BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0376.0007.p (309 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_242731.1| sugar transport system (permease) (binding prot... 128 2e-28 ref|NP_470102.1| similar to putative sugar ABC transporter, perm... 124 3e-27 ref|NP_464293.1| similar to putative sugar ABC transporter, perm... 124 3e-27 ref|ZP_00017643.1| hypothetical protein [Chloroflexus aurantiacus] 121 2e-26 ref|NP_216556.1| hypothetical protein Rv2040c [Mycobacterium tub... 119 1e-25 >ref|NP_242731.1| sugar transport system (permease) (binding protein dependent transporter) [Bacillus halodurans] pir||A83883 sugar transport system (permease) (binding protein dependent transporter) BH1865 [imported] - Bacillus halodurans (strain C-125) dbj|BAB05584.1| sugar transport system (permease) (binding protein dependent transporter) [Bacillus halodurans] Length = 309 Score = 128 bits (322), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 87/266 (32%), Positives = 130/266 (48%), Gaps = 13/266 (4%) Query: 29 FVGPHVILFAVFILLPTFYGIYASFTKWNLMNEPVWVGLDNYKTILFDSGSTFHTQFNNG 88 F+ P +I FA+F L P Y IY SFT ++L NEPVW G DNY + T FN Sbjct: 33 FIAPPIIGFAIFALGPMLYSIYVSFTDFDLYNEPVWTGADNYYRLFVTDDLFRKTVFNT- 91 Query: 89 LKNTFIFXXXXXXXXXXXXXXXXXXXEHKKVKGKSLIQSIIYVPGLISISAGALIWLLLF 148 F ++KVKG +L ++ ++P + S+ A L+W +F Sbjct: 92 ------FYAALGIPIGMAVSLGIAVALNQKVKGIALFRTAFFLPAVSSVVAITLLWRWIF 145 Query: 149 NKQLGMAG---NVFG-SDVSWPANQPYAWXXXXXXXXXXXXXXNMIIYRASISGVSQDLY 204 N G+ N G W +++ +A NMI+Y A++ GV+ LY Sbjct: 146 NADFGLLNIMLNYVGIHGPGWLSDEKWAMPAMIIQGVWGGLGINMILYLAALQGVNPALY 205 Query: 205 ESAEMDGAGTIRRFTSITLPSIRFPLIYTFVMTTAGAFNVFGQPLMMTDGGPRQSTHVLM 264 E+A++DG ++F IT+PSI + + +T GA F + ++MT+GGP ST ++ Sbjct: 206 EAADIDGGNAWQKFIHITVPSISPTTFFILITSTIGALQDFQRFMIMTEGGPNYSTTTVV 265 Query: 265 MYIRQLAFGNGESIAGMASAMAVLLG 290 Y+ AF E G ASAMA +LG Sbjct: 266 YYLFLNAFRYME--MGYASAMAWVLG 289 >ref|NP_470102.1| similar to putative sugar ABC transporter, permease protein [Listeria innocua] pir||AH1527 probable sugar ABC transporter, permease protein homolog lin0760 [imported] - Listeria innocua (strain Clip11262) emb|CAC95992.1| lin0760 [Listeria innocua] Length = 296 Score = 124 bits (311), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 86/276 (31%), Positives = 129/276 (46%), Gaps = 13/276 (4%) Query: 29 FVGPHVILFAVFILLPTFYGIYASFTKWNLMNEPVWVGLDNYKTILFDSGSTFHTQFNNG 88 F+ V+L A+F++LP ++ SFT ++++N P W+G DNY + D F Sbjct: 20 FIALPVLLLAIFMILPIGMALFVSFTDYDIVNSPNWIGFDNYIKMFRDP------YFLIS 73 Query: 89 LKNTFIFXXXXXXXXXXXXXXXXXXXEHKKVKGKSLIQSIIYVPGLISISAGALIWLLLF 148 LKNT I+ K KG L ++ YVP L S A A IW L Sbjct: 74 LKNTIIYTALFVPLGLVASLGAAILINMNK-KGAGLFRTFFYVPVLCSTVATATIWYWLL 132 Query: 149 