BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0377.0006.p
         (175 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|ZP_00133190.1| hypothetical protein [Haemophilus somnus 2336]      69   5e-11
ref|NP_660242.1| AbiQ-like protein [Haemophilus influenzae bioty...    67   2e-10

>ref|ZP_00133190.1| hypothetical protein [Haemophilus somnus 2336]
          Length = 162

 Score = 68.6 bits (166), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 47/157 (29%), Positives = 80/157 (50%), Gaps = 10/157 (6%)

Query: 1   MGIHIKICGIHPAYLDYLRAYDPLVSLDPKHNRK--FVGIIFEVNGHKYYAPLSSPKPKH 58
           M   +K+  +   YLD+LR  +P + ++  + +K  FVGI+  +NG KY APLSS     
Sbjct: 3   MNDKLKLYRVTDHYLDFLRDVEPKIPMNKDNGKKRPFVGIVLSINGVKYIAPLSS----- 57

Query: 59  RTIPDRAVDVVKIDGGKLGVINLNNMIPVHKSAIIDIDISHVA--DVQYRGLLTNQALFI 116
           +    ++   VK  G +   I    M P+  SA+I+ID +     D +Y  LL  + L+I
Sbjct: 58  KICKSQSDFKVKSGGEQKATIRFAYMFPIVDSALIEIDYTEEFKIDFKYTALLIKEDLYI 117

Query: 117 RSNEQAIKKKASRLYSIVKSQKQPKLNARCCNYIALE 153
             ++  I + A++ Y+   + K+      CC++  LE
Sbjct: 118 NQHKARIHEIATKTYTNAIT-KRFGFENFCCDFAKLE 153


>ref|NP_660242.1| AbiQ-like protein [Haemophilus influenzae biotype aegyptius]
 ref|NP_858107.1| AbiQ-like protein [Haemophilus influenzae biotype aegyptius]
 gb|AAL47122.1| AbiQ-like protein [Haemophilus influenzae biotype aegyptius]
 gb|AAM64139.1| AbiQ-like protein [Haemophilus influenzae biotype aegyptius]
          Length = 177

 Score = 66.6 bits (161), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 50/158 (31%), Positives = 79/158 (50%), Gaps = 12/158 (7%)

Query: 1   MGIHIKICGIHPAYLDYLRAYDPLV--SLDPKHNRKFVGIIFEVNGHKYYAPLSSPKPKH 58
           M   +K+  +   YLD+LR  +P +  + D    R FVGII  +NG KY APLSS   K 
Sbjct: 18  MNDKLKLYRVTDHYLDFLRKVEPKIPENKDNGKARPFVGIILSINGVKYIAPLSSQIRKS 77

Query: 59  RTIPDRAVDV-VKIDGGKLGVINLNNMIPVHKSAIIDIDIS--HVADVQYRGLLTNQALF 115
           ++      D  VK    +   I    M P+  SA+I+ID +  +  D  Y  LL  + L+
Sbjct: 78  QS------DFKVKSGDEQKATIRFAYMFPIVDSALIEIDYTEEYKIDFNYTALLIKEDLY 131

Query: 116 IRSNEQAIKKKASRLYSIVKSQKQPKLNARCCNYIALE 153
           I  +++ I + A++ Y+   + K+      CC++  LE
Sbjct: 132 INQHKERIHEIATKTYTNTIT-KRFGFENFCCDFAKLE 168


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.321    0.138    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 254,167,365
Number of extensions: 9934501
Number of successful extensions: 23645
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 23643
Number of HSP's successfully gapped: 2
Length of query: 175
Length of database: 757,237,578
Length adjustment: 117
Effective length of query: 58
Effective length of database: 439,570,995
Effective search space: 25495117710
Effective search space used: 25495117710
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 121 (51.2 bits)