BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0377.0003.p (207 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_241258.1| BH0392~unknown conserved protein in B. subtilis... 264 8e-70 ref|NP_388419.1| ydfE [Bacillus subtilis] >gi|7474959|pir||C6978... 250 1e-65 ref|NP_394898.1| conserved hypothetical protein [Thermoplasma ac... 200 2e-50 gb|EAH89367.1| unknown [environmental sequence] 159 5e-38 ref|ZP_00070350.1| COG1853: Conserved protein/domain typically a... 153 2e-36 >ref|NP_241258.1| BH0392~unknown conserved protein in B. subtilis [Bacillus halodurans] pir||H83698 hypothetical protein BH0392 [imported] - Bacillus halodurans (strain C-125) dbj|BAB04111.1| BH0392~unknown conserved protein in B. subtilis [Bacillus halodurans] Length = 202 Score = 264 bits (675), Expect = 8e-70, Method: Compositional matrix adjust. Identities = 124/198 (62%), Positives = 151/198 (76%) Query: 10 QTVTIQPKILYYGTPVILLTTLNEDLTVNISPISSSWALGEHIILGLGTGGKALENLQRK 69 ++ TI+P ILYYGTPVILLTTLNED TVNISPISSS+ LG HI+LG+G GGKA+ENL+R Sbjct: 5 KSTTIKPSILYYGTPVILLTTLNEDGTVNISPISSSFVLGNHIVLGIGVGGKAMENLERH 64 Query: 70 PECVINLPDASLWEQVEGLARLTGKNPVPAEKKEAGFIFEKDKFAYAGLTKAESTRVQTA 129 ECVINLP LWE VE LA TGK PVP EK+ GF FEKDK+ +GLT +S VQ Sbjct: 65 AECVINLPSPELWEHVERLAPYTGKQPVPREKEALGFTFEKDKYGRSGLTPVKSLSVQPD 124 Query: 130 RIAECPIQIEARVNHIRIPEDAAHFAIVETQSVQVHVHKELVAGEHHIDPASWNPLIYNF 189 RIAECP+Q+EA+V +++P + +FAIVET+ + VH H +V +IDP W+PLIYNF Sbjct: 125 RIAECPLQMEAKVIDVKVPAHSPYFAIVETEVLHVHAHDSIVIDNRYIDPVRWSPLIYNF 184 Query: 190 RHYFGLSPELGKSYRSET 207 RHYF L ELGK++RSET Sbjct: 185 RHYFSLGKELGKTFRSET 202 >ref|NP_388419.1| ydfE [Bacillus subtilis] pir||C69780 hypothetical protein ydfE - Bacillus subtilis dbj|BAA19372.1| FUNCTION UNKNOWN. [Bacillus subtilis] emb|CAB12345.1| ydfE [Bacillus subtilis subsp. subtilis str. 168] Length = 207 Score = 250 bits (639), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 116/199 (58%), Positives = 149/199 (74%) Query: 9 RQTVTIQPKILYYGTPVILLTTLNEDLTVNISPISSSWALGEHIILGLGTGGKALENLQR 68 R+ I+PKI+YYGT LLTTLNED T NISP+SSSWALG +IILG+G GGKA++NL+R Sbjct: 9 RRFKEIKPKIMYYGTSTFLLTTLNEDGTTNISPMSSSWALGHYIILGVGLGGKAIDNLER 68 Query: 69 KPECVINLPDASLWEQVEGLARLTGKNPVPAEKKEAGFIFEKDKFAYAGLTKAESTRVQT 128 ECVINLP LWE VE ++ +GK +P KK+ GF ++K+K+ AGLT +S V Sbjct: 69 HKECVINLPGPDLWENVERISSYSGKKSIPPLKKQIGFTYKKEKYEAAGLTPLQSKTVSP 128 Query: 129 ARIAECPIQIEARVNHIRIPEDAAHFAIVETQSVQVHVHKELVAGEHHIDPASWNPLIYN 188 RI ECPIQIEA V HIR+PE + FAIVETQ++ H + ++ E+HI+P+ W+PLIYN Sbjct: 129 TRIKECPIQIEAEVKHIRLPEYESSFAIVETQALHFHAEESIILDENHINPSKWSPLIYN 188 Query: 189 FRHYFGLSPELGKSYRSET 207 FRHYFGL E+GK++RSET Sbjct: 189 FRHYFGLGREVGKTFRSET 207 >ref|NP_394898.1| conserved hypothetical protein [Thermoplasma acidophilum] emb|CAC12564.1| conserved hypothetical protein [Thermoplasma acidophilum] Length = 214 Score = 200 bits (508), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 94/195 (48%), Positives = 134/195 (68%), Gaps = 2/195 (1%) Query: 13 TIQPKILYYGTPVILLTTLNEDLTVNISPISSSWALGEHIILGLGTGGKALENLQRKPEC 