BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0382.0004.p (220 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_00183651.1| hypothetical protein Exigu097701 [Exiguobacte... 213 2e-54 ref|NP_901966.1| probable transmembrane ABC transporter protein ... 153 2e-36 ref|NP_700128.1| ABC transporter, permease protein [Brucella sui... 141 9e-33 ref|NP_541314.1| ABC TRANSPORTER PERMEASE PROTEIN [Brucella meli... 141 1e-32 ref|NP_274941.1| ABC transporter, permease protein [Neisseria me... 135 9e-31 >ref|ZP_00183651.1| hypothetical protein Exigu097701 [Exiguobacterium sp. 255-15] Length = 220 Score = 213 bits (542), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 113/220 (51%), Positives = 139/220 (63%) Query: 1 MFENLLKYQDQMWQSIGETFVMVGISXXXXXXXXXXXXXXXYFCRKGQLYENKTXXXXXX 60 M + +L+Y ++ +IG+TFVMVGIS Y RKGQL N+ Sbjct: 1 MPDIVLEYAAEIRLAIGQTFVMVGISILAALLLGLPLGTWLYLSRKGQLLSNQFVFSILN 60 Query: 61 XXXXXXRSFPFLLLVVALIPFTRILVGTAIGTMAAAVPLSIVAIAYYSRLVEQSLLEVPK 120 RSFPFLLLVV LIPFTR+++GTAIGT AA VPL+++AIA+YSRLVEQSLLEVPK Sbjct: 61 LFVNTIRSFPFLLLVVFLIPFTRLIIGTAIGTAAATVPLAVIAIAHYSRLVEQSLLEVPK 120 Query: 121 GTIEAALSMGASKAGLIFKFLYVEARSGLVLGLTAXXXXXXXXXXVMXXXXXXXXXDFAI 180 G IEAA+SMGAS ++ KFL+VEARSGLVLGLT +M DFA+ Sbjct: 121 GVIEAAVSMGASTREVVLKFLFVEARSGLVLGLTTSIVSFISYSTIMGVVGGGGIGDFAV 180 Query: 181 RYGYQRFETEVMVYAXXXXXXXXXXXXFAGSTLARLLDKR 220 RYGYQ+F+TE+M+Y F G+T ARLLDKR Sbjct: 181 RYGYQQFQTELMLYMILIMVILVQLIQFTGTTAARLLDKR 220 >ref|NP_901966.1| probable transmembrane ABC transporter protein [Chromobacterium violaceum ATCC 12472] gb|AAQ59968.1| probable transmembrane ABC transporter protein [Chromobacterium violaceum ATCC 12472] Length = 228 Score = 153 bits (387), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 90/219 (41%), Positives = 118/219 (53%) Query: 2 FENLLKYQDQMWQSIGETFVMVGISXXXXXXXXXXXXXXXYFCRKGQLYENKTXXXXXXX 61 +NL ++WQ+I ET VM+G+ Y + GQ++ N+ Sbjct: 10 LQNLQSMGPEIWQAILETGVMLGVGLGAAILFGGPLGVILYLSQPGQMFANRAVNGVLSW 69 Query: 62 XXXXXRSFPFLLLVVALIPFTRILVGTAIGTMAAAVPLSIVAIAYYSRLVEQSLLEVPKG 121 RSFPF++L+V LIP TR LVG+ IG +AA+VPLS AI Y++RLVEQ+L E+P+G Sbjct: 70 VVNLVRSFPFIILMVVLIPLTRALVGSTIGPVAASVPLSFAAIPYFARLVEQTLREIPRG 129 Query: 122 TIEAALSMGASKAGLIFKFLYVEARSGLVLGLTAXXXXXXXXXXVMXXXXXXXXXDFAIR 181 +EAA +MGAS A +IFK L EARSGL+ LT V D AIR Sbjct: 130 VVEAAEAMGASPAQIIFKVLVNEARSGLISSLTILTISFLSYTAVAGVVGGGGIGDLAIR 189 Query: 182 YGYQRFETEVMVYAXXXXXXXXXXXXFAGSTLARLLDKR 220 YGY RF+T+VMV G+ LA LDKR Sbjct: 190 YGYYRFQTDVMVAMVLLLVVLVQIIQLLGNRLAAKLDKR 228 >ref|NP_700128.1| ABC transporter, permease protein [Brucella suis 1330] gb|AAN34133.1| ABC transporter, permease protein [Brucella suis 1330] Length = 221 Score = 141 bits (356), Expect = 9e-33, Method: Compositional matrix adjust. Identities = 81/211 (38%), Positives = 105/211 (49%) Query: 10 DQMWQSIGETFVMVGISXXXXXXXXXXXXXXXYFCRKGQLYENKTXXXXXXXXXXXXRSF 69 D +W+S ET +M G S +G L +N T RS Sbjct: 7 DLLWRSFWETIIMTGFSSLISLVVGLPLALIMILTERGGLAQNLTLNTILGAIINGFRSV 66 Query: 70 PFLLLVVALIPFTRILVGTAIGTMAAAVPLSIVAIAYYSRLVEQSLLEVPKGTIEAALSM 129 PF++L+VALIP TR +VGT+IGT A+ VPLSI AI YY+R+ E SL EV G IEAA SM Sbjct: 67 