BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0376.0011.p (328 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_242733.1| BH1867~unknown conserved protein [Bacillus halo... 459 e-128 ref|NP_348156.1| Beta-xylosidase, family 43 glycosyl hydrolase [... 414 e-114 ref|ZP_00061257.1| COG3940: Predicted beta-xylosidase [Clostridi... 408 e-112 ref|NP_454762.1| putatuve glycosysl hydrolase [Salmonella enteri... 372 e-102 ref|NP_459153.1| putative cytoplasmic protein [Salmonella typhim... 369 e-101 >ref|NP_242733.1| BH1867~unknown conserved protein [Bacillus halodurans] pir||C83883 probable alpha-N-arabinofuranosidase (EC 3.2.1.55) BH1867 [similarity] - Bacillus halodurans (strain C-125) dbj|BAB05586.1| BH1867~unknown conserved protein [Bacillus halodurans] Length = 327 Score = 459 bits (1180), Expect = e-128, Method: Compositional matrix adjust. Identities = 215/320 (67%), Positives = 249/320 (77%), Gaps = 9/320 (2%) Query: 7 YSNPLVEQRADPWVYKHTDGYYYFTASVPEYDRIEVRRAATIEGLRGAEPVVAWRKYETG 66 Y NP +EQRADPWVYKH DG+YYFT SVP YD IE+RRA T++GLR AEP V WRKY+ G Sbjct: 8 YRNPFIEQRADPWVYKHADGFYYFTGSVPAYDCIELRRAKTLDGLREAEPKVVWRKYDRG 67 Query: 67 PLSANIWAPEIHYIHGKWYIYFAAARTTETKEGLFDHRMYALENESANPLEGRWVEKGQV 126 P+SANIWAPEIHYI GKWYIYFAAART ETK GLFDHRM+ LENESANPLEG W+EKGQ+ Sbjct: 68 PMSANIWAPEIHYIEGKWYIYFAAARTAETKAGLFDHRMFVLENESANPLEGSWIEKGQI 127 Query: 127 KTAWESFALDATAFQHKGVLYYVWAQKDPDIPGNSNLYISEMENPWTLTGPQTMIXXXXQ 186 T WESF+LDAT F+HKGV Y VW QKDP I GNSNLYI+EMENPWT+ G Q Sbjct: 128 FTKWESFSLDATTFEHKGVRYLVWPQKDPSIEGNSNLYIAEMENPWTIKG--------EQ 179 Query: 187 TMIAKPEHPWEIIGFSVNEGAAVLKRNGKIFMSFSASATDHNYCMGXXXXXXXXXXXXXX 246 M++KPE WE+IG+ VNEG AV+KRNGK+F+++SASATDH+YCMG Sbjct: 180 VMLSKPEFDWEVIGYKVNEGPAVIKRNGKVFIAYSASATDHHYCMGLLWANEEADLLDPA 239 Query: 247 XXXKHPEPVFQTSEANGQFGPGHNSFTVNENGE-DVLIYHCRNYKEITGDPLYDPNRHTR 305 K P PVFQTSE NGQ+GPGHNSFTV E+G+ DVL+YH R+YKEI GDPLYDPNRH R Sbjct: 240 SWTKSPTPVFQTSEENGQYGPGHNSFTVTEDGKHDVLVYHARSYKEIEGDPLYDPNRHAR 299 Query: 306 AQVLEWNEDGTPNFGVPVKD 325 ++ W++DG P FG P+ D Sbjct: 300 LKLFTWDKDGFPQFGEPLPD 319 >ref|NP_348156.1| Beta-xylosidase, family 43 glycosyl hydrolase [Clostridium acetobutylicum] pir||E97088 beta-xylosidase, family 43 glycosyl hydrolase CAC1529 [imported] - Clostridium acetobutylicum gb|AAK79496.1| Beta-xylosidase, family 43 glycosyl hydrolase [Clostridium acetobutylicum] Length = 327 Score = 414 bits (1064), Expect = e-114, Method: Compositional matrix adjust. Identities = 199/322 (61%), Positives = 241/322 (74%), Gaps = 11/322 (3%) Query: 9 NPLVEQRADPWVYKHTDGYYYFTASVPEYDRIEVRRAATIEGLRGAEPVVAWRKYETGPL 68 NP++ QRADP +YKH DGYYYFTASVPEYDRIEVR+A TIEGLR AEPV WR++E+G + Sbjct: 8 NPIIIQRADPMIYKHNDGYYYFTASVPEYDRIEVRKAKTIEGLRNAEPVDVWRRHESGEM 67 Query: 69 SANIWAPEIHYIHGKWYIYFAAARTTETKEGLFDHRMYALENESANPLEGRWVEKGQVKT 128 S IWAPEIH+I+G WYIYFAAA ++ F+HRM+ ++NE+ NP G WVEKG++KT Sbjct: 68 SNLIWAPEIHFINGAWYIYFAAAPDKNIEDDTFNHRMFVIQNENENPFTGNWVEKGRIKT 127 Query: 129 AWESFALDATAFQHKGVLYYVWAQKDPDIPGNSNLYISEMENPWTL-TGPQTMIXXXXQT 187 AWESF+LDAT F+H LYYVWAQ+D +I G+SN+YI+EMENPWTL T P Sbjct: 128 AWESFSLDATIFEHNEKLYYVWAQQDINIKGHSNIYIAEMENPWTLKTKP---------V 178 Query: 188 MIAKPEHPWEIIGFSVNEGAAVLKRNGKIFMSFSASATDHNYCMGXXXXXXXXXXXXXXX 247 M+ KPE WEI GF VNEG AVLK+NGKIF+++SASATD NYC+G Sbjct: 179 MLTKPELEWEIKGFWVNEGPAVLKKNGKIFITYSASATDVNYCIGMLTAEENSNLLDKNS 238 Query: 248 XXKHPEPVFQTSEANGQFGPGHNSFTVNENGE-DVLIYHCRNYKEITGDPLYDPNRHTRA 306 K PVF+TS N Q+GPGHNSFTV+E+G+ DV++YH RNY EI GDPLYDPNRHTRA Sbjct: 239 WTKSQTPVFKTSMENHQYGPGHNSFTVSEDGKHDVIVYHARNYTEIKGDPLYDPNRHTRA 298 Query: 307 QVLEWNEDGTPNFGVPVKDGRE 328 Q++ W EDGTP+FGVP D E Sbjct: 299 QIINWREDGTPDFGVPEVDSLE 320 >ref|ZP_00061257.1| COG3940: Predicted beta-xylosidase [Clostridium thermocellum ATCC 27405] Length = 585 Score = 408 bits (1048), Expect = e-112, Method: Compositional matrix adjust. Identities = 187/320 (58%), Positives = 234/320 (73%), Gaps = 13/320 (4%) Query: 8 SNPLVEQRADPWVYKHTDGYYYFTASVPEYDRIEVRRAATIEGLRGAEPVVAWRKYETGP 67 +NP+V +RADPWVY+HTDGYYY TASVPEYDRIE+RR+ T++GL A P WR++ +G Sbjct: 183 TNPIVRRRADPWVYRHTDGYYYMTASVPEYDRIELRRSRTLQGLSTATPKTIWRRHSSGI 242 Query: 68 LSANIWAPEIHYIHGKWYIYFAAARTTETKEGLFDHRMYALENESANPLEGRWVEKGQVK 127 + +IWAPEIH+I GKWYIYF+A +T FD R+Y LE +NPL G WVEKGQ+K Sbjct: 243 MGGHIWAPEIHFIDGKWYIYFSAGTSTN----YFDIRLYVLECSDSNPLTGTWVEKGQLK 298 Query: 128 TAWESFALDATAFQHKGVLYYVWAQKDPDIPGNSNLYISEMENPWTLTGPQTMIXXXXQT 187 T WESF LDAT F+H G Y VWAQKDP I NSN+YI++M P +TG Q Sbjct: 299 