NKQLGMAGNVFG----SDVSWPANQPYAWXXXXXXXXXXXXXXNMIIYRASISGVSQDLY 204 N Q G+ V G + +W + +A NM+I+ A + G+ +LY Sbjct: 133 NPQYGLINRVLGWFGINGPAWLYDSNWAMFAIVMMSVWMTFGTNMMIFLAGLQGIPANLY 192 Query: 205 ESAEMDGAGTIRRFTSITLPSIRFPLIYTFVMTTAGAFNVFGQPLMMTDGGPRQSTHVLM 264 E+++++GA + F +T PS+ M AF VF Q ++T GGP ST L+ Sbjct: 193 EASKIEGASRWKTFRYVTWPSLSRTTFLVTTMLIINAFQVFDQAYVLTKGGPGNSTITLV 252 Query: 265 MYIRQLAFGNGESIAGMASAMAVLLGLVILVISALQ 300 YI FG + G ASA++ +L L+ILV S + Sbjct: 253 YYIYNEGFGGLK--MGYASAISFVLFLIILVFSIIN 286 >ref|NP_464293.1| similar to putative sugar ABC transporter, permease protein [Listeria monocytogenes EGD-e] pir||AF1170 probable sugar ABC transporter, permease protein homolog lmo0766 [imported] - Listeria monocytogenes (strain EGD-e) emb|CAC98844.1| lmo0766 [Listeria monocytogenes] Length = 296 Score = 124 bits (310), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 86/276 (31%), Positives = 129/276 (46%), Gaps = 13/276 (4%) Query: 29 FVGPHVILFAVFILLPTFYGIYASFTKWNLMNEPVWVGLDNYKTILFDSGSTFHTQFNNG 88 F+ V+L A+F++LP ++ SFT ++++N P W+G DNY + D F Sbjct: 20 FIALPVLLLAIFMILPIGMALFVSFTDYDIVNSPNWIGFDNYIKMFRDP------YFLIS 73 Query: 89 LKNTFIFXXXXXXXXXXXXXXXXXXXEHKKVKGKSLIQSIIYVPGLISISAGALIWLLLF 148 LKNT I+ K KG L ++ YVP L S A A IW L Sbjct: 74 LKNTIIYTALFVPLGLVASLGAAILINMNK-KGAGLFRTFFYVPVLCSTVATATIWYWLL 132 Query: 149 NKQLGMAGNVFG----SDVSWPANQPYAWXXXXXXXXXXXXXXNMIIYRASISGVSQDLY 204 N Q G+ V G + +W + +A NM+I+ A + G+ +LY Sbjct: 133 NPQYGLINRVLGWFGINGPAWLYDSNWAMFAIVMMSVWMTFGTNMMIFLAGLQGIPANLY 192 Query: 205 ESAEMDGAGTIRRFTSITLPSIRFPLIYTFVMTTAGAFNVFGQPLMMTDGGPRQSTHVLM 264 E+++++GA + F +T PS+ M AF VF Q ++T GGP ST L+ Sbjct: 193 EASKIEGASRWKTFRYVTWPSLSRTTFLVTTMLIINAFQVFDQAYVLTKGGPGNSTITLV 252 Query: 265 MYIRQLAFGNGESIAGMASAMAVLLGLVILVISALQ 300 YI FG + G ASA++ +L L+ILV S + Sbjct: 253 YYIYNEGFGGLK--MGYASAISFVLFLIILVFSIIN 286 >ref|ZP_00017643.1| hypothetical protein [Chloroflexus aurantiacus] Length = 296 Score = 121 bits (304), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 85/279 (30%), Positives = 143/279 (51%), Gaps = 11/279 (3%) Query: 29 FVGPHVILFAVFILLPTFYGIYASFTKWNLMNEPVWVGLDNYKTILFDSGSTFHTQFNNG 88 F+ P +I+F +F L+ Y +Y SFT++NL+ P W G++ Y+ +L F T+ Sbjct: 19 FISPWLIIFVIFSLISLGYAVYLSFTEYNLLRPPRWWGIEGYQRVL--ENELFLTK---A 73 Query: 89 LKNTFIFXXXXXXXXXXXXXXXXXXXEHKKVKGKSLIQSIIYVPGLISISAGALIWLLLF 148 L NTF + + + ++ + ++I Y+P + S +LI++ +F Sbjct: 74 LPNTFKYVLIVVPIQTFLSLVLAFAMD-QNLRFQRFFRTIFYLPSVTSSVVISLIFIWIF 132 Query: 149 NKQLGMAGNVFGSDVSWPANQPYAWXXXXXXXXXXXXXXNMIIYRASISGVSQDLYESAE 208 Q G+ + G V+W + A+ M+I+ A + + +YE+AE Sbjct: 133 APQ-GIFNQITGLTVNWLDDPRTAFYVIMGMNIFTTSGTLMLIFLAGLQDIPLAVYEAAE 191 Query: 209 MDGAGTIRRFTSITLPSIRFPLIYTFVMTTA--GAFNVFGQPLMMTDGGPRQSTHVLMMY 