BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0378.0005.p (107 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_244036.1| BH3170~unknown [Bacillus halodurans] >gi|253704... 92 3e-18 ref|NP_658633.1| hypothetical protein predicted by GeneMark [Bac... 82 3e-15 ref|NP_981029.1| conserved hypothetical protein [Bacillus cereus... 82 4e-15 ref|NP_834312.1| hypothetical Membrane Spanning Protein [Bacillu... 82 4e-15 ref|ZP_00062100.1| hypothetical protein [Clostridium thermocellu... 74 2e-12 >ref|NP_244036.1| BH3170~unknown [Bacillus halodurans] pir||B84046 hypothetical protein BH3170 [imported] - Bacillus halodurans (strain C-125) dbj|BAB06889.1| BH3170~unknown [Bacillus halodurans] Length = 111 Score = 92.4 bits (228), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 42/103 (40%), Positives = 67/103 (65%) Query: 4 FLSKAVLDFFIACGIVLGGAMLGGIGAVVSLQPPTQTMLDVADRIKIWALAAAVGGTIDP 63 FL+ V+DFF+A G+++GG ++GG+GA + +PP Q M D+A +KIWA+ AA+GG+ D Sbjct: 5 FLATLVIDFFVAFGVLIGGTLIGGMGAYLIGKPPLQVMHDLAGSLKIWAIVAAIGGSFDA 64 Query: 64 MRVIESNMLGGNLSPAIKQILYLVFAFLGAHMGSELVKWVCGK 106 + +E + G K + + FA GAH G+ LV+W+ G+ Sbjct: 65 ITSLERGLFTGAHDDIFKTLFMVFFALCGAHSGTLLVQWIVGE 107 >ref|NP_658633.1| hypothetical protein predicted by GeneMark [Bacillus anthracis A2012] ref|NP_847053.1| conserved hypothetical protein [Bacillus anthracis str. Ames] gb|AAP28539.1| conserved hypothetical protein [Bacillus anthracis str. Ames] Length = 112 Score = 82.4 bits (202), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 38/103 (36%), Positives = 61/103 (59%) Query: 2 NVFLSKAVLDFFIACGIVLGGAMLGGIGAVVSLQPPTQTMLDVADRIKIWALAAAVGGTI 61 + F S ++ +FIA G++LGG+++GG GA + +P + A ++IWAL AA+GGT Sbjct: 6 HTFFSLLIISYFIAFGVILGGSLIGGFGAFLIGKPTLTYINQFAQNLRIWALVAAIGGTF 65 Query: 62 DPMRVIESNMLGGNLSPAIKQILYLVFAFLGAHMGSELVKWVC 104 D E + GG++ +KQIL + FA G G ++KW+ Sbjct: 66 DTFYSFERSFFGGDMKDIVKQILLIFFATGGMQTGLIIIKWLT 108 >ref|NP_981029.1| conserved hypothetical protein [Bacillus cereus ATCC 10987] gb|AAS43637.1| conserved hypothetical protein [Bacillus cereus ATCC 10987] Length = 112 Score = 82.0 bits (201), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 38/103 (36%), Positives = 61/103 (59%) Query: 2 NVFLSKAVLDFFIACGIVLGGAMLGGIGAVVSLQPPTQTMLDVADRIKIWALAAAVGGTI 61 + F S ++ +FIA G++LGG+++GG GA + +P + A ++IWAL AA+GGT Sbjct: 6 HTFFSLLIISYFIAFGVILGGSLIGGFGAFLIGKPTLTYINQFAQNLRIWALVAAIGGTF 65 Query: 62 DPMRVIESNMLGGNLSPAIKQILYLVFAFLGAHMGSELVKWVC 104 D E + GG++ +KQIL + FA G G ++KW+ Sbjct: 66 DTFYSFERSFFGGDMKDIVKQILLIFFATGGMQTGLIIIKWLT 108 >ref|NP_834312.1| hypothetical Membrane Spanning Protein [Bacillus cereus ATCC 14579] gb|AAP11513.1| hypothetical Membrane Spanning Protein [Bacillus cereus ATCC 14579] Length = 114 Score = 82.0 bits (201), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 38/103 (36%), Positives = 61/103 (59%) Query: 2 NVFLSKAVLDFFIACGIVLGGAMLGGIGAVVSLQPPTQTMLDVADRIKIWALAAAVGGTI 61 + F S ++ +FIA G++LGG+++GG GA + +P + A ++IWAL AA+GGT Sbjct: 8 HTFFSLLIISYFIAFGVILGGSLIGGFGAFLIGKPALTYINQFAQNLRIWALVAAIGGTF 67 Query: 62 DPMRVIESNMLGGNLSPAIKQILYLVFAFLGAHMGSELVKWVC 104 D E + GG++ +KQIL + FA G G ++KW+ Sbjct: 68 DTFYSFERSFFGGDMKDIVKQILLIFFATGGMQTGLIIIKWLT 110 >ref|ZP_00062100.1| hypothetical protein [Clostridium thermocellum ATCC 27405] Length = 95 Score = 73.6 bits (179), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 32/91 (35%), Positives = 58/91 (63%), Gaps = 2/91 (2%) Query: 18 IVLGGAMLGGIGAVVSLQPPTQTMLDVADRIKIWALAAAVGGTIDPMRVIESNMLGGNLS 77 +++G ++ G+GA+++ PP +TM +A IKIWA+A A+GGT ++E + G + Sbjct: 1 MIVGASLFAGLGALINDHPPLKTMFQIASSIKIWAVAVALGGTFSTFEILEKGIFKGEIR 60 Query: 78 PAIKQILYLVFAFLGAHMGSELVKWV--CGK 106 IKQ +Y+V A +GA++G ++ + CG+ Sbjct: 61 SIIKQAVYVVVAVIGANVGYGFIRLIQKCGE 91 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.326 0.142 0.435 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 155,980,204 Number of extensions: 5558918 Number of successful extensions: 25888 Number of sequences better than 1.0e-05: 7 Number of HSP's gapped: 25888 Number of HSP's successfully gapped: 7 Length of query: 107 Length of database: 757,237,578 Length adjustment: 73 Effective length of query: 34 Effective length of database: 559,035,351 Effective search space: 19007201934 Effective search space used: 19007201934 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 120 (50.8 bits)