BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0377.0009.p (191 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value dbj|BAA90653.1| Gpx [Paenibacillus polymyxa] 239 2e-62 ref|NP_348176.1| Glutathione peroxidase [Clostridium acetobutyli... 236 3e-61 ref|NP_348198.1| Glutathione peroxidase [Clostridium acetobutyli... 215 4e-55 ref|ZP_00030361.1| COG0386: Glutathione peroxidase [Burkholderia... 201 1e-50 ref|NP_831881.1| Glutathione peroxidase [Bacillus cereus ATCC 14... 200 1e-50 >dbj|BAA90653.1| Gpx [Paenibacillus polymyxa] Length = 181 Score = 239 bits (610), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 109/181 (60%), Positives = 137/181 (75%) Query: 11 VSVYQYSARSIRGKETSLEQYKDKVLLIVNTASKCGFTPQYSDLQKLYEKYQDQGLQILG 70 +S+Y YSA ++ GKE L YKDKV+LIVNTAS+CGFT QY DLQ+LY++++D+GL ILG Sbjct: 1 MSIYDYSAIAMNGKEIVLSDYKDKVVLIVNTASQCGFTFQYQDLQRLYDQFKDRGLVILG 60 Query: 71 FPSNQFGEQEPGSNEEVNVFCQINYGVSFPLFEKVDVKGEQQHPLFTYLTEQAGFEGFDT 130 FP NQF +QEP SNE V FC +NYGV+FP+F+KV+V+ EQ HPLFTYL FEGFD Sbjct: 61 FPCNQFADQEPDSNESVQTFCTLNYGVAFPMFQKVNVRDEQAHPLFTYLASSLPFEGFDE 120 Query: 131 TDSNGKLLHTMLQEREPAALDNDEIKWNFTKFLIDRQGNVVKRYESPVDPMDLEPAIQQL 190 T S K+L ++ ER P L D IKWNFTKFLIDR G V+KR+E+ DP+D+E I+ L Sbjct: 121 THSVAKILIPLIHERHPEYLPGDSIKWNFTKFLIDRNGKVIKRFEATTDPLDMEEYIEAL 180 Query: 191 L 191 L Sbjct: 181 L 181 >ref|NP_348176.1| Glutathione peroxidase [Clostridium acetobutylicum] pir||A97091 glutathione peroxidase [imported] - Clostridium acetobutylicum gb|AAK79516.1| Glutathione peroxidase [Clostridium acetobutylicum] Length = 181 Score = 236 bits (601), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 109/181 (60%), Positives = 138/181 (76%) Query: 11 VSVYQYSARSIRGKETSLEQYKDKVLLIVNTASKCGFTPQYSDLQKLYEKYQDQGLQILG 70 +SVY + A++I GKE SL+ YK KVL+I NTASKCGFTPQY L+KLY++Y+D+GL+ILG Sbjct: 1 MSVYDFKAKTIEGKEVSLDTYKGKVLIIANTASKCGFTPQYEGLEKLYKEYKDKGLEILG 60 Query: 71 FPSNQFGEQEPGSNEEVNVFCQINYGVSFPLFEKVDVKGEQQHPLFTYLTEQAGFEGFDT 130 FPSNQF EQEPG N EV FC++NYGV+F LFEK DV+ E HPLF YLTE A F+GFD Sbjct: 61 FPSNQFAEQEPGDNNEVKNFCKLNYGVTFQLFEKTDVRDENAHPLFNYLTENAPFKGFDL 120 Query: 131 TDSNGKLLHTMLQEREPAALDNDEIKWNFTKFLIDRQGNVVKRYESPVDPMDLEPAIQQL 190 GK+L +L++ P L+ + +KWNFTKFLIDR GNVVKR+E +P D+ I++L Sbjct: 121 NHPTGKMLSEVLEKNFPKFLEGNSVKWNFTKFLIDRDGNVVKRFEPTSEPSDMVKDIEKL 180 Query: 191 L 191 L Sbjct: 181 L 181 >ref|NP_348198.1| Glutathione peroxidase [Clostridium acetobutylicum] pir||G97093 glutathione peroxidase [imported] - Clostridium acetobutylicum gb|AAK79538.1| Glutathione peroxidase [Clostridium acetobutylicum] Length = 181 Score = 215 bits (547), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 95/181 (52%), Positives = 132/181 (72%) Query: 11 VSVYQYSARSIRGKETSLEQYKDKVLLIVNTASKCGFTPQYSDLQKLYEKYQDQGLQILG 70 +S+Y + + I G++ S+E+Y+ K LLIVNTASKCGFTPQY DL+ LY+K++ + ++LG Sbjct: 1 