BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0377.0014.p (141 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_691285.1| sulfate permease [Oceanobacillus iheyensis HTE8... 161 6e-39 dbj|BAA12258.1| YbaR [Bacillus subtilis] 153 1e-36 ref|NP_388039.1| similar to hypothetical proteins [Bacillus subt... 153 1e-36 ref|NP_241280.1| sulfate permease [Bacillus halodurans] >gi|2529... 150 9e-36 ref|ZP_00182063.1| hypothetical protein Exigu264801 [Exiguobacte... 145 3e-34 >ref|NP_691285.1| sulfate permease [Oceanobacillus iheyensis HTE831] dbj|BAC12320.1| sulfate permease [Oceanobacillus iheyensis HTE831] Length = 483 Score = 161 bits (407), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 79/141 (56%), Positives = 101/141 (71%) Query: 1 VLAGILQILMGMLKRGRFITFLPQPVMTGFVNALAILIFMAQLTHFSGKGWVMYALVVLT 60 +L G+LQIL G+ K RF+ F+P+ VMTGFVNALAILIF +QL HF G+ W+MYALV LT Sbjct: 94 ILTGVLQILFGIFKLARFMKFVPRTVMTGFVNALAILIFTSQLQHFVGETWMMYALVALT 153 Query: 61 LLIIYSVPRFTKAVPSAXXXXXXXXXXXXXXHLDVRTVGDMGDITPALPVFHLPQLPFTL 120 L IIY PR TKAVPS ++ VR VGDMG++T LP+F LP +P L Sbjct: 154 LAIIYIFPRITKAVPSTLVAIIVVTIMVLTMNIGVRNVGDMGELTQTLPMFALPNIPLNL 213 Query: 121 DTLLIIAPYSLSLAVVGLLES 141 +TL+II PY+L+L++VG+LES Sbjct: 214 ETLMIIFPYALALSIVGILES 234 >dbj|BAA12258.1| YbaR [Bacillus subtilis] Length = 434 Score = 153 bits (387), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 76/141 (53%), Positives = 99/141 (70%) Query: 1 VLAGILQILMGMLKRGRFITFLPQPVMTGFVNALAILIFMAQLTHFSGKGWVMYALVVLT 60 +L GI+Q+++G+ K R + F+P+ VM GFVNALAILIF AQL F G W MYA++ + Sbjct: 52 ILTGIIQVILGISKIARLMKFIPRSVMIGFVNALAILIFSAQLPQFEGASWSMYAMLAGS 111 Query: 61 LLIIYSVPRFTKAVPSAXXXXXXXXXXXXXXHLDVRTVGDMGDITPALPVFHLPQLPFTL 120 L+IIY +PRFT AVPS H+DVRTVGDMG+I+ +LP F +P +PFT Sbjct: 112 LVIIYVLPRFTTAVPSPLVAIIVMTIIAVTFHVDVRTVGDMGNISSSLPHFLIPDVPFTF 171 Query: 121 DTLLIIAPYSLSLAVVGLLES 141 +TL II PYS++LA VGLLES Sbjct: 172 ETLQIIFPYSIALAFVGLLES 192 >ref|NP_388039.1| similar to hypothetical proteins [Bacillus subtilis] sp|P55189|YBAR_BACSU Putative sulfate transporter ybaR pir||C69743 conserved hypothetical protein ybaR - Bacillus subtilis emb|CAB11934.1| ybaR [Bacillus subtilis subsp. subtilis str. 168] Length = 478 Score = 153 bits (386), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 76/141 (53%), Positives = 99/141 (70%) Query: 1 VLAGILQILMGMLKRGRFITFLPQPVMTGFVNALAILIFMAQLTHFSGKGWVMYALVVLT 60 +L GI+Q+++G+ K R + F+P+ VM GFVNALAILIF AQL F G W MYA++ + Sbjct: 96 ILTGIIQVILGISKIARLMKFIPRSVMIGFVNALAILIFSAQLPQFEGASWSMYAMLAGS 