BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0382.0007.p (318 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|EAJ56628.1| unknown [environmental sequence] 301 1e-80 gb|EAH95522.1| unknown [environmental sequence] 298 1e-79 ref|NP_716442.1| inosine-uridine preferring nucleoside hydrolase... 295 8e-79 gb|EAJ34082.1| unknown [environmental sequence] 281 1e-74 ref|NP_752665.1| Hypothetical protein ybeK [Escherichia coli CFT... 281 2e-74 >gb|EAJ56628.1| unknown [environmental sequence] Length = 318 Score = 301 bits (772), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 153/308 (49%), Positives = 200/308 (64%), Gaps = 5/308 (1%) Query: 1 MPTPIIIDCDPGHDDXXXXXXXXXHPEQLEIRGITTVGGNQILDKITDNALKVLSFVN-A 59 M PII+DCDPGHDD HPE L +TT GNQ DK +NAL++L+ +N + Sbjct: 1 MSRPIILDCDPGHDDAIALILALAHPE-LTPLAVTTSAGNQTPDKTLNNALRILTLLNRS 59 Query: 60 DIXXXXXXXXXXXXXXXTGEQAHGESGMDGPALPASRFKPVEQGAVEFMLEIIRSSEEKI 119 DI + HGE+G+DGPALPA F+P A+E M E IR S++ + Sbjct: 60 DIPVAGGAVKPLSRELMIADNVHGETGLDGPALPAPSFQPQAVNAIELMAEKIRQSDKPV 119 Query: 120 TLVPTAPLTNIALLITAYPEVKEKIEKISLMGGGLAYGNVTTTAEFNIYVDPEAARIVFE 179 TLVPT PLTNIALL+ ++ E+ KIE+I LMGG GN T AEFNI+VDPEAA IVF+ Sbjct: 120 TLVPTGPLTNIALLLASHAELHAKIERIVLMGGAAGVGNWTPAAEFNIFVDPEAADIVFK 179 Query: 180 SGIPIVMSGLDVTDKAAIFEEEILELKS-RGPVSVMVGELLDFYSIYGK--KMGYVGSAL 236 SGIPI M GLDVT +A I +E+I +++ PV+ V ELLDF+ IY + K G+VG+ L Sbjct: 180 SGIPITMCGLDVTHQAQIMDEDIERIRAIPNPVAKCVAELLDFFMIYHRDPKWGFVGAPL 239 Query: 237 HDPCAVAWLLRPELFESEHLHITVETEGRLTRGMTVADRRKKPDRPANTQVLLGVDREAF 296 HDPC +AWLL P LF+++ + +ET+ LT GMTV DR + +PAN VL G+DR+ F Sbjct: 240 HDPCTIAWLLNPALFDAQDCWVGIETQSELTLGMTVVDRYQLTGKPANATVLFGIDRQGF 299 Query: 297 MKLLFDAL 304 + LL D+L Sbjct: 300 VDLLVDSL 307 >gb|EAH95522.1| unknown [environmental sequence] Length = 318 Score = 298 bits (763), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 150/308 (48%), Positives = 200/308 (64%), Gaps = 5/308 (1%) Query: 1 MPTPIIIDCDPGHDDXXXXXXXXXHPEQLEIRGITTVGGNQILDKITDNALKVLSFVN-A 59 M PII+DCDPGHDD HPE + + +TT GNQ DK +NAL++L+ +N + Sbjct: 1 MTRPIILDCDPGHDDAIALILALAHPELVPL-AVTTSAGNQTPDKTLNNALRILTLLNRS 59 Query: 60 DIXXXXXXXXXXXXXXXTGEQAHGESGMDGPALPASRFKPVEQGAVEFMLEIIRSSEEKI 119 DI + HGE+G+DGP LP F P AVE M + +R S++ + Sbjct: 60 DIPVAGGAVKPLSRELIIADNVHGETGLDGPVLPEPSFTPQSINAVELMAQQLRQSDKPV 119 Query: 120 TLVPTAPLTNIALLITAYPEVKEKIEKISLMGGGLAYGNVTTTAEFNIYVDPEAARIVFE 179 TLVPT PLTNIALL+ ++ E+ KIE+I LMGG GN T AEFNI+VDPEAA IVF+ Sbjct: 120 TLVPTGPLTNIALLLASHAELHAKIERIVLMGGAAGVGNWTPAAEFNIFVDPEAADIVFK 179 Query: 180 SGIPIVMSGLDVTDKAAIFEEEILELKS-RGPVSVMVGELLDFYSIYGK--KMGYVGSAL 