TNWESFTLDATTFEHNGTRYLVWAQKDPKIASNSNIYIAKMNGPLAITG--------NQV 350 Query: 188 MIAKPEHPWEIIGFSVNEGAAVLKRNGKIFMSFSASATDHNYCMGXXXXXXXXXXXXXXX 247 MI+ PE+ WE IG++VNEG AVLK+NGKIF++FSASATD NYCMG Sbjct: 351 MISTPEYSWEKIGYAVNEGPAVLKKNGKIFITFSASATDANYCMGLLTASDTANLLDPKS 410 Query: 248 XXKHPEPVFQTSEANGQFGPGHNSFTVNENGE-DVLIYHCRNYKEITGDPLYDPNRHTRA 306 K P PVFQ++ + GQ+GPGHNSFT + +G+ D+++YH RNY++ITGDPLYDPNRHTRA Sbjct: 411 WHKSPNPVFQSNPSTGQYGPGHNSFTTSPDGKVDIMVYHARNYRDITGDPLYDPNRHTRA 470 Query: 307 QVLEWNEDGTPNFGVPVKDG 326 Q++ WN DGTP+FG+PV DG Sbjct: 471 QIVNWNADGTPDFGIPVADG 490 >ref|NP_454762.1| putatuve glycosysl hydrolase [Salmonella enterica subsp. enterica serovar Typhi] ref|NP_804037.1| putatuve glycosysl hydrolase [Salmonella enterica subsp. enterica serovar Typhi Ty2] pir||AC0521 putatuve glycosysl hydrolase [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) emb|CAD01307.1| putatuve glycosysl hydrolase [Salmonella enterica subsp. enterica serovar Typhi] gb|AAO67886.1| putatuve glycosysl hydrolase [Salmonella enterica subsp. enterica serovar Typhi Ty2] Length = 316 Score = 372 bits (956), Expect = e-102, Method: Compositional matrix adjust. Identities = 183/321 (57%), Positives = 227/321 (70%), Gaps = 12/321 (3%) Query: 7 YSNPLVEQRADPWVYKHTDGY-YYFTASVPEYDRIEVRRAATIEGLRGAEPVVAWRKYET 65 + NP +EQRADP++ + DG YYF ASVPEYDR+E+RRA ++EGLR A+PVV WRK E+ Sbjct: 4 WPNPFIEQRADPFILR--DGSDYYFIASVPEYDRLEIRRADSLEGLRAADPVVVWRKPES 61 Query: 66 GPLSANIWAPEIHYIHGKWYIYFAAARTTET-KEGLFDHRMYALENESANPLEGRWVEKG 124 GP+S IWAPE+H I+GKWYIYFAA T K G+F HRM+ALE A+PL G+W EKG Sbjct: 62 GPMSQLIWAPEMHRINGKWYIYFAATHTQALDKLGMFQHRMFALECADADPLTGKWTEKG 121 Query: 125 QVKTAWESFALDATAFQHKGVLYYVWAQKDPDIPGNSNLYISEMENPWTLTGPQTMIXXX 184 Q+KT +++F+LDAT F H+G +Y+WAQK PDI GNSN+Y++E+ENPWTL G Sbjct: 122 QIKTPFDTFSLDATTFYHQGKQWYLWAQKAPDIAGNSNIYLAELENPWTLKG-------- 173 Query: 185 XQTMIAKPEHPWEIIGFSVNEGAAVLKRNGKIFMSFSASATDHNYCMGXXXXXXXXXXXX 244 ++KPE+ WE GF VNEG AV+ K+F+S+SASATD NYCMG Sbjct: 174 EPVRLSKPEYDWECRGFWVNEGPAVVVHGDKLFISYSASATDENYCMGLLWINVNDDPRD 233 Query: 245 XXXXXKHPEPVFQTSEANGQFGPGHNSFTVNENGEDVLIYHCRNYKEITGDPLYDPNRHT 304 K P PVF TS N Q+GPGHNSFT GEDVL+YH RNY EI GDPLYDPNRHT Sbjct: 234 PANWHKSPRPVFTTSYENRQYGPGHNSFTQTSEGEDVLVYHARNYTEIEGDPLYDPNRHT 