155 Query: 61 LLIIYSVPRFTKAVPSAXXXXXXXXXXXXXXHLDVRTVGDMGDITPALPVFHLPQLPFTL 120 L+IIY +PRFT AVPS H+DVRTVGDMG+I+ +LP F +P +PFT Sbjct: 156 LVIIYVLPRFTTAVPSPLVAIIVMTIIAVTFHVDVRTVGDMGNISSSLPHFLIPDVPFTF 215 Query: 121 DTLLIIAPYSLSLAVVGLLES 141 +TL II PYS++LA VGLLES Sbjct: 216 ETLQIIFPYSIALAFVGLLES 236 >ref|NP_241280.1| sulfate permease [Bacillus halodurans] pir||F83701 sulfate permease BH0414 [imported] - Bacillus halodurans (strain C-125) dbj|BAB04133.1| sulfate permease [Bacillus halodurans] Length = 486 Score = 150 bits (379), Expect = 9e-36, Method: Compositional matrix adjust. Identities = 77/141 (54%), Positives = 99/141 (70%) Query: 1 VLAGILQILMGMLKRGRFITFLPQPVMTGFVNALAILIFMAQLTHFSGKGWVMYALVVLT 60 +L G+LQIL G+ K + F+P+ VM GFVNALAILIF +QL HF G+ WVMYALV LT Sbjct: 95 ILTGVLQILFGVFKLASVMKFVPRSVMIGFVNALAILIFTSQLQHFVGETWVMYALVALT 154 Query: 61 LLIIYSVPRFTKAVPSAXXXXXXXXXXXXXXHLDVRTVGDMGDITPALPVFHLPQLPFTL 120 L IIY +P+ T AVPS ++ VRTVGD+G +T +LP F +P +PF+ Sbjct: 155 LAIIYLLPKVTTAVPSTLVAIIIVTAIVIFGNIGVRTVGDLGTLTQSLPTFLIPSVPFSF 214 Query: 121 DTLLIIAPYSLSLAVVGLLES 141 +TL+II PYSL+LA+VGLLES Sbjct: 215 ETLMIIFPYSLALAIVGLLES 235 >ref|ZP_00182063.1| hypothetical protein Exigu264801 [Exiguobacterium sp. 255-15] Length = 481 Score = 145 bits (365), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 72/141 (51%), Positives = 94/141 (66%) Query: 1 VLAGILQILMGMLKRGRFITFLPQPVMTGFVNALAILIFMAQLTHFSGKGWVMYALVVLT 60 +LAGI QI++G+ + + F+P+ VM GFVNALAILIF AQL F G+ W+MYA+V + Sbjct: 94 ILAGIFQIILGLAGVAKLLRFIPRAVMVGFVNALAILIFSAQLPQFEGQNWIMYAMVAAS 153 Query: 61 LLIIYSVPRFTKAVPSAXXXXXXXXXXXXXXHLDVRTVGDMGDITPALPVFHLPQLPFTL 120 L II PRFTK +P+ LD R +GDMG I+ +LP F LP +PF+L Sbjct: 154 LAIILIFPRFTKVIPAPLVAITIMTILTVAFSLDTRVIGDMGQISASLPNFFLPNVPFSL 213 Query: 121 DTLLIIAPYSLSLAVVGLLES 141 +TL II PY+LSLA VGL+ES Sbjct: 214 ETLQIIFPYALSLAFVGLIES 234 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.331 0.146 0.433 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 170,800,299 Number of extensions: 5479994 Number of successful extensions: 17968 Number of sequences better than 1.0e-05: 162 Number of HSP's gapped: 17793 Number of HSP's successfully gapped: 162 Length of query: 141 Length of database: 757,237,578 Length adjustment: 102 Effective length of query: 39 Effective length of database: 480,297,480 Effective search space: 18731601720 Effective search space used: 18731601720 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 120 (50.8 bits)