BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0376.0008.p (304 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_470103.1| similar to ABC transporter, permease protein [L... 181 2e-44 ref|NP_695408.1| sugar permease of ABC transporter system [Bifid... 180 4e-44 ref|NP_464294.1| similar to ABC transporter, permease protein [L... 179 7e-44 ref|ZP_00121190.1| COG0395: ABC-type sugar transport system, per... 178 1e-43 gb|EAJ27354.1| unknown [environmental sequence] 169 8e-41 >ref|NP_470103.1| similar to ABC transporter, permease protein [Listeria innocua] pir||AI1527 ABC transporter, permease protein homolog lin0761 [imported] - Listeria innocua (strain Clip11262) emb|CAC95993.1| lin0761 [Listeria innocua] Length = 291 Score = 181 bits (460), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 95/283 (33%), Positives = 155/283 (54%), Gaps = 19/283 (6%) Query: 33 YISYLFLIVLCIIWIIPVVFGITTSFRSQSEVVSSGFRLFPKEWIFDNYVAILENTSTAP 92 +I Y+ ++++ ++ + P+++ ++TSF+ SE++S+ L PK + +DNY + ST P Sbjct: 13 FIWYIAVLLISLVTVFPLIWTVSTSFKPTSEILSNSMNLIPKMFTWDNYKDVF---STTP 69 Query: 93 ILRWLMNSLFIASMHTLLVVVVISITGYGYSRMKFKGRDTLFFTLLGISFFPGVVNLIPS 152 R+L+NSL +A L + S+ GY ++++ FKG+ LF T LG P VV +IPS Sbjct: 70 FARYLVNSLILAVGGVLTNLFFGSLAGYAFAKLPFKGKKGLFMTFLGSMMIPAVVTMIPS 129 Query: 153 YKIID--------------ALGWVNTSWAMIIPGLAGMGNIFLVRQFMNGIPKDLDESAH 198 + ++ +G++NT WA++IPG AG +IF ++QF +P +L E+A Sbjct: 130 FLVLKNFPLMGGNDITGHGGMGFINTYWAILIPGAAGAFSIFFMKQFFETLPDELSEAAR 189 Query: 199 VDGAGHFRIYFSXXXXXXXXXXXXCALFSFTGSWNDFLWPVIVFTDVDKMPVTAGLLLLQ 258 +DG F+I++ + +F WN F+WP+IV M V GL Q Sbjct: 190 IDGCSEFKIFWKIYMPLAKTALATLGIMTFQAGWNQFMWPLIVLNSQKMMTVQVGLASFQ 249 Query: 259 DIYGNYRMIGQLMGSAVLAIIPTLLLFLFAQKYFVQSINLNSG 301 Y G LM +++ IP L +F+FAQKYFV+ I N G Sbjct: 250 --YNESANYGALMAGTIVSTIPVLFVFIFAQKYFVEGIAHNGG 290 >ref|NP_695408.1| sugar permease of ABC transporter system [Bifidobacterium longum NCC2705] gb|AAN24044.1| sugar permease of ABC transporter system [Bifidobacterium longum NCC2705] Length = 308 Score = 180 bits (456), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 100/302 (33%), Positives = 164/302 (54%), Gaps = 9/302 (2%) Query: 2 SNQVAQQYDKRPRFKEQGTVKSKSPGISISKYISYLFLIVLCIIWIIPVVFGITTSFRSQ 61 ++ A+ + R ++Q K +IS +SY+ L ++ + I P++ + SF Sbjct: 16 ESENARINAENERLRKQARAKR-----TISLTLSYVALALVTFLMIFPLIIVVIVSFTPN 70 Query: 62 SEVVSSGFRLFPKEWIFDNYVAILENTSTAPILRWLMNSLFIASMHTLLVVVVISITGYG 121 + + ++ P W DNY ++ + PI R L+N++ A T++ V S+ YG Sbjct: 71 AVTQTWPPKIIPSAWTLDNYTSLFQRL---PIGRELLNTIVFAGAVTIISVFFDSLAAYG 127 Query: 