293 Query: 305 RAQVLEWNEDGTPNFGVPVKD 325 R + + W+E+G P+FGVP D Sbjct: 294 RLKRVRWDENGMPDFGVPPAD 314 >ref|NP_459153.1| putative cytoplasmic protein [Salmonella typhimurium LT2] emb|CAB89837.1| hypothetical protein [Salmonella typhimurium] gb|AAL19112.1| putative cytoplasmic protein [Salmonella typhimurium LT2] Length = 316 Score = 369 bits (948), Expect = e-101, Method: Compositional matrix adjust. Identities = 182/321 (56%), Positives = 227/321 (70%), Gaps = 12/321 (3%) Query: 7 YSNPLVEQRADPWVYKHTDGY-YYFTASVPEYDRIEVRRAATIEGLRGAEPVVAWRKYET 65 + NP +EQRADP++ + DG YYF ASVPEYDR+E+RRA ++EGLR A+PVV WRK E+ Sbjct: 4 WPNPFIEQRADPFILR--DGSDYYFIASVPEYDRLEIRRANSLEGLRAADPVVVWRKPES 61 Query: 66 GPLSANIWAPEIHYIHGKWYIYFAAARTTET-KEGLFDHRMYALENESANPLEGRWVEKG 124 GP+S IWAPE+H I+GKWYIYFAA T K G+F HRM+ALE A+PL G+W EKG Sbjct: 62 GPMSQLIWAPEMHRINGKWYIYFAATHTQALDKLGMFQHRMFALECADADPLTGKWTEKG 121 Query: 125 QVKTAWESFALDATAFQHKGVLYYVWAQKDPDIPGNSNLYISEMENPWTLTGPQTMIXXX 184 Q+KT +++FALDAT F H+G +Y+WAQK PDI GNSN+Y++E+ENPWT+ G Sbjct: 122 QIKTPFDTFALDATTFYHQGKQWYLWAQKAPDIAGNSNIYLAELENPWTIKG-------- 173 Query: 185 XQTMIAKPEHPWEIIGFSVNEGAAVLKRNGKIFMSFSASATDHNYCMGXXXXXXXXXXXX 244 ++KPE+ WE GF VNEG AV+ K+F+S+SASATD NYCMG Sbjct: 174 EPVRLSKPEYDWECRGFWVNEGPAVVVHGDKLFISYSASATDENYCMGLLWINVNDDPRD 233 Query: 245 XXXXXKHPEPVFQTSEANGQFGPGHNSFTVNENGEDVLIYHCRNYKEITGDPLYDPNRHT 304 K P PVF TS N Q+GPGHNSFT GE+VL+YH RNY EI GDPLYDPNRHT Sbjct: 234 PANWHKSPRPVFTTSYENRQYGPGHNSFTQTPEGENVLVYHARNYTEIEGDPLYDPNRHT 293 Query: 305 RAQVLEWNEDGTPNFGVPVKD 325 R + + W+E+G P+FGVP D Sbjct: 294 RLKRVRWDENGMPDFGVPPAD 314 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.316 0.134 0.427 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 526,694,123 Number of extensions: 20932047 Number of successful extensions: 38028 Number of sequences better than 1.0e-05: 50 Number of HSP's gapped: 37861 Number of HSP's successfully gapped: 50 Length of query: 328 Length of database: 757,237,578 Length adjustment: 126 Effective length of query: 202 Effective length of database: 415,135,104 Effective search space: 83857291008 Effective search space used: 83857291008 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 126 (53.1 bits)