236 SGIPI M GLDVT +A I +E+I +++ PV+ V ELLDF+ IY + K G+VG+ L Sbjct: 180 SGIPITMCGLDVTHQAQIMDEDIERIRAIPNPVAKCVAELLDFFMIYHRDPKWGFVGAPL 239 Query: 237 HDPCAVAWLLRPELFESEHLHITVETEGRLTRGMTVADRRKKPDRPANTQVLLGVDREAF 296 HDPC +AWLL+PELF+++ + +ET+ LT GMTV DR + +PAN VL G+DR+ F Sbjct: 240 HDPCTIAWLLKPELFDAQDCRVEIETQSELTLGMTVVDRYQLTAKPANATVLFGLDRQGF 299 Query: 297 MKLLFDAL 304 + LL D+L Sbjct: 300 VDLLVDSL 307 >ref|NP_716442.1| inosine-uridine preferring nucleoside hydrolase family protein [Shewanella oneidensis MR-1] gb|AAN53887.1| inosine-uridine preferring nucleoside hydrolase family protein [Shewanella oneidensis MR-1] Length = 318 Score = 295 bits (756), Expect = 8e-79, Method: Compositional matrix adjust. Identities = 148/308 (48%), Positives = 200/308 (64%), Gaps = 5/308 (1%) Query: 1 MPTPIIIDCDPGHDDXXXXXXXXXHPEQLEIRGITTVGGNQILDKITDNALKVLSFVN-A 59 M PII+DCDPGHDD HP+ + + +TT GNQ DK +NAL++L+ +N + Sbjct: 1 MTCPIILDCDPGHDDAIALILALAHPDLVPL-AVTTSAGNQTPDKTLNNALRILTLLNRS 59 Query: 60 DIXXXXXXXXXXXXXXXTGEQAHGESGMDGPALPASRFKPVEQGAVEFMLEIIRSSEEKI 119 DI + HGE+G+DGPALP F P AVE M + IR S + + Sbjct: 60 DIPVAGGAAKPLARDLIIADNVHGETGLDGPALPNPSFSPQAITAVELMAQQIRKSHQPV 119 Query: 120 TLVPTAPLTNIALLITAYPEVKEKIEKISLMGGGLAYGNVTTTAEFNIYVDPEAARIVFE 179 TL+PT PLTNIALL+ ++ E+ +KIE+I LMGG GN T AEFNI+VDPEAA IVF+ Sbjct: 120 TLIPTGPLTNIALLLASHSELHDKIERIVLMGGAAGVGNWTPAAEFNIFVDPEAADIVFK 179 Query: 180 SGIPIVMSGLDVTDKAAIFEEEILELKS-RGPVSVMVGELLDFYSIYGK--KMGYVGSAL 236 SGIPI M GLDVT +A I +E+I +++ PV+ V ELLDF+ IY + K G+VG+ L Sbjct: 180 SGIPITMCGLDVTHQAQIMDEDIERIRAIPNPVAKCVAELLDFFMIYHRDPKWGFVGAPL 239 Query: 237 HDPCAVAWLLRPELFESEHLHITVETEGRLTRGMTVADRRKKPDRPANTQVLLGVDREAF 296 HDPC +AWLL+PELF+++ + +ET+ LT GMTV DR + +PAN VL G++R+ F Sbjct: 240 HDPCTIAWLLKPELFDAQDCWVGIETQSELTLGMTVVDRYQLTGKPANATVLFGLNRQGF 299 Query: 297 MKLLFDAL 304 + LL +L Sbjct: 300 VDLLVHSL 307 >gb|EAJ34082.1| unknown [environmental sequence] Length = 311 Score = 281 bits (720), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 147/312 (47%), Positives = 189/312 (60%), Gaps = 5/312 (1%) Query: 1 MPTPIIIDCDPGHDDXXXXXXXXXHPEQLEIRGITTVGGNQILDKITDNALKVLSFVNAD 60 M P+I+DCDPGHDD PE L++ +TT GNQ DK +NAL++L+ + D Sbjct: 1 MALPVILDCDPGHDDAIALILALASPE-LKVLAVTTSAGNQTPDKTLNNALRILTLLGRD 59 Query: 61 -IXXXXXXXXXXXXXXXTGEQAHGESGMDGPALPASRFKPVEQGAVEFMLEIIRSSEEKI 119 I + HGESG+DGP LP F PV A+E M + +R S E + Sbjct: 60 DIPVAAGAPKPLARELIVADNVHGESGLDGPTLPDPAFAPVAMTALELMAKCLRESPEPV 119 Query: 120 TLVPTAPLTNIALLITAYPEVKEKIEKISLMGGGLAYGNVTTTAEFNIYVDPEAARIVFE 179 TLVPT PLTNIALL+ A+PE+K KI +I LMGG GN T AEFNIYVDP+AA +VF+ Sbjct: 120 TLVPTGPLTNIALLLAAHPELKSKIARIVLMGGAAGPGNWTPAAEFNIYVDPQAADMVFK 179 Query: 180 SGIPIVMSGLDVTDKAAIFEEEILELKS-RGPVSVMVGELLDFYSIYGK--KMGYVGSAL 236 SG+PI M GLDVT +A + +E+I +++ PV+ V LLDF+ IY + K G+ G+ L Sbjct: 180 SGLPITMCGLDVTHEAQVMDEDIERVRAITNPVAQCVAGLLDFFMIYHRDPKWGFAGAPL 239 Query: 237 HDPCAVAWLLRPELFESEHLHITVETEGRLTRGMTVADRRKKPDRPANTQVLLGVDREAF 296 HDPC +AWLL P LF + +ET G T GMTV DR +PAN VLLG+DR F Sbjct: 240 HDPCTIAWLLAPALFHGVECRVDIETGGTHTSGMTVVDRYGLTGKPANALVLLGLDRAGF 299 Query: 297 MKLLFDALDRLD 308 + LL L D Sbjct: 300 IDLLVTRLRAFD 311 >ref|NP_752665.1| Hypothetical protein ybeK [Escherichia coli CFT073] gb|AAN79208.1| Hypothetical protein ybeK [Escherichia coli CFT073] Length = 322 Score = 281 bits (718), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 146/308 (47%), Positives = 192/308 (62%), Gaps = 5/308 (1%) Query: 1 MPTPIIIDCDPGHDDXXXXXXXXXHPEQLEIRGITTVGGNQILDKITDNALKVLSFVN-A 59 M PI++DCDPGHDD PE L+++ IT+ GNQ +K N L++L+ +N Sbjct: 12 MALPILLDCDPGHDDAIAIVLALASPE-LDVKAITSSAGNQTPEKTLRNVLRMLTLLNRT 70 Query: 60 DIXXXXXXXXXXXXXXXTGEQAHGESGMDGPALPASRFKPVEQGAVEFMLEIIRSSEEKI 119 DI + HGESG+DGPALP F P AVE M + +R SEE + Sbjct: 71 DIPVASGAVKPLMRNLIIADNVHGESGLDGPALPEPTFAPQNCTAVELMAKTLRESEEPV 130 Query: 120 TLVPTAPLTNIALLITAYPEVKEKIEKISLMGGGLAYGNVTTTAEFNIYVDPEAARIVFE 179 T+V T P TN+ALL+ ++PE+ KI +I +MGG + GN T AEFNIYVDPEAA IVF+ Sbjct: 131 TIVSTGPQTNVALLLNSHPELHSKIARIVIMGGAMGLGNWTPAAEFNIYVDPEAAEIVFQ 190 Query: 180 SGIPIVMSGLDVTDKAAIFEEEILELKSRG-PVSVMVGELLDFYSIYGK--KMGYVGSAL 236 SGIP+VM+GLDVT KA I E+ ++ G PVS +V ELLDF+ Y K K G+VG+ L Sbjct: 191 SGIPVVMAGLDVTHKAQIHVEDTERFRAIGNPVSTIVAELLDFFLEYHKDEKWGFVGAPL 250 Query: 237 HDPCAVAWLLRPELFESEHLHITVETEGRLTRGMTVADRRKKPDRPANTQVLLGVDREAF 296 HDPC +AWLL+PELF + + VET+G+ T+GMTV D N V++ VDR+ F Sbjct: 251 HDPCTIAWLLKPELFTTVERWVGVETQGKYTQGMTVVDYYYLTGNKPNATVMVDVDRQGF 310 Query: 297 MKLLFDAL 304 + LL D L Sbjct: 311 VDLLADRL 318 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.318 0.138 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 432,860,694 Number of extensions: 16501919 Number of successful extensions: 38238 Number of sequences better than 1.0e-05: 274 Number of HSP's gapped: 37619 Number of HSP's successfully gapped: 274 Length of query: 318 Length of database: 757,237,578 Length adjustment: 125 Effective length of query: 193 Effective length of database: 417,850,203 Effective search space: 80645089179 Effective search space used: 80645089179 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 126 (53.1 bits)