BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0370.0052.p (205 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_977499.1| transcriptional regulator, TetR family [Bacillu... 189 3e-47 ref|NP_830863.1| Transcriptional regulator, TetR family [Bacillu... 188 8e-47 ref|NP_843573.1| transcriptional regulator, TetR family [Bacillu... 186 4e-46 ref|NP_654991.1| tetR, Bacterial regulatory proteins, tetR famil... 185 4e-46 ref|NP_388896.1| alternate gene name: yixD~similar to transcript... 172 5e-42 >ref|NP_977499.1| transcriptional regulator, TetR family [Bacillus cereus ATCC 10987] gb|AAS40107.1| transcriptional regulator, TetR family [Bacillus cereus ATCC 10987] Length = 190 Score = 189 bits (481), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 90/176 (51%), Positives = 126/176 (71%) Query: 29 TKSFSLFGYKATTMDQVAKIANVGKGTIYTFFTNKEQLFDEILRDVIMDMKLIAEREIKR 88 TKSFS FGYKATTMDQVAK+ANVGKGTIYTFF NKE+LF EI+ ++I +MK +AE I+ Sbjct: 14 TKSFSAFGYKATTMDQVAKLANVGKGTIYTFFKNKEELFGEIISNLITEMKQVAENAIRS 73 Query: 89 ERSFFDNLHHVLDALLEFRSEHELFIKLSQESRDFGTPQANEGLDKIENVVLEYLEREVE 148 E SFF+N+H L ++LEFR EH+L IKL QE RD GT + E + +++ ++ ++ ++ Sbjct: 74 EVSFFENVHRALYSILEFRKEHQLMIKLIQEERDMGTKEVQEVMQQVDVEIVSVIQSYLK 133 Query: 149 HAITQGEVKPCEPKIVSLVMFRLYIVLTAELSSVHVPLTKEQIKSYFHLFLAEGLA 204 AI +GE+ C+P+I + +M RLY+ L + H PL KE+I F L+L +GL+ Sbjct: 134 IAIDKGEISKCDPEITAFIMLRLYVSLIFDWEKNHEPLEKEKIAELFELYLLKGLS 189 >ref|NP_830863.1| Transcriptional regulator, TetR family [Bacillus cereus ATCC 14579] gb|AAP08064.1| Transcriptional regulator, TetR family [Bacillus cereus ATCC 14579] Length = 190 Score = 188 bits (477), Expect = 8e-47, Method: Compositional matrix adjust. Identities = 89/176 (50%), Positives = 126/176 (71%) Query: 29 TKSFSLFGYKATTMDQVAKIANVGKGTIYTFFTNKEQLFDEILRDVIMDMKLIAEREIKR 88 TKSFS FGYKATTMDQVAK+ANVGKGTIYTFF NKE+LF EI+ ++I +MK +AE I+ Sbjct: 14 TKSFSAFGYKATTMDQVAKLANVGKGTIYTFFKNKEELFGEIISNLITEMKQVAESAIRS 73 Query: 89 ERSFFDNLHHVLDALLEFRSEHELFIKLSQESRDFGTPQANEGLDKIENVVLEYLEREVE 148 + SFF+N+H L ++LEFR EH+L IKL QE RD GT + E + +++ ++ ++ ++ Sbjct: 74 DVSFFENVHRALYSILEFRKEHQLMIKLIQEERDMGTKEVQEVMQQVDVEIVSVIQSYLK 133 Query: 149 HAITQGEVKPCEPKIVSLVMFRLYIVLTAELSSVHVPLTKEQIKSYFHLFLAEGLA 204 AI +GE+ C+P+I + +M RLY+ L + H PL KE+I F L+L +GL+ Sbjct: 134 IAIEKGEISKCDPEITAFIMLRLYVSLIFDWEKNHEPLEKEKIAELFELYLLKGLS 189 >ref|NP_843573.1| transcriptional regulator, TetR family [Bacillus anthracis str. Ames] gb|AAP25059.1| transcriptional regulator, TetR family [Bacillus anthracis str. Ames] Length = 190 Score = 186 bits (471), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 88/176 (50%), Positives = 125/176 (71%) Query: 29 TKSFSLFGYKATTMDQVAKIANVGKGTIYTFFTNKEQLFDEILRDVIMDMKLIAEREIKR 88 TK FS FGYKATTMDQVAK+ANVGKGTIYTFF NKE+LF EI+ ++I +MK +AE I+ Sbjct: 14 TKYFSAFGYKATTMDQVAKLANVGKGTIYTFFKNKEELFGEIISNLITEMKQVAENAIRS 73 Query: 89 ERSFFDNLHHVLDALLEFRSEHELFIKLSQESRDFGTPQANEGLDKIENVVLEYLEREVE 148 + SFF+N+H