PFIILLVALIPVTRFIVGTSIGTWASIVPLSIAAIPYYARIAEVSLREVDHGLIEAARSM 126 Query: 130 GASKAGLIFKFLYVEARSGLVLGLTAXXXXXXXXXXVMXXXXXXXXXDFAIRYGYQRFET 189 GA++ ++ + L EA G++ G T + D AIRYGYQRFET Sbjct: 127 GANRWTIVREVLIPEALPGIIAGFTVTVITLIGASAMAGAIGAGGLGDLAIRYGYQRFET 186 Query: 190 EVMVYAXXXXXXXXXXXXFAGSTLARLLDKR 220 +VM+ + G L LDKR Sbjct: 187 QVMIAVVIILIIMVCGIQWVGDRLVNRLDKR 217 >ref|NP_541314.1| ABC TRANSPORTER PERMEASE PROTEIN [Brucella melitensis] pir||AG3551 ABC transporter permease protein BMEII0336 [imported] - Brucella melitensis (strain 16M) gb|AAL53578.1| ABC TRANSPORTER PERMEASE PROTEIN [Brucella melitensis 16M] Length = 230 Score = 141 bits (355), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 81/211 (38%), Positives = 105/211 (49%) Query: 10 DQMWQSIGETFVMVGISXXXXXXXXXXXXXXXYFCRKGQLYENKTXXXXXXXXXXXXRSF 69 D +W+S ET +M G S +G L +N T RS Sbjct: 16 DLLWRSFWETIIMAGFSSLISLVVGLPLALIMILTERGGLAQNLTLNTILGAIINGFRSV 75 Query: 70 PFLLLVVALIPFTRILVGTAIGTMAAAVPLSIVAIAYYSRLVEQSLLEVPKGTIEAALSM 129 PF++L+VALIP TR +VGT+IGT A+ VPLSI AI YY+R+ E SL EV G IEAA SM Sbjct: 76 PFIILLVALIPVTRFIVGTSIGTWASIVPLSIAAIPYYARIAEVSLREVDHGLIEAARSM 135 Query: 130 GASKAGLIFKFLYVEARSGLVLGLTAXXXXXXXXXXVMXXXXXXXXXDFAIRYGYQRFET 189 GA++ ++ + L EA G++ G T + D AIRYGYQRFET Sbjct: 136 GANRWTIVREVLIPEALPGIIAGFTVTVITLIGASAMAGAIGAGGLGDLAIRYGYQRFET 195 Query: 190 EVMVYAXXXXXXXXXXXXFAGSTLARLLDKR 220 +VM+ + G L LDKR Sbjct: 196 QVMIAVVIILIIMVCGIQWVGDRLVNRLDKR 226 >ref|NP_274941.1| ABC transporter, permease protein [Neisseria meningitidis MC58] pir||D81023 ABC transporter, permease protein NMB1947 [imported] - Neisseria meningitidis (strain MC58 serogroup B) gb|AAF42276.1| ABC transporter, permease protein [Neisseria meningitidis MC58] Length = 228 Score = 135 bits (339), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 78/212 (36%), Positives = 116/212 (54%) Query: 9 QDQMWQSIGETFVMVGISXXXXXXXXXXXXXXXYFCRKGQLYENKTXXXXXXXXXXXXRS 68 +D++++++GETFVMVG+S + QL+ NK R+ Sbjct: 17 KDEIFRALGETFVMVGLSTTFAVIFGTLLGVLLFVTSSRQLHYNKLVNFLLDNLVNLMRA 76 Query: 69 FPFLLLVVALIPFTRILVGTAIGTMAAAVPLSIVAIAYYSRLVEQSLLEVPKGTIEAALS 128 FPF++L++A+IP TR +VG+ IG +AA++ LS+ + Y++RLVEQ+L EVPKG IEAA + Sbjct: 77 FPFVILMIAMIPATRAIVGSTIGPVAASLVLSVSGLFYFARLVEQNLREVPKGVIEAAAA 136 Query: 129 MGASKAGLIFKFLYVEARSGLVLGLTAXXXXXXXXXXVMXXXXXXXXXDFAIRYGYQRFE 188 MGA ++ K L EAR+G+V +T D AIRYGY R++ Sbjct: 137 MGAPPIAIVCKVLLNEARAGMVSSITVLAIGLLSYSAAAGMIGGGGLGDLAIRYGYYRYQ 196 Query: 189 TEVMVYAXXXXXXXXXXXXFAGSTLARLLDKR 220 TEV+++ G+ LAR LDKR Sbjct: 197 TEVIIFIVALLVLLVILIQSTGNALARKLDKR 228 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.328 0.140 0.397 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 193,878,985 Number of extensions: 4896091 Number of successful extensions: 19597 Number of sequences better than 1.0e-05: 155 Number of HSP's gapped: 19457 Number of HSP's successfully gapped: 155 Length of query: 220 Length of database: 757,237,578 Length adjustment: 121 Effective length of query: 99 Effective length of database: 428,710,599 Effective search space: 42442349301 Effective search space used: 42442349301 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 123 (52.0 bits)