266 +DGA +++F IT+P +R P+I+ FV+T G F VF Q +MT GGP ST + Sbjct: 192 IDGANGLQKFFYITIPMLR-PVIF-FVVTVGVIGCFQVFDQIYVMTAGGPLDSTTTITYL 249 Query: 267 IRQLAFGNGESIAGMASAMAVLLGLVILVISALQYYVMN 305 I + AF + G ASA+AV+L L+IL ++ LQ V+ Sbjct: 250 IYKWAFRDTRIQMGQASALAVILTLIILAVTLLQRRVIE 288 >ref|NP_216556.1| hypothetical protein Rv2040c [Mycobacterium tuberculosis H37Rv] ref|NP_336565.1| sugar ABC transporter, permease protein [Mycobacterium tuberculosis CDC1551] ref|NP_855716.1| Probable sugar-transport integral membrane protein ABC transporter [Mycobacterium bovis subsp. bovis AF2122/97] pir||G70943 hypothetical protein Rv2040c - Mycobacterium tuberculosis (strain H37RV) emb|CAA17254.1| Probable sugar-transport integral membrane protein ABC transporter [Mycobacterium tuberculosis H37Rv] gb|AAK46379.1| sugar ABC transporter, permease protein [Mycobacterium tuberculosis CDC1551] emb|CAD96919.1| Probable sugar-transport integral membrane protein ABC transporter [Mycobacterium bovis subsp. bovis AF2122/97] Length = 300 Score = 119 bits (297), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 84/286 (29%), Positives = 142/286 (49%), Gaps = 14/286 (4%) Query: 29 FVGPHVILFAVFILLPTFYGIYASFTKWNLMNEPVWVGLDNYKTILFDSGSTFHTQFNNG 88 FV P++ VF+L P + +Y SF KW+L +V LDN++ LF S F Sbjct: 15 FVAPNLAAVVVFMLFPLGFSLYMSFQKWDLFTHATFVRLDNFRN-LFTSDPLFLI----A 69 Query: 89 LKNTFIFXXXXXXXXXXXXXXXXXXXEHKKVKGKSLIQSIIYVPGLISISAGALIWLLLF 148 + NT ++ ++K+KG SL ++++++P IS A++W +F Sbjct: 70 VVNTAVYTVGTVVPTVIVSLVVAAFL-NRKIKGISLFRTVVFLPLAISSVVMAVVWQFVF 128 Query: 149 NKQLGMAGNVFG----SDVSWPANQPYAWXXXXXXXXXXXXXXNMIIYRASISGVSQDLY 204 N G+ + G + W +A ++ A++ GV + +Y Sbjct: 129 NTDNGLLNIMLGWLGIGPIPWLIEPRWAMVSLCLVSVWRSVPFATVVLLAAMQGVPETVY 188 Query: 205 ESAEMDGAGTIRRFTSITLPSIRFPLIYTFVMTTAGAFNVFGQPLMMT--DGGPRQSTHV 262 E+A +DGAG IR+F SIT+P IR L + V++ AF F ++T +GGP +T+V Sbjct: 189 EAARIDGAGEIRQFVSITVPLIRGALSFVVVISIIHAFQAFDLVYVLTGANGGPETATYV 248 Query: 263 LMMYIRQLAFGNGESIAGMASAMAVLLGLVILVISALQYYVMNRNA 308 L + + Q AF E G ASA+A ++ ++LV++ LQ + +R + Sbjct: 249 LGIMLFQHAFSFLEF--GYASALAWVMFAILLVLTVLQLRITHRRS 292 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.326 0.140 0.431 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 377,584,475 Number of extensions: 13343908 Number of successful extensions: 43070 Number of sequences better than 1.0e-05: 921 Number of HSP's gapped: 42430 Number of HSP's successfully gapped: 921 Length of query: 309 Length of database: 757,237,578 Length adjustment: 125 Effective length of query: 184 Effective length of database: 417,850,203 Effective search space: 76884437352 Effective search space used: 76884437352 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 126 (53.1 bits)