L ++LEFR EH+L IKL QE RD GT + E + +++ ++ ++ ++ Sbjct: 74 DVSFFENVHRALYSILEFRKEHQLMIKLIQEERDMGTKEVQEVMQQVDVEIVSVIQSYLK 133 Query: 149 HAITQGEVKPCEPKIVSLVMFRLYIVLTAELSSVHVPLTKEQIKSYFHLFLAEGLA 204 AI +GE+ C+P+I + +M RLY+ L + H PL KE+I F L+L +GL+ Sbjct: 134 IAIDKGEISKCDPEITAFIMLRLYVSLIFDWEKNHEPLEKEKIAELFELYLLKGLS 189 >ref|NP_654991.1| tetR, Bacterial regulatory proteins, tetR family [Bacillus anthracis A2012] Length = 197 Score = 185 bits (470), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 88/176 (50%), Positives = 125/176 (71%) Query: 29 TKSFSLFGYKATTMDQVAKIANVGKGTIYTFFTNKEQLFDEILRDVIMDMKLIAEREIKR 88 TK FS FGYKATTMDQVAK+ANVGKGTIYTFF NKE+LF EI+ ++I +MK +AE I+ Sbjct: 21 TKYFSAFGYKATTMDQVAKLANVGKGTIYTFFKNKEELFGEIISNLITEMKQVAENAIRS 80 Query: 89 ERSFFDNLHHVLDALLEFRSEHELFIKLSQESRDFGTPQANEGLDKIENVVLEYLEREVE 148 + SFF+N+H L ++LEFR EH+L IKL QE RD GT + E + +++ ++ ++ ++ Sbjct: 81 DVSFFENVHRALYSILEFRKEHQLMIKLIQEERDMGTKEVQEVMQQVDVEIVSVIQSYLK 140 Query: 149 HAITQGEVKPCEPKIVSLVMFRLYIVLTAELSSVHVPLTKEQIKSYFHLFLAEGLA 204 AI +GE+ C+P+I + +M RLY+ L + H PL KE+I F L+L +GL+ Sbjct: 141 IAIDKGEISKCDPEITAFIMLRLYVSLIFDWEKNHEPLEKEKIAELFELYLLKGLS 196 >ref|NP_388896.1| alternate gene name: yixD~similar to transcriptional regulator (TetR/AcrR family) [Bacillus subtilis] sp|P32398|YHGD_BACSU Putative HTH-type transcriptional regulator yhgD pir||E47045 transcription regulator TetR/AcrR family homolog yhgD - Bacillus subtilis gb|AAA22520.1| ORFA emb|CAA74521.1| hypothetical transcriptional regulator [Bacillus subtilis] emb|CAB12855.1| yhgD [Bacillus subtilis subsp. subtilis str. 168] Length = 191 Score = 172 bits (435), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 83/176 (47%), Positives = 117/176 (66%) Query: 29 TKSFSLFGYKATTMDQVAKIANVGKGTIYTFFTNKEQLFDEILRDVIMDMKLIAEREIKR 88 TKSF+ FGYKATTMD VAK+ANVGKGTIYTFF NKE+LFDEI ++ +MK A+ ++ Sbjct: 14 TKSFTQFGYKATTMDLVAKLANVGKGTIYTFFKNKEELFDEIFTTLLKEMKQKADEAMEP 73 Query: 89 ERSFFDNLHHVLDALLEFRSEHELFIKLSQESRDFGTPQANEGLDKIENVVLEYLEREVE 148 F +N+H L A+LEFR H+L IK+ QE+ + GT E + K+E +L Y++ ++E Sbjct: 74 SLPFHENVHRALFAILEFRKTHQLTIKIFQENAEIGTMAVQEVIQKMERSILSYIKSKIE 133 Query: 149 HAITQGEVKPCEPKIVSLVMFRLYIVLTAELSSVHVPLTKEQIKSYFHLFLAEGLA 204 I G +KPC+P++ + VM +LYI L + H PL KE I L++ +GL+ Sbjct: 134 DGIKSGAIKPCDPELTAFVMLKLYIALIFDWEKQHPPLDKETIAGLLELYVVKGLS 189 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.322 0.138 0.388 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 253,605,202 Number of extensions: 9296452 Number of successful extensions: 27532 Number of sequences better than 1.0e-05: 18 Number of HSP's gapped: 27574 Number of HSP's successfully gapped: 18 Length of query: 205 Length of database: 757,237,578 Length adjustment: 120 Effective length of query: 85 Effective length of database: 431,425,698 Effective search space: 36671184330 Effective search space used: 36671184330 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 123 (52.0 bits)