BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0382.0005.p (332 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_244348.1| ABC transporter (ATP-binding protein) [Bacillus... 236 8e-61 ref|NP_901965.1| probable ABC transporter system, ATP-binding p... 230 4e-59 ref|NP_981418.1| ABC transporter, ATP-binding protein [Bacillus ... 221 2e-56 ref|NP_834658.1| ABC transporter ATP-binding protein [Bacillus c... 221 2e-56 ref|NP_274942.1| ABC transporter, ATP-binding protein [Neisseria... 221 2e-56 >ref|NP_244348.1| ABC transporter (ATP-binding protein) [Bacillus halodurans] pir||A84085 ABC transporter (ATP-binding protein) BH3481 [imported] - Bacillus halodurans (strain C-125) dbj|BAB07200.1| ABC transporter (ATP-binding protein) [Bacillus halodurans] Length = 338 Score = 236 bits (601), Expect = 8e-61, Method: Compositional matrix adjust. Identities = 118/236 (50%), Positives = 165/236 (69%), Gaps = 1/236 (0%) Query: 80 ILALSGVSKSFDLKEGRYCAVDKVSLEVRXXXXXXXXXXXXXXKSTLLRLINLLERPDAG 139 +++L G+ K F K G AVD V+L++ KSTL+R++N+LERP G Sbjct: 1 MISLDGIRKVFKAKRGSVTAVDGVNLKINEGEIFGVIGYSGAGKSTLIRMLNMLERPTEG 60 Query: 140 TVTLDGRLLTEMPEKLLRRERQKIGMIFQQFNLVGNATVSRNVAIPLELAGAPRSGRMER 199 +V + G+ L+++ ++ LR ERQKIGMIFQ FNL+ + TV +N+A PLE+AG P+ R +R Sbjct: 61 SVIVAGKDLSKLSDRDLRIERQKIGMIFQHFNLLWSRTVRKNIAFPLEIAGVPKKEREKR 120 Query: 200 VRECLHFVGLESKADQYPAQLSGGQRQRVAIARALANSPKLLLCDEPTSALDPGTTADIL 259 V E ++ VGLE + + YP+QLSGGQ+QRV IARALAN+PK+LLCDE TSALDP TT IL Sbjct: 121 VDELINLVGLEGREEAYPSQLSGGQKQRVGIARALANNPKVLLCDEATSALDPKTTDSIL 180 Query: 260 DVLQHIKDMLGVTVVIVTHELDVVRKICTDVSVMEGGRIVDSFSRRDGGFLAPEGH 315 D+L I + LG+T+V++THE+ V+RKIC V+VME G++V+ D F P+ H Sbjct: 181 DLLVDINEKLGLTIVLITHEMHVIRKICHRVAVMEAGKVVEEGPVLD-VFRKPKEH 235 >ref|NP_901965.1| probable ABC transporter system, ATP-binding protein [Chromobacterium violaceum ATCC 12472] gb|AAQ59967.1| probable ABC transporter system, ATP-binding protein [Chromobacterium violaceum ATCC 12472] Length = 245 Score = 230 bits (586), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 124/228 (54%), Positives = 152/228 (66%), Gaps = 1/228 (0%) Query: 80 ILALSGVSKSFDLKEGRYC-AVDKVSLEVRXXXXXXXXXXXXXXKSTLLRLINLLERPDA 138 ++ L V K F EG + AV + SL ++ KSTLLRLINLLERPDA Sbjct: 1 MIHLQNVRKRFRRPEGGWFDAVAETSLTIKAGEVFGLIGFSGAGKSTLLRLINLLERPDA 60 Query: 139 GTVTLDGRLLTEMPEKLLRRERQKIGMIFQQFNLVGNATVSRNVAIPLELAGAPRSGRME 198 G V +DG+ LT + K LR RQ IGM+FQQFNL+ N TV+ NVA PLE+AG ++ + Sbjct: 61 GAVIVDGQDLTNLSPKQLRAARQNIGMVFQQFNLLANRTVAGNVAFPLEIAGWSKADIEK 120 Query: 199 RVRECLHFVGLESKADQYPAQLSGGQRQRVAIARALANSPKLLLCDEPTSALDPGTTADI 258 RV ECL VGLE +A+ YPAQLSGGQ+QRV IARALA P ++L DEPTSALDP TT I Sbjct: 121 RVAECLAVVGLEDRANHYPAQLSGGQKQRVGIARALAPRPHVILADEPTSALDPKTTQSI 180 Query: 259 LDVLQHIKDMLGVTVVIVTHELDVVRKICTDVSVMEGGRIVDSFSRRD 306 LD LQ I GVTVVIVTHE++VVR IC +V++ GR+V+ D Sbjct: 181 LDCLQDINARFGVTVVIVTHEMNVVRSICHRAAVLDQGRVVEVVDVND 228 >ref|NP_981418.1| ABC transporter, ATP-binding protein [Bacillus cereus ATCC 10987] gb|AAS44026.1| ABC transporter, ATP-binding protein [Bacillus cereus ATCC 10987] Length = 341 Score = 221 bits (563), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 108/222 (48%), Positives = 151/222 (68%) Query: 80 ILALSGVSKSFDLKEGRYCAVDKVSLEVRXXXXXXXXXXXXXXKSTLLRLINLLERPDAG 139 ++ L V K + K G AVD +L++ KS+L+RL N LE+P +G Sbjct: 1 MILLENVKKIYKAKSGDVTAVDNANLKIEKGEIFGVIGYSGAGKSSLIRLFNQLEKPTSG 60 Query: 140 