MSIYDFKVKDINGEDISMEEYRGKALLIVNTASKCGFTPQYEDLEALYKKFKGENFEVLG 60 Query: 71 FPSNQFGEQEPGSNEEVNVFCQINYGVSFPLFEKVDVKGEQQHPLFTYLTEQAGFEGFDT 130 FP NQF QEPG+N ++ FCQINYGV+F +F+KVDV GE + PL+ YL EQA F+ D Sbjct: 61 FPCNQFENQEPGTNNDIKKFCQINYGVTFKIFDKVDVNGENEAPLYRYLKEQAPFKELDE 120 Query: 131 TDSNGKLLHTMLQEREPAALDNDEIKWNFTKFLIDRQGNVVKRYESPVDPMDLEPAIQQL 190 + K++ L+E+ P L D IKWNFTKFLID+ G VV R+ES V+PM++E I+ L Sbjct: 121 STPTAKIIAAFLREKLPETLIGDSIKWNFTKFLIDKNGRVVNRFESGVEPMEIESYIKAL 180 Query: 191 L 191 + Sbjct: 181 I 181 >ref|ZP_00030361.1| COG0386: Glutathione peroxidase [Burkholderia fungorum] Length = 159 Score = 201 bits (510), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 97/180 (53%), Positives = 119/180 (66%), Gaps = 23/180 (12%) Query: 12 SVYQYSARSIRGKETSLEQYKDKVLLIVNTASKCGFTPQYSDLQKLYEKYQDQGLQILGF 71 S+Y +SAR++ G+E SLEQY KVLLIVNTAS+CGFTPQY+ LQKLYE Y +GL +LGF Sbjct: 3 SIYSFSARTLGGEEVSLEQYSGKVLLIVNTASECGFTPQYAGLQKLYETYAARGLAVLGF 62 Query: 72 PSNQFGEQEPGSNEEVNVFCQINYGVSFPLFEKVDVKGEQQHPLFTYLTEQAGFEGFDTT 131 P NQFG+QEPG ++ FC+ NYGV+FP+F+KVDV G HPLF YLT +A Sbjct: 63 PCNQFGKQEPGDAAQIGSFCEKNYGVTFPMFDKVDVNGANAHPLFRYLTGEA-------- 114 Query: 132 DSNGKLLHTMLQEREPAALDNDEIKWNFTKFLIDRQGNVVKRYESPVDPMDLEPAIQQLL 191 P L + IKWNFTKFLIDR+GNVVKRY P + I++LL Sbjct: 115 ---------------PGVLGLEAIKWNFTKFLIDREGNVVKRYAPLTKPEAITEDIEKLL 159 >ref|NP_831881.1| Glutathione peroxidase [Bacillus cereus ATCC 14579] gb|AAP09082.1| Glutathione peroxidase [Bacillus cereus ATCC 14579] Length = 160 Score = 200 bits (509), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 94/181 (51%), Positives = 124/181 (68%), Gaps = 23/181 (12%) Query: 11 VSVYQYSARSIRGKETSLEQYKDKVLLIVNTASKCGFTPQYSDLQKLYEKYQDQGLQILG 70 ++VY +SA++I G+E SL+ YK K LLIVN ASKCGFTPQY LQ++Y+KY+DQGL+ILG Sbjct: 1 MTVYDFSAKTITGEEKSLKDYKGKALLIVNVASKCGFTPQYKGLQEVYDKYKDQGLEILG 60 Query: 71 FPSNQFGEQEPGSNEEVNVFCQINYGVSFPLFEKVDVKGEQQHPLFTYLTEQAGFEGFDT 130 FP NQFG QEPG+ ++ FC++NYGV+FP+F KVDVKG++ HPL+TY+TEQA Sbjct: 61 FPCNQFGGQEPGTEADITSFCELNYGVNFPMFAKVDVKGDKAHPLYTYMTEQA------- 113 Query: 131 TDSNGKLLHTMLQEREPAALDNDEIKWNFTKFLIDRQGNVVKRYESPVDPMDLEPAIQQL 190 P L +KWNFTKFLI + G VV R+ P+DLE I+++ Sbjct: 114 ----------------PGLLGMKAVKWNFTKFLIGKDGKVVGRFAPQTKPVDLEVEIEKV 157 Query: 191 L 191 L Sbjct: 158 L 158 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.316 0.134 0.386 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 293,037,844 Number of extensions: 12598420 Number of successful extensions: 36505 Number of sequences better than 1.0e-05: 796 Number of HSP's gapped: 35619 Number of HSP's successfully gapped: 797 Length of query: 191 Length of database: 757,237,578 Length adjustment: 119 Effective length of query: 72 Effective length of database: 434,140,797 Effective search space: 31258137384 Effective search space used: 31258137384 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 122 (51.6 bits)