BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0373.0002.p
         (83 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P31835|CDG2_PAEMA Cyclomaltodextrin glucanotransferase precur...   136   2e-31
sp|P04830|CDG1_PAEMA Cyclomaltodextrin glucanotransferase precur...   129   2e-29
gb|AAC04359.1| alpha-cyclodextrin glucanotransferase [Paenibacil...   129   2e-29
gb|AAA22298.1| cyclodextrin glucanotransferase                        129   3e-29
sp|P26827|CDGT_THETU Cyclomaltodextrin glucanotransferase precur...   127   6e-29

>sp|P31835|CDG2_PAEMA Cyclomaltodextrin glucanotransferase precursor
           (Cyclodextrin-glycosyltransferase) (CGTase)
 pir||ALBSXR cyclomaltodextrin glucanotransferase (EC 2.4.1.19) precursor
           [validated] - Bacillus macerans
          Length = 713

 Score =  136 bits (342), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 62/83 (74%), Positives = 71/83 (85%)

Query: 1   VYLVGNVAELGAWSTSDAIGPMYNVVEETYPTWYYDVSVPAGTPLQFKLIKSNGTTVTWE 60
           VYL GNVAELG W+ ++AIGPMYN VE +YPTWY+DVSVPA T LQFK IK NG+TVTWE
Sbjct: 631 VYLTGNVAELGNWTAANAIGPMYNQVEASYPTWYFDVSVPANTALQFKFIKVNGSTVTWE 690

Query: 61  GGSNHTYTSPTSGVGMVAVDWQN 83
           GG+NHT+TSP+SGV  V VDWQN
Sbjct: 691 GGNNHTFTSPSSGVATVTVDWQN 713


>sp|P04830|CDG1_PAEMA Cyclomaltodextrin glucanotransferase precursor
           (Cyclodextrin-glycosyltransferase) (CGTase)
 pir||ALBSGR cyclomaltodextrin glucanotransferase (EC 2.4.1.19) precursor -
           Bacillus macerans
 emb|CAA41773.1| cyclomaltodextrin glucanotransferase [Paenibacillus macerans]
          Length = 714

 Score =  129 bits (324), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 61/83 (73%), Positives = 65/83 (78%)

Query: 1   VYLVGNVAELGAWSTSDAIGPMYNVVEETYPTWYYDVSVPAGTPLQFKLIKSNGTTVTWE 60
           VYLVGN AELG+W  + AIGPMYN V   YP+WYYDVSVPAGT L FK IK  G TVTWE
Sbjct: 632 VYLVGNAAELGSWDPNKAIGPMYNQVIAKYPSWYYDVSVPAGTKLDFKFIKKGGGTVTWE 691

Query: 61  GGSNHTYTSPTSGVGMVAVDWQN 83
           GG NHTYT+P SGVG V VDWQN
Sbjct: 692 GGGNHTYTTPASGVGTVTVDWQN 714


>gb|AAC04359.1| alpha-cyclodextrin glucanotransferase [Paenibacillus macerans]
          Length = 714

 Score =  129 bits (324), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 61/83 (73%), Positives = 65/83 (78%)

Query: 1   VYLVGNVAELGAWSTSDAIGPMYNVVEETYPTWYYDVSVPAGTPLQFKLIKSNGTTVTWE 60
           VYLVGN AELG+W  + AIGPMYN V   YP+WYYDVSVPAGT L FK IK  G TVTWE
Sbjct: 632 VYLVGNAAELGSWDPNKAIGPMYNQVIAKYPSWYYDVSVPAGTKLDFKFIKKGGGTVTWE 691

Query: 61  GGSNHTYTSPTSGVGMVAVDWQN 83
           GG NHTYT+P SGVG V VDWQN
Sbjct: 692 GGGNHTYTTPASGVGTVTVDWQN 714


>gb|AAA22298.1| cyclodextrin glucanotransferase
          Length = 714

 Score =  129 bits (323), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 61/83 (73%), Positives = 64/83 (77%)

Query: 1   VYLVGNVAELGAWSTSDAIGPMYNVVEETYPTWYYDVSVPAGTPLQFKLIKSNGTTVTWE 60
           VYLVGN AELG W  + AIGPMYN V   YP+WYYDVSVPAGT L FK IK  G TVTWE
Sbjct: 632 VYLVGNAAELGTWDPNKAIGPMYNQVIAKYPSWYYDVSVPAGTKLDFKFIKKGGGTVTWE 691

Query: 61  GGSNHTYTSPTSGVGMVAVDWQN 83
           GG NHTYT+P SGVG V VDWQN
Sbjct: 692 GGGNHTYTTPASGVGTVTVDWQN 714


>sp|P26827|CDGT_THETU Cyclomaltodextrin glucanotransferase precursor
           (Cyclodextrin-glycosyltransferase) (CGTase)
 pir||S63598 cyclomaltodextrin glucanotransferase (EC 2.4.1.19) precursor
           [validated] - Thermoanaerobacterium thermosulfurigenes
           (strain EM1)
 gb|AAB00845.1| alpha-cyclodextrin glycosyltransferase [Thermoanaerobacterium
           thermosulfurigenes]
          Length = 710

 Score =  127 bits (320), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 60/82 (73%), Positives = 65/82 (79%)

Query: 1   VYLVGNVAELGAWSTSDAIGPMYNVVEETYPTWYYDVSVPAGTPLQFKLIKSNGTTVTWE 60
           VYL GNVAELG W TS AIGPM+N V   YPTWYYDVSVPAGT +QFK IK NG T+TWE
Sbjct: 628 VYLTGNVAELGNWDTSKAIGPMFNQVVYQYPTWYYDVSVPAGTTIQFKFIKKNGNTITWE 687

Query: 61  GGSNHTYTSPTSGVGMVAVDWQ 82
           GGSNHTYT P+S  G V V+WQ
Sbjct: 688 GGSNHTYTVPSSSTGTVIVNWQ 709


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.312    0.130    0.415 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 144,590,039
Number of extensions: 5379204
Number of successful extensions: 8922
Number of sequences better than 1.0e-05: 90
Number of HSP's gapped: 8882
Number of HSP's successfully gapped: 90
Length of query: 83
Length of database: 757,237,578
Length adjustment: 52
Effective length of query: 31
Effective length of database: 616,052,430
Effective search space: 19097625330
Effective search space used: 19097625330
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 120 (50.8 bits)