BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0373.0012.p (354 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_244248.1| BH3382~unknown conserved protein [Bacillus halo... 114 4e-24 ref|NP_147773.1| capM protein [Aeropyrum pernix] >gi|7520949|pir... 77 6e-13 ref|NP_275316.1| LPS biosynthesis RfbU related protein [Methanot... 71 4e-11 gb|EAA93992.1| unknown [environmental sequence] 71 4e-11 gb|EAJ81041.1| unknown [environmental sequence] 70 9e-11 >ref|NP_244248.1| BH3382~unknown conserved protein [Bacillus halodurans] pir||F84072 hypothetical protein BH3382 [imported] - Bacillus halodurans (strain C-125) dbj|BAB07101.1| BH3382~unknown conserved protein [Bacillus halodurans] Length = 356 Score = 114 bits (284), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 84/295 (28%), Positives = 135/295 (45%), Gaps = 10/295 (3%) Query: 1 MRILYFYKFCLLGGVTTQLANRLKFLHGR-AEVHFAFLEDYGGASAFEGYAHVCILGTPS 59 M+IL+ + + GGV T +R L+ E HF +L++ G + G A + Sbjct: 1 MKILFTF-YLATGGVVTLNRHRYHALNSEDCECHFLYLKNGSGLNTM-GNARTYVTNDDE 58 Query: 60 ELRAYIEAHDFDVIITIDTYELYEALGPAEQKKVIIHEVH---TTYEEPLRKLAESKDIL 116 +++A + A +DVI+ + L K II +V T +E K + Sbjct: 59 DIKALLYAKQYDVIVVTLDFLFVNRLRRLGYKGKIIFDVQGFGTDIKELFEKANDHFITG 118 Query: 117 PFNYVITPSDYMKEMLDQIGIPD--AYHINNCLDTELFKYEAVSGKRPPTILWVGKLDQH 174 + +++P E L P A+H +NC+ +F + + I WVG+++++ Sbjct: 119 EVDAILSPKTSHLEQLIAHHFPSTPAFHFHNCITFSMFTCKPQPKPKRTIIGWVGRIEEN 178 Query: 175 KNWESFMNIAGRLNAQFPDLHYLLVGGYTAPDEITSK-LQARVKALELR-HFEWLPKVDY 232 KNW F+ I +L + L + A + K + VK L+LR H L V Y Sbjct: 179 KNWRYFLKIGEKLLKEDSSLELWIFEDPKAANPSEKKHFHSMVKKLKLRNHMRSLQNVPY 238 Query: 233 EEMNHYYSAVAESGGVYVSTTRNESFGMTVLEAMACRCPVVVPDVGALPELLDDE 287 E M +YS + SGG ST++ E FG VLEAM C+CPVV D + + +E Sbjct: 239 ERMAEFYSLMGRSGGFLCSTSKKEGFGYAVLEAMCCKCPVVCTDSDGIKSFVINE 293 >ref|NP_147773.1| capM protein [Aeropyrum pernix] pir||C72590 probable hexosyltransferase (EC 2.4.1.-) APE1191 [similarity] - Aeropyrum pernix (strain K1) dbj|BAA80177.1| 363aa long hypothetical capM protein [Aeropyrum pernix] Length = 363 Score = 77.0 bits (188), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 72/294 (24%), Positives = 129/294 (43%), Gaps = 26/294 (8%) Query: 67 AHDFDVIITIDTYELYEALGPAEQKKVIIHEVHTTYEE--------PLRKLAES--KDIL 116 H++DVI+ D P K ++ ++H +++ PL + K I Sbjct: 79 GHEYDVIVD-DIAHAVPWYSPLVTKTPVVAQIHHVHQDVVYIELPKPLAWIVSRAEKTIA 137 Query: 117 