TVTLDGRLLTEMPEKLLRRERQKIGMIFQQFNLVGNATVSRNVAIPLELAGAPRSGRMER 199 +T+ R+++ + LR+ RQ+IGMIFQ FNL+ + TV N+ PLE+AG ++ R +R Sbjct: 61 QITIANRVISAITGSELRKARQEIGMIFQHFNLLWSRTVRENIEFPLEIAGVDKAKRRKR 120 Query: 200 VRECLHFVGLESKADQYPAQLSGGQRQRVAIARALANSPKLLLCDEPTSALDPGTTADIL 259 V E +H VGLE + D YP+QLSGGQ+QRV IARALAN+P++LLCDE TSALDP TT IL Sbjct: 121 VDELIHLVGLEGRGDAYPSQLSGGQKQRVGIARALANNPQVLLCDEATSALDPETTDQIL 180 Query: 260 DVLQHIKDMLGVTVVIVTHELDVVRKICTDVSVMEGGRIVDS 301 D+L I LG+T+V++THE+ V+RKIC V+VME G+IV++ Sbjct: 181 DLLLDINKRLGLTIVLITHEMHVIRKICNRVAVMEKGKIVET 222 >ref|NP_834658.1| ABC transporter ATP-binding protein [Bacillus cereus ATCC 14579] gb|AAP11859.1| ABC transporter ATP-binding protein [Bacillus cereus ATCC 14579] Length = 341 Score = 221 bits (563), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 108/222 (48%), Positives = 151/222 (68%) Query: 80 ILALSGVSKSFDLKEGRYCAVDKVSLEVRXXXXXXXXXXXXXXKSTLLRLINLLERPDAG 139 ++ L V K + K G AVD +L++ KS+L+RL N LE+P +G Sbjct: 1 MILLENVKKIYKAKSGDVTAVDNANLKIEKGEIFGVIGYSGAGKSSLIRLFNQLEKPTSG 60 Query: 140 TVTLDGRLLTEMPEKLLRRERQKIGMIFQQFNLVGNATVSRNVAIPLELAGAPRSGRMER 199 +T+ R+++ + LR+ RQ+IGMIFQ FNL+ + TV N+ PLE+AG ++ R +R Sbjct: 61 QITIANRVISAITGSELRKARQEIGMIFQHFNLLWSRTVRENIEFPLEIAGVDKAKRRKR 120 Query: 200 VRECLHFVGLESKADQYPAQLSGGQRQRVAIARALANSPKLLLCDEPTSALDPGTTADIL 259 V E +H VGLE + D YP+QLSGGQ+QRV IARALAN+P++LLCDE TSALDP TT IL Sbjct: 121 VDELIHLVGLEGRGDAYPSQLSGGQKQRVGIARALANNPQVLLCDEATSALDPETTDQIL 180 Query: 260 DVLQHIKDMLGVTVVIVTHELDVVRKICTDVSVMEGGRIVDS 301 D+L I LG+T+V++THE+ V+RKIC V+VME G+IV++ Sbjct: 181 DLLLDINKRLGLTIVLITHEMHVIRKICNRVAVMEKGKIVET 222 >ref|NP_274942.1| ABC transporter, ATP-binding protein [Neisseria meningitidis MC58] pir||E81023 ABC transporter, ATP-binding protein NMB1948 [imported] - Neisseria meningitidis (strain MC58 serogroup B) gb|AAF42277.1| ABC transporter, ATP-binding protein [Neisseria meningitidis MC58] Length = 245 Score = 221 bits (563), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 112/222 (50%), Positives = 150/222 (67%), Gaps = 1/222 (0%) Query: 80 ILALSGVSKSFDLKEG-RYCAVDKVSLEVRXXXXXXXXXXXXXXKSTLLRLINLLERPDA 138 ++ L VSK + ++ R+ AV+ SLE+R KSTLLRLINLLERPD+ Sbjct: 1 MIILDKVSKHYQTRDKTRFAAVEPTSLEIRDGEIFGLMGYSGAGKSTLLRLINLLERPDS 60 Query: 139 GTVTLDGRLLTEMPEKLLRRERQKIGMIFQQFNLVGNATVSRNVAIPLELAGAPRSGRME 198 G V + G+ LT + LR+ RQ IGM+FQQFNL+ N TV+ NVA PLE+AG P Sbjct: 61 GKVNVCGQELTALDAAALRQARQNIGMVFQQFNLLSNRTVADNVAFPLEIAGWPSEKIKA 120 Query: 199 RVRECLHFVGLESKADQYPAQLSGGQRQRVAIARALANSPKLLLCDEPTSALDPGTTADI 258 RV+ECL VGL +A YPAQLSGGQ+QRV IARALA P+++L DEPTSALDP TT + Sbjct: 121 RVKECLEIVGLTERAGHYPAQLSGGQKQRVGIARALAPKPQVILADEPTSALDPATTRSV 180 Query: 259 LDVLQHIKDMLGVTVVIVTHELDVVRKICTDVSVMEGGRIVD 300 L+ L+ I VT+VIVTHE+ V+R++C ++++ G++V+ Sbjct: 181 LECLEDINKRFNVTIVIVTHEMSVIRRLCDRAALLDKGKVVE 222 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.322 0.138 0.403 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 431,967,055 Number of extensions: 15966910 Number of successful extensions: 84650 Number of sequences better than 1.0e-05: 19396 Number of HSP's gapped: 69525 Number of HSP's successfully gapped: 20540 Length of query: 332 Length of database: 757,237,578 Length adjustment: 126 Effective length of query: 206 Effective length of database: 415,135,104 Effective search space: 85517831424 Effective search space used: 85517831424 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 126 (53.1 bits)