72 I+P+ILY+GTPV+L++T++ + VN++PISS+WALG +++G+GT K +ENL+ EC Sbjct: 20 CIRPEILYFGTPVVLISTIDREGKVNLAPISSAWALGYSVVMGIGTESKTMENLRETGEC 79 Query: 73 VINLPDASLWEQVEGLARLTGKNPVPAEKKEAGFIFEKDKFAYAGLTKAESTRVQTARIA 132 +N P+ +LWE VE LA LTGK PVP +K + F FE +KF AGLT +S V+ R+ Sbjct: 80 TLNFPEGALWESVERLAPLTGKYPVPQDKADK-FRFESNKFGVAGLTPCDSEVVKPPRVL 138 Query: 133 ECPIQIEARVNHI-RIPEDAAHFAIVETQSVQVHVHKELVAGEHHIDPASWNPLIYNFRH 191 EC +Q+EA V + RI E IVE + V+VH +L+ +IDP W PLIY+FRH Sbjct: 139 ECRLQMEACVKSVRRISEPDVQAGIVEVKVVRVHARNDLIIDGKYIDPKQWKPLIYSFRH 198 Query: 192 YFGLSPELGKSYRSE 206 YF L +LGK++RS+ Sbjct: 199 YFTLGCDLGKTFRSK 213 >gb|EAH89367.1| unknown [environmental sequence] Length = 233 Score = 159 bits (401), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 80/190 (42%), Positives = 116/190 (61%), Gaps = 7/190 (3%) Query: 15 QPKILYYGTPVILLTTLNEDLTVNISPISSSWALGEHIILGLGTGGKALENLQRKPECVI 74 +P ILY+GTPV+L++TLNED T N++PISS++ LG ++G+ + NL R ECV+ Sbjct: 9 EPNILYFGTPVVLVSTLNEDGTANLAPISSAFWLGWRGVIGIAASSQTTRNLLRTGECVL 68 Query: 75 NLPDASLWEQVEGLARLTGKNPVPAEKKEAGFIFEKDKFAYAGLTKAESTRVQTARIAEC 134 NLP ++ V+ +AR TG PVP K+ G+++E DKF AGLT A S V R EC Sbjct: 69 NLPSSAQAHAVDRIARTTGTWPVPDGKRAKGYVYEPDKFGTAGLTAAASQTVAPPRALEC 128 Query: 135 PIQIEARVNHI-----RIPEDAAHFAIVETQSVQVHVHKELVAGEH--HIDPASWNPLIY 187 P+ +EA V P+ H + E + +VHVH +L+ H IDP W+PLI Sbjct: 129 PVHMEAVVAATHGIGEEAPDVRGHIRVFELRIQRVHVHPDLLMDGHADRIDPDKWSPLIM 188 Query: 188 NFRHYFGLSP 197 +F+ ++GL+P Sbjct: 189 SFQKFYGLTP 198 >ref|ZP_00070350.1| COG1853: Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family [Oenococcus oeni MCW] Length = 205 Score = 153 bits (387), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 73/187 (39%), Positives = 113/187 (60%), Gaps = 4/187 (2%) Query: 19 LYYGTPVILLTTLNE-DLTVNISPISSSWALGEHIILGLGTGGKALENLQRKPECVINLP 77 LYYG PV L+++ N+ + + NI+PISS W+L + +++GLGT +A +NL E ++N+P Sbjct: 18 LYYGFPVALISSWNQTEKSTNITPISSVWSLNDQVVIGLGTNSQAFQNLFETREAILNIP 77 Query: 78 DASLWEQVEGLARLTGKNPVPAEKKEAGFIFEKDKFAYAGLTKAESTRVQTARIAECPIQ 137 D SLW Q+E ++ TGK VP KKE G+ + +KF TK + V+ +I ECPIQ Sbjct: 78 DKSLWRQIEKISNTTGKEKVPNYKKEKGYSYCPNKFQLGSFTKETAKYVRPDKIKECPIQ 137 Query: 138 IEARVNHIRIPEDAAHFAIVETQSVQVHVHKELVAGEHHIDPASWNPLIYNFRHYFGLSP 197 IE ++ I +D FAI+E + + V ++++ ID W+PL+Y FR Y Sbjct: 138 IELKIEKINSRKD---FAIIEAKILASFVERKILKTNQKIDNQKWHPLLYKFREYRSDDL 194 Query: 198 ELGKSYR 204 LG ++R Sbjct: 195 SLGFNFR 201 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.318 0.135 0.402 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 326,744,630 Number of extensions: 13360710 Number of successful extensions: 27913 Number of sequences better than 1.0e-05: 9 Number of HSP's gapped: 27920 Number of HSP's successfully gapped: 9 Length of query: 207 Length of database: 757,237,578 Length adjustment: 120 Effective length of query: 87 Effective length of database: 431,425,698 Effective search space: 37534035726 Effective search space used: 37534035726 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 123 (52.0 bits)