PF--NYVITPSDYMKEMLDQIGI-PDAYHI-NNCLDTELFKYEAVSGKRPPTILWVGKLD 172 ++ KE+ ++GI PD + N +D E KY S PTILW G++ Sbjct: 138 KIYRRFIAVSQSTKKELAKRLGIDPDRIAVVPNGVDLE--KYRPGSKDPRPTILWAGRIK 195 Query: 173 QHKNWESFMNIAGRLNAQFPDLHYLLVGGYTAPDEITSKLQARVKALELRHFEWLPKVDY 232 +KN + + + + PD +++G T E K++ K LE R +L K+ Sbjct: 196 MYKNLDHLLKAYRIVKQEIPDAQLIIIG--TGDQE--QKMRELAKKLEPRDVHFLGKMSE 251 Query: 233 EEMNHYYSAVAESGGVYVSTTRNESFGMTVLEAMACRCPVVVPDVGALPELLDDELSVSL 292 +E + + + VST+ E +G+T+ EA AC+ P + +V L + + + L Sbjct: 252 QEKIMWM----QRAWIIVSTSMIEGWGITITEAAACKIPAIAYNVPGLRDSVKHMETGIL 307 Query: 293 YASGREEECAERVAWLXXXXGLRARLKTLGEQKARKTYSIEEVGKAYMALLEQF 346 G E+ A+ +AWL LR +L A +++S + ++ +LE Sbjct: 308 VEPGNIEQLAKAIAWLLTDNSLRNKLSENAYNYA-QSFSWDNTAITFLNILEDI 360 >ref|NP_275316.1| LPS biosynthesis RfbU related protein [Methanothermobacter thermautotrophicus] pir||C69098 probable hexosyltransferase (EC 2.4.1.-) MTH173 - Methanobacterium thermoautotrophicum (strain Delta H) gb|AAB84679.1| LPS biosynthesis RfbU related protein [Methanothermobacter thermautotrophicus str. Delta H] Length = 382 Score = 71.2 bits (173), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 75/306 (24%), Positives = 134/306 (43%), Gaps = 39/306 (12%) Query: 64 YIEAHDFDVIITIDTYELYEALGPAEQKKVI--------IHEVHTTYEEPLRKLAESKDI 115 ++ HD+D+I + Y L PA I IH+V + + + + +++ I Sbjct: 88 WVMTHDYDII----DAQTYAPLLPAFLASRIHGTPMVATIHDVSSAHGDQWLQSSKTATI 143 Query: 116 L-------PFNYVITPSDYMKEMLDQI--GIPDAYHI-NNCLDTELFKYEAVSGKRPPTI 165 L P++ VIT S L ++ PD HI N +D EL ++V+ I Sbjct: 144 LERVLMRLPYDGVITVSRSTASALTELHGRNPDGIHIIPNGVDPELI--DSVTPATGNYI 201 Query: 166 LWVGKLDQHKNWESFMNIAGRLNAQFPDLHYLLVGGYTAPDEITSKLQARVKALELRHFE 225 ++VG+L HK+ + + + +L FPDL ++G ++L+A V +R Sbjct: 202 IFVGRLAPHKHVDHLIEVFSKLVIDFPDLRLEIIGDGVE----RARLKAMVDECGIRD-- 255 Query: 226 WLPKVDYEEMNHYYSAVAESGG--VYVSTTRNESFGMTVLEAMACRCPVVVPDVGALPEL 283 V + Y ++ G V V + E FGM + EA AC P V G + E+ Sbjct: 256 ---SVTFHHNLSYPEVISRIRGARVLVLPSTREGFGMVLAEAGACGVPAVAYRSGGVVEV 312 Query: 284 LDDELSVSLYASGREEECAERVAWLXXXXGLRARLKTLGEQKARKTY----SIEEVGKAY 339 +DD + L +E +++ L LR R+ + G +K + + ++EV + Y Sbjct: 313 IDDGENGFLVEPCDKEALHDKIKLLISDDELRDRMGSQGRKKVEEEFIWDRVVDEVERTY 372 Query: 340 MALLEQ 345 ++ + Sbjct: 373 SFIIAR 378 >gb|EAA93992.1| unknown [environmental sequence] Length = 238 Score = 70.9 bits (172), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 