122 YSRMKFKGRDTLFFTLLGISFFPGVVNLIPSYKIIDALGWVNTSWAMIIPGLAGMGNIFL 181 SR+ FKGR L L+ P + LIP YK++ ++G VN+ +IIP +A +G IFL Sbjct: 128 LSRVDFKGRGILLAVLIATMMIPAMALLIPVYKLLGSMGLVNSYLGIIIPRMADVGGIFL 187 Query: 182 VRQFMNGIPKDLDESAHVDGAGHFRIYFSXXXXXXXXXXXXCALFSFTGSWNDFLWPVIV 241 +RQF IPKDLD +A +DGAG FRI+ +F+F G+WND LWP+I+ Sbjct: 188 LRQFFISIPKDLDNAARIDGAGEFRIFAQIILPNAVPAILTVGMFNFMGNWNDLLWPLIM 247 Query: 242 FTDVDKMPVTAGLLLLQDIYGNYRMIGQLMGSAVLAIIPTLLLFLFAQKYFVQSINLNSG 301 + + +TAGL +L + G +M A+++ +P L++F F QK FV+ I + +G Sbjct: 248 TSKPETRTITAGLAMLTGHGSSVTPYGVVMAGALISALPLLIVFFFVQKRFVEGIAM-TG 306 Query: 302 IK 303 +K Sbjct: 307 MK 308 >ref|NP_464294.1| similar to ABC transporter, permease protein [Listeria monocytogenes EGD-e] pir||AG1170 ABC transporter, permease protein homolog lmo0767 [imported] - Listeria monocytogenes (strain EGD-e) emb|CAC98845.1| lmo0767 [Listeria monocytogenes] Length = 291 Score = 179 bits (454), Expect = 7e-44, Method: Compositional matrix adjust. Identities = 94/283 (33%), Positives = 155/283 (54%), Gaps = 19/283 (6%) Query: 33 YISYLFLIVLCIIWIIPVVFGITTSFRSQSEVVSSGFRLFPKEWIFDNYVAILENTSTAP 92 +I Y+ ++++ ++ + P+++ ++TSF+ SE++S+ L PK + +DNY + ST P Sbjct: 13 FIWYIAVLLISLVTVFPLIWTVSTSFKPTSEILSNSMNLIPKMFTWDNYKDVF---STTP 69 Query: 93 ILRWLMNSLFIASMHTLLVVVVISITGYGYSRMKFKGRDTLFFTLLGISFFPGVVNLIPS 152 R+L+NSL +A L + S+ GY ++++ FKG+ LF T LG P VV +IPS Sbjct: 70 FARYLVNSLILAVGGVLTNLFFGSLAGYAFAKLPFKGKKGLFMTFLGSMMIPAVVTMIPS 129 Query: 153 YKIID--------------ALGWVNTSWAMIIPGLAGMGNIFLVRQFMNGIPKDLDESAH 198 + ++ +G++NT WA++IPG AG +IF ++QF +P +L E+A Sbjct: 130 FLVLKNFPLMGGNDITGHGGMGFINTYWAILIPGAAGAFSIFFMKQFFETLPDELSEAAR 189 Query: 199 VDGAGHFRIYFSXXXXXXXXXXXXCALFSFTGSWNDFLWPVIVFTDVDKMPVTAGLLLLQ 258 +DG F+I++ + +F WN F+WP+IV M V GL Q Sbjct: 190 IDGCSEFKIFWKIYMPLAKTALATLGIMTFQAGWNQFMWPLIVLNSQKMMTVQVGLASFQ 249 Query: 259 DIYGNYRMIGQLMGSAVLAIIPTLLLFLFAQKYFVQSINLNSG 301 Y G LM +++ IP L +F+FAQKYFV+ I + G Sbjct: 250 --YNESANYGALMAGTIVSTIPVLFVFIFAQKYFVEGIAHSGG 290 >ref|ZP_00121190.1| COG0395: ABC-type sugar transport system, permease component [Bifidobacterium longum DJO10A] Length = 308 Score = 178 bits (452), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 99/302 (32%), Positives = 164/302 (54%), Gaps = 9/302 (2%) Query: 2 SNQVAQQYDKRPRFKEQGTVKSKSPGISISKYISYLFLIVLCIIWIIPVVFGITTSFRSQ 61 ++ A+ + R ++Q K +IS +SY+ L ++ + I P++ + SF Sbjct: 16 ESENARINAENERLRKQARAKR-----TISLTLSYVALALVTFLMIFPLIIVVIVSFTPN 70 Query: 62 SEVVSSGFRLFPKEWIFDNYVAILENTSTAPILRWLMNSLFIASMHTLLVVVVISITGYG 121 + + ++ P W DNY ++ + PI R L+N++ A T++ V S+ YG Sbjct: 71 AVTQTWPPKIIPSAWTLDNYTSLFQRL---PIGRELLNTIVFAGAVTIISVFFDSLAAYG 127 Query: 122 YSRMKFKGRDTLFFTLLGISFFPGVVNLIPSYKIIDALGWVNTSWAMIIPGLAGMGNIFL 181 SR+ FKGR L L+ P + LIP YK++ ++G VN+ +IIP +A +G IFL Sbjct: 128 LSRVDFKGRGILLAVLIATMMIPAMALLIPVYKLLGSMGLVNSYLGIIIPRMADVGGIFL 187 Query: 182 VRQFMNGIPKDLDESAHVDGAGHFRIYFSXXXXXXXXXXXXCALFSFTGSWNDFLWPVIV 241 +R+F IPKDLD +A +DGAG FRI+ +F+F G+WND LWP+I+ Sbjct: 188 LRRFFISIPKDLDNAARIDGAGEFRIFAQIILPNAVPAILTVGMFNFMGNWNDLLWPLIM 247 Query: 242 FTDVDKMPVTAGLLLLQDIYGNYRMIGQLMGSAVLAIIPTLLLFLFAQKYFVQSINLNSG 301 + + +TAGL +L + G +M A+++ +P L++F F QK FV+ I + +G Sbjct: 248 TSKPETRTITAGLAMLTGHGSSVTPYGVVMAGALISALPLLIVFFFVQKRFVEGIAM-TG 306 Query: 302 IK 303 +K Sbjct: 307 MK 308 >gb|EAJ27354.1| unknown [environmental sequence] Length = 282 Score = 169 bits (428), Expect = 8e-41, Method: Compositional matrix adjust. Identities = 96/290 (33%), Positives = 161/290 (55%), Gaps = 10/290 (3%) Query: 16 KEQGTVKSKSPGISISKYISYLFLIVLCIIWIIPVVFGITTSFRSQSEVVSSGFRLFPKE 75 K+ + + ++ SK +++ L + I+ + P++F ++TSF++ EV + LFPK Sbjct: 2 KKNDQIIERLEHLNPSKILTWTLLFIGSIVMVTPIIFMVSTSFKTGQEVYT--LSLFPKS 59 Query: 76 WIFDNYVAILENTSTAPILRWLMNSLFIASMHTLLVVVVISITGYGYSRMKFKGRDTLFF 135 F+NY+ IL+ + L WL+NSL++A+ T+ V+ S+ GY ++ KF+GR+ +F Sbjct: 60 PTFENYIFILKESK---FLIWLLNSLWVATFSTISVLFFDSLVGYTLAKFKFRGREIVFI 116 Query: 136 TLLGISFFPGVVNLIPSYKIIDALGWVNTSWAMIIPGLAGMGNIFLVRQFMNGIPKDLDE 195 +L P + +IP Y + GW++T W + PGL FL+RQF +P +L E Sbjct: 117 AILSTLMIPTEMLIIPWYMMSREFGWIDTYWGIAFPGLMTGFGTFLMRQFFLTLPDELIE 176 Query: 196 SAHVDGAGHFRIYFSXXXXXXXXXXXXCALFSFTGSWNDFLWPVIVFTDVDKMPVTAGLL 255 +A +DG F I++ A+F F G+W FLWP+I+ D D + G Sbjct: 177 AARIDGWSEFAIWWKIAMPLVIPALSALAIFHFLGNWTAFLWPLIIVNDPDMYTIPVG-- 234 Query: 256 LLQDIYGNYRMIGQL-MGSAVLAIIPTLLLFLFAQKYFVQSINLNSGIKG 304 L G ++M ++ M ++ LA IPTL +F+F QKY ++ I L +G+KG Sbjct: 235 -LASFNGEFQMDWEIVMTASCLATIPTLFVFIFLQKYIIKGIML-AGLKG 282 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.328 0.143 0.442 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 440,059,133 Number of extensions: 17730714 Number of successful extensions: 68860 Number of sequences better than 1.0e-05: 1244 Number of HSP's gapped: 66704 Number of HSP's successfully gapped: 1246 Length of query: 304 Length of database: 757,237,578 Length adjustment: 125 Effective length of query: 179 Effective length of database: 417,850,203 Effective search space: 74795186337 Effective search space used: 74795186337 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 125 (52.8 bits)