BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0381.0002.p (202 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_388623.1| similar to ABC transporter (ATP-binding protein... 276 3e-73 ref|NP_781267.1| ABC transporter ATP-binding protein [Clostridiu... 261 5e-69 ref|NP_349931.1| ATPase component of ABC transporter (two ATPase... 252 3e-66 ref|NP_561053.1| probable ABC transporter [Clostridium perfringe... 250 1e-65 ref|NP_266256.1| ABC transporter ATP binding protein [Lactococcu... 244 9e-64 >ref|NP_388623.1| similar to ABC transporter (ATP-binding protein) [Bacillus subtilis] pir||D69813 ABC transporter (ATP-binding protein) homolog yfmM - Bacillus subtilis dbj|BAA22327.1| YfmM [Bacillus subtilis] emb|CAB12571.1| yfmM [Bacillus subtilis subsp. subtilis str. 168] Length = 518 Score = 276 bits (705), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 126/168 (75%), Positives = 152/168 (90%) Query: 1 MSILNVERLSHGFGDRAIFSDVSFRLLKGEHIGLIGANGEGKSTFMNIITGKLQPDEGKV 60 MSIL+V+ LSHGFGDRAIF++VSFRLLKGEH+GLIGANGEGKSTFMNIITGKL+PDEGKV Sbjct: 1 MSILSVKDLSHGFGDRAIFNNVSFRLLKGEHVGLIGANGEGKSTFMNIITGKLEPDEGKV 60 Query: 61 EWAKRMRAGYLDQHAVLTKGQSIRDVLRGAFQYLFDMEQEMNDMYGRMGDVSPEELEQML 120 EW+K +R GYLDQH VL KG+SIRDVL+ AF YLF ME+EMN++Y +MG+ P+ELE++L Sbjct: 61 EWSKNVRVGYLDQHTVLEKGKSIRDVLKDAFHYLFAMEEEMNEIYNKMGEADPDELEKLL 120 Query: 121 EDVGTIQDTLTNQDFYMIDAKIDETARGLGLTDIGLDKDVHDLSGGQR 168 E+VG IQD LTN DFY+ID+K++E ARGLGL+DIGL++DV DLSGGQR Sbjct: 121 EEVGVIQDALTNNDFYVIDSKVEEIARGLGLSDIGLERDVTDLSGGQR 168 >ref|NP_781267.1| ABC transporter ATP-binding protein [Clostridium tetani E88] gb|AAO35204.1| ABC transporter ATP-binding protein [Clostridium tetani E88] Length = 518 Score = 261 bits (668), Expect = 5e-69, Method: Compositional matrix adjust. Identities = 121/168 (72%), Positives = 146/168 (86%) Query: 1 MSILNVERLSHGFGDRAIFSDVSFRLLKGEHIGLIGANGEGKSTFMNIITGKLQPDEGKV 60 MSIL+VE L+HGFGDRAIF+DVSF LLKGEHIGL+GANGEGKS+FMNIITG L+PDEG + Sbjct: 1 MSILSVENLTHGFGDRAIFNDVSFNLLKGEHIGLVGANGEGKSSFMNIITGNLEPDEGVI 60 Query: 61 EWAKRMRAGYLDQHAVLTKGQSIRDVLRGAFQYLFDMEQEMNDMYGRMGDVSPEELEQML 120 EW+KR+R GYLDQH VL G +IR+ L+ AF+YLFD+E+EMN++ +MG + +ELE +L Sbjct: 61 EWSKRVRVGYLDQHTVLKSGTTIREFLKTAFKYLFDLEKEMNEICDKMGTANSDELELLL 120 Query: 121 EDVGTIQDTLTNQDFYMIDAKIDETARGLGLTDIGLDKDVHDLSGGQR 168 ED+GTIQD LTN DFY+IDAKIDE ARG+G+ DIGLDKDV DLSGGQR Sbjct: 121 EDMGTIQDILTNNDFYIIDAKIDEVARGMGIADIGLDKDVQDLSGGQR 168 >ref|NP_349931.1| ATPase component of ABC transporter (two ATPase domains) [Clostridium acetobutylicum] pir||D97310 ATPase component of ABC transporter (two ATPase domains) CAC3339 [imported] - Clostridium acetobutylicum gb|AAK81271.1| ATPase component of ABC transporter (two ATPase domains) [Clostridium acetobutylicum] Length = 518 Score = 252 bits (644), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 115/168 (68%), Positives = 145/168 (86%) Query: 1 MSILNVERLSHGFGDRAIFSDVSFRLLKGEHIGLIGANGEGKSTFMNIITGKLQPDEGKV 60 MSILNV+ ++HGFGDRAIF DVSFRLLKGEH+GL+GANGEGKSTFM+IITGKL PDEG + Sbjct: 1 MSILNVKNVNHGFGDRAIFEDVSFRLLKGEHVGLVGANGEGKSTFMSIITGKLMPDEGTI 60 Query: 61 EWAKRMRAGYLDQHAVLTKGQSIRDVLRGAFQYLFDMEQEMNDMYGRMGDVSPEELEQML 120 EW+ +R GY+DQHA L KG++I+DVL+ AF+YLFDME M ++ +M + S +EL+++L Sbjct: 61 EWSNNVRVGYMDQHASLQKGKTIKDVLKDAFKYLFDMEANMMEITDKMAEASEDELQKLL 120 Query: 121 EDVGTIQDTLTNQDFYMIDAKIDETARGLGLTDIGLDKDVHDLSGGQR 168 +++GTIQDTL N DFY+ID KI+E A+GLG+TDIGLDKDV DLSGGQR Sbjct: 121 DEMGTIQDTLDNNDFYVIDVKIEEVAKGLGITDIGLDKDVADLSGGQR 168 >ref|NP_561053.1| probable ABC transporter [Clostridium perfringens] dbj|BAB79843.1| probable ABC transporter [Clostridium perfringens str. 13] Length = 518 Score = 250 bits (639), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 119/168 (70%), Positives = 141/168 (83%) Query: 1 MSILNVERLSHGFGDRAIFSDVSFRLLKGEHIGLIGANGEGKSTFMNIITGKLQPDEGKV 60 MSIL V+ ++HGFGDRAIF DVSFRLLKGEH+GLIGANGEGKSTFMNIITGKL PDEG V Sbjct: 1 MSILIVKNMNHGFGDRAIFEDVSFRLLKGEHVGLIGANGEGKSTFMNIITGKLMPDEGDV 60 Query: 61 EWAKRMRAGYLDQHAVLTKGQSIRDVLRGAFQYLFDMEQEMNDMYGRMGDVSPEELEQML 120 +W+ ++R GY+DQHA L KG++IR+VLR AFQYLFDME EMN +Y RMG++S +E+ + L Sbjct: 61 QWSNKVRVGYMDQHAQLEKGKTIREVLREAFQYLFDMEVEMNGLYERMGEMSEDEMTKAL 120 Query: 121 EDVGTIQDTLTNQDFYMIDAKIDETARGLGLTDIGLDKDVHDLSGGQR 168 E TIQD L + FYMIDAK++E A GLGL D+GLDKDV DLSGGQR Sbjct: 121 ERTATIQDMLDHNGFYMIDAKVEEVAAGLGLRDVGLDKDVTDLSGGQR 168 >ref|NP_266256.1| ABC transporter ATP binding protein [Lactococcus lactis subsp. lactis] pir||D86637 ABC transporter ATP binding protein ybaB [imported] - Lactococcus lactis subsp. lactis (strain IL1403) gb|AAK04198.1| ABC transporter ATP binding protein [Lactococcus lactis subsp. lactis] Length = 517 Score = 244 bits (623), Expect = 9e-64, Method: Compositional matrix adjust. Identities = 116/168 (69%), Positives = 140/168 (83%), Gaps = 1/168 (0%) Query: 1 MSILNVERLSHGFGDRAIFSDVSFRLLKGEHIGLIGANGEGKSTFMNIITGKLQPDEGKV 60 MSILNV+ LSHGFGDRAIF DVSFRLLKGEHIG +GANGEGKSTFMNIITG L PDEGKV Sbjct: 1 MSILNVKNLSHGFGDRAIFEDVSFRLLKGEHIGFVGANGEGKSTFMNIITGTLVPDEGKV 60 Query: 61 EWAKRMRAGYLDQHAVLTKGQSIRDVLRGAFQYLFDMEQEMNDMYGRMGDVSPEELEQML 120 W+K+ R GY+DQHAVL KG++ R+ L AFQYLFD+E ++ND Y +M ++S +E+ L Sbjct: 61 IWSKKHRVGYMDQHAVLGKGKTTREALAEAFQYLFDIEAQINDTYMKMAEMSEDEMNAAL 120 Query: 121 EDVGTIQDTLTNQDFYMIDAKIDETARGLGLTDIGLDKDVHDLSGGQR 168 E+VG +Q+ L N DFY+IDAK++ETARGLGLT + LDKDV +LSGGQR Sbjct: 121 ENVGELQEELDNSDFYLIDAKVEETARGLGLTPL-LDKDVAELSGGQR 167 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.321 0.138 0.418 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 294,309,130 Number of extensions: 12086862 Number of successful extensions: 65113 Number of sequences better than 1.0e-05: 1595 Number of HSP's gapped: 65216 Number of HSP's successfully gapped: 1889 Length of query: 202 Length of database: 757,237,578 Length adjustment: 120 Effective length of query: 82 Effective length of database: 431,425,698 Effective search space: 35376907236 Effective search space used: 35376907236 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 123 (52.0 bits)