57/224 (25%), Positives = 102/224 (45%), Gaps = 9/224 (4%) Query: 121 VITPS-DYMKEMLDQIGI-PDAYH-INNCLDTELFKYEAVSGKRPPTILWVGKLDQHKNW 177 + TPS D +++D + PD + I N LDT+ F+ + K+ IL VG+ ++ K Sbjct: 12 ITTPSQDLKNQIIDLFNLRPDKINVIPNILDTKHFRPIEIRKKKKFNILHVGRFERPKGV 71 Query: 178 ESFMNIAGRLNAQFPDLHYLLVGGYTAPD-EITSKLQARVKALELRHFEWLPKVDYEEMN 236 E+ + + +F D++ + +G P I L + F+ V+Y + Sbjct: 72 ETLIKAFIEVAKEFNDINLINIGQPRGPSFNICQHLLKENNLTDRVTFKGF--VNYNSLP 129 Query: 237 HYYSAVAESGGVYVSTTRNESFGMTVLEAMACRCPVVVPDVGALPELLDDELSVSLYASG 296 YYS S V + ESF TV + MAC PV+ +G +P+ L++ ++ L+ G Sbjct: 130 EYYSI---SDLVVAPSEIYESFSYTVAQGMACGRPVIASKIGGIPQTLNNGIAGLLFNPG 186 Query: 297 REEECAERVAWLXXXXGLRARLKTLGEQKARKTYSIEEVGKAYM 340 + E++ + RL + A +SI+ + K Y+ Sbjct: 187 DVNDLTEKIISIYNSRDHGDRLGKKARKFAVNQFSIDVLSKRYL 230 >gb|EAJ81041.1| unknown [environmental sequence] Length = 270 Score = 69.7 bits (169), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 61/239 (25%), Positives = 105/239 (43%), Gaps = 10/239 (4%) Query: 109 LAESKDILPFNYV---ITPSDYMKEMLDQIGIPDAYHIN---NCLDTELFKYEAVSGKRP 162 A S + FN+V PS +K L ++ ++ I N LD E F + Sbjct: 29 FAASSERKCFNWVGHITAPSKDLKRQLIELFNINSEKIKVIPNILDAEHFHPMKLVASNY 88 Query: 163 PTILWVGKLDQHKNWESFMNIAGRLNAQFPDLHYLLVGGYTAPDEITSKLQARVKALELR 222 IL VG+ ++ K E+ + +L ++ DL +G P K + + L R Sbjct: 89 FNILHVGRFERAKGIETLLETFIQLAKKYSDLFLTCIGNPRGPSFNKYKNKLMEEGLNER 148 Query: 223 HFEWLPKVDYEEMNHYYSAVAESGGVYVSTTRNESFGMTVLEAMACRCPVVVPDVGALPE 282 + + Y+E+ YY+ + V V + ESF TV + MAC+ PV+ ++G +PE Sbjct: 149 VI-FKGFIAYDELPVYYN---QCDLVVVPSEIYESFSYTVAQGMACKKPVIASNIGGIPE 204 Query: 283 LLDDELSVSLYASGREEECAERVAWLXXXXGLRARLKTLGEQKARKTYSIEEVGKAYMA 341 L+D + L+ G E+ +++ +L R + YSIE +G Y++ Sbjct: 205 TLNDGKAGILFDPGNVEDLNDKIEFLYLNDSKRKYYAEKAREHVVNNYSIEILGPKYLS 263 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.321 0.137 0.411 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 531,527,967 Number of extensions: 21955148 Number of successful extensions: 52176 Number of sequences better than 1.0e-05: 68 Number of HSP's gapped: 52489 Number of HSP's successfully gapped: 68 Length of query: 354 Length of database: 757,237,578 Length adjustment: 127 Effective length of query: 227 Effective length of database: 412,420,005 Effective search space: 93619341135 Effective search space used: 93619341135 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 126 (53.1 bits)