 1 MNSLLNVILTTDFAFSVLRVTTPILFAALGALISNRAGIINIGMEGIMLVSALTGVIVSA 60 M+++ I F +++R+ TP+ FA LG + S RAG++N+G+EGIML+ A+TG ++ Sbjct: 1 MSAVFEQIFQVGFLAAIIRIATPLAFATLGEMFSERAGVLNLGIEGIMLLCAMTGFTATS 60 Query: 61 YTHSAWXXXXXXXXXXXXXXXXXXFFTLKFKTHIILGGVAINMFASGGTVFILYLLSGDK 120 + S W FT+ + G+ + +F+SG F+ L+ G + Sbjct: 61 LSGSLWLGVLVAVLTGMLMGALHALFTVALGLSQHVCGIGVTLFSSGLAYFLYRLIFGQQ 120 Query: 121 GSSTSLASKVLPSVEIPLLKDIPVLGPILSGHHILTYLSILAVLVVYYLLNRTPLGLRIR 180 S A K ++ IP+L DIPVLGP + L Y++I+A+ + ++L RTP GL +R Sbjct: 121 --SVPPAIKGFQTLPIPVLSDIPVLGPAVFNQFALVYMAIIAIPLAAFVLYRTPWGLSVR 178 Query: 181 SVGENPHAAQSVGVSVIKIQYTXXXXXXXXXXXXXXYMSMGYLSLFTRDMVAGRGWIAIA 240 VGENP AA S GVSVI ++ ++SM + FT +V+GRGW+AIA Sbjct: 179 MVGENPRAADSAGVSVIATRFQAVILGGALMGLAGAFLSMAQFNAFTFGVVSGRGWVAIA 238 Query: 241 AESMGRSTTVGTALTSLLFGAADALANALQVL---KIPAELIATLPYVATVIGLII 293 GR +A +LLF DAL +Q IP E LP++ T++ + + Sbjct: 239 LVVFGRWDPWRSAGAALLFAFVDALQLRMQASGLGHIPYEAFLMLPFIFTIVAMAV 294 >ref|ZP_00161870.1| hypothetical protein Avar152201 [Anabaena variabilis ATCC 29413] Length = 312 Score = 161 bits (407), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 102/287 (35%), Positives = 153/287 (53%), Gaps = 11/287 (3%) Query: 11 TDFAFSVLRVTTPILFAALGALISNRAGIINIGMEGIMLVSALTGVIVSAYTHSAWXXXX 70 +D+ + + + P+ FAALG + S R+G++NI +EG++L A T + + YT + W Sbjct: 8 SDYLIASVNLAIPLAFAALGGMYSERSGVLNIALEGMLLTGAFTSAVTTLYTGNPWIGVF 67 Query: 71 XXXXXXXXXXXXXXFFTLKFKTHIILGGVAINMFASGGTVFILYLLSGDKGSSTSLASKV 130 F + + ++ G+AIN+ A+G T F+ L+ GSST + Sbjct: 68 CALIAGGLVGLLHAFLCVTLYVNQLVSGLAINLVAAGLTSFLARLVF--HGSST----QR 121 Query: 131 LPSVE---IPLLKDIPVLGPILSGHHILTYLSILAVLVVYYLLNRTPLGLRIRSVGENPH 187 LP +E IP L +IP+LG +L I YL I++V+V Y+L T LGL +R+VGE P Sbjct: 122 LPGIEPIIIPGLANIPILGALLFQQDIFVYLLIISVIVSNYILFHTSLGLTLRAVGEYPK 181 Query: 188 AAQSVGVSVIKIQYTXXXXXXXXXXXXXXYMSMGYLSLFTRDMVAGRGWIAIAAESMGRS 247 AA + GVSV K+QY Y+++ + FT +M AG+G+IAIAA GR Sbjct: 182 AAATAGVSVSKVQYAAVFISGCLASLGGAYLTLVQIKFFTENMSAGKGFIAIAALIFGRW 241 Query: 248 TTVGTALTSLLFGAADALANALQVL--KIPAELIATLPYVATVIGLI 292 +G L LFGA +AL +Q L IP + +A LPY L+ Sbjct: 242 HPLGITLACFLFGATEALQLRIQALGANIPYQFLAMLPYAIAFFALV 288 >ref|ZP_00108155.1| COG1079: Uncharacterized ABC-type transport system, permease component [Nostoc punctiforme] Length = 322 Score = 160 bits (404), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 101/296 (34%), Positives = 156/296 (52%), Gaps = 11/296 (3%) Query: 2 NSLLNVILTTDFAFSVLRVTTPILFAALGALISNRAGIINIGMEGIMLVSALTGVIVSAY 61 NS+ N+ +D+ + LR+ P+ FAALG L S R+G++NI +EG++L A T + Y Sbjct: 9 NSMNNLNFFSDYLIATLRLAVPLAFAALGGLYSERSGVLNIALEGMLLTGAFTSAAATFY 68 Query: 62 THSAWXXXXXXXXXXXXXXXXXXFFTLKFKTHIILGGVAINMFASGGTVFILYLLSGDKG 121 + W F + + ++ G+AIN+ A+G T F+ L+ G Sbjct: 69 IGNPWLGILASLIAGGLVGLLHAFLCVTLRVDQLVSGLAINLVAAGLTSFLARLVF--SG 126 Query: 122 SSTSLASKVLP---SVEIPLLKDIPVLGPILSGHHILTYLSILAVLVVYYLLNRTPLGLR 178 SST + LP ++ IP L +IP++GP+L L YL + V+ Y+L +T GL Sbjct: 127 SST----QQLPGIGTIMIPGLANIPLIGPLLFQQDFLVYLLFILVIFTTYILFKTSFGLT 182 Query: 179 IRSVGENPHAAQSVGVSVIKIQYTXXXXXXXXXXXXXXYMSMGYLSLFTRDMVAGRGWIA 238 +R VGE+P AA + G+SV ++Y Y+++ + F M AG+G+IA Sbjct: 183 LRGVGESPKAADTAGISVTFVRYIAVVVSGCLASLGGAYLTLVQVRFFAEGMSAGKGFIA 242 Query: 239 IAAESMGRSTTVGTALTSLLFGAADALANALQVL--KIPAELIATLPYVATVIGLI 292 IAA GR VG+AL LLFGA +AL +Q L IP + + LPY ++ L+ Sbjct: 243 IAALIFGRWHPVGSALACLLFGATEALQLRIQALGANIPYQFLVMLPYAIALLALV 298 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.324 0.139 0.390 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 335,118,641 Number of extensions: 11345739 Number of successful extensions: 46775 Number of sequences better than 1.0e-05: 364 Number of HSP's gapped: 46171 Number of HSP's successfully gapped: 364 Length of query: 311 Length of database: 757,237,578 Length adjustment: 125 Effective length of query: 186 Effective length of database: 417,850,203 Effective search space: 77720137758 Effective search space used: 77720137758 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 126 (53.1 bits)