BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0370.0041.p (195 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_691149.1| RNA polymerase ECF-type sigma factor [Oceanobac... 72 6e-12 gb|EAH96247.1| unknown [environmental sequence] 69 4e-11 gb|EAD34027.1| unknown [environmental sequence] 69 7e-11 ref|NP_388054.1| RNA polymerase ECF-type sigma factor (sigma-W) ... 67 2e-10 gb|EAJ16631.1| unknown [environmental sequence] 67 3e-10 >ref|NP_691149.1| RNA polymerase ECF-type sigma factor [Oceanobacillus iheyensis HTE831] dbj|BAC12184.1| RNA polymerase ECF-type sigma factor (sigma-W) [Oceanobacillus iheyensis HTE831] Length = 187 Score = 72.0 bits (175), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 50/186 (26%), Positives = 84/186 (45%), Gaps = 20/186 (10%) Query: 5 WIEQAVARVQAGEVEPYAQIVEAYQKPIHRYCSRLLGSRSEAEDAVQDILVKAYLNIAAY 64 +I + + +V+ G+ +A++V YQ I ++C R+LG++ EAED Q+ ++AY+NI ++ Sbjct: 4 FIIEKIKQVKKGDQSAFAEVVSFYQNKIFQHCYRMLGNKHEAEDIAQEAFIRAYINIDSF 63 Query: 65 RSVASFSSWLYKIA---------------YHHCXXXXXXXXXXXXXXXXXXXXXXXXXXX 109 FS+WLY+IA Y Sbjct: 64 DEKRKFSTWLYRIATNLTIDRIRKRKPDYYLDAEVKGTEGLDMYSQLASTERLPGEEVES 123 Query: 110 XXMDRNIFSEPLAKALSRLSTEERNLLVLRIFEEQSFPEIAGILDKNMEAVKKKYRRTLM 169 + R I E +S+L + R++++LR EE S EI+ ILD + VK + R Sbjct: 124 RELQRYIHHE-----ISQLPAKYRSIIMLRYLEEFSLQEISEILDIPLGTVKTRIHRGRE 178 Query: 170 KLAKMM 175 L K + Sbjct: 179 ALRKRL 184 >gb|EAH96247.1| unknown [environmental sequence] Length = 189 Score = 69.3 bits (168), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 44/176 (25%), Positives = 79/176 (44%), Gaps = 7/176 (3%) Query: 7 EQAVARVQAGEVEPYAQIVEAYQKPIHRYCSRLLGSRSEAEDAVQDILVKAYLNIAAYRS 66 E+ ++R Q GE + Y ++V Y+ + + R + + AED VQD LVK Y + YR+ Sbjct: 10 EELISRFQNGEEQAYIELVNRYRDRLMSFIYRFVNDQVAAEDIVQDTLVKLYTHKDYYRN 69 Query: 67 VASFSSWLYKIAYHHCXXXXXXXXXXXXXXXXXXXXXX-------XXXXXXXMDRNIFSE 119 +A FS+W+Y IA + + E Sbjct: 70 IAKFSTWIYTIAGNLAKTELRKNKRRKVTNLSDMGSDDWEFEIPAKEDTAEEVHSQFDGE 129 Query: 120 PLAKALSRLSTEERNLLVLRIFEEQSFPEIAGILDKNMEAVKKKYRRTLMKLAKMM 175 + KA+ L R +++LR +E S+ E++ I++ + VK + R ++L +M+ Sbjct: 130 QINKAIQTLPDHFREVIILRDIQELSYEEVSNIVEVPLGTVKSRINRARLQLQEML 185 >gb|EAD34027.1| unknown [environmental sequence] Length = 194 Score = 68.6 bits (166), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 45/173 (26%), Positives = 79/173 (45%), Gaps = 8/173 (4%) Query: 7 EQAVARVQAGEVEPYAQIVEAYQKPIHRYCSRLLGSRSEAEDAVQDILVKAYLNIAAYRS 66 EQ + R Q G+ + ++V Y+ +H + LG +AED VQD ++K Y Y+ Sbjct: 13 EQLIKRFQLGDELAFIELVNRYRDKLHNFIYHFLGDIEQAEDVVQDTMIKLYEKKHYYKQ 72 Query: 67 VASFSSWLYKIAYH----HCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMDRNIFSEPLA 122 VA FS+W+Y IA + + +NI S+ + Sbjct: 73 VAKFSTWIYTIARNLANTELRKRKRRKTFSISELSKNKNNFDLKDDQNEIGQNIESKFIL 132 Query: 123 K----ALSRLSTEERNLLVLRIFEEQSFPEIAGILDKNMEAVKKKYRRTLMKL 171 K A++ LS R +++LR ++ S+ EI+ I+D + +K + R ++L Sbjct: 133 KKINHAINNLSKSYRTVIILRDIQKLSYDEISKIVDVPIGTIKSRINRARLQL 185 >ref|NP_388054.1| RNA polymerase ECF-type sigma factor (sigma-W) [Bacillus subtilis] sp|Q45585|SIGW_BACSU RNA polymerase sigma factor sigW pir||H69706 RNA polymerase ECF-type sigma factor sigW - Bacillus subtilis dbj|BAA19507.1| YbbL [Bacillus subtilis] emb|CAB11949.1| RNA polymerase ECF(extracytoplasmic function)-type sigma factor (sigma-W) [Bacillus subtilis subsp. subtilis str. 168] Length = 187 Score = 67.0 bits (162), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 28/73 (38%), Positives = 50/73 (68%) Query: 6 IEQAVARVQAGEVEPYAQIVEAYQKPIHRYCSRLLGSRSEAEDAVQDILVKAYLNIAAYR 65 I++ + +V+ G+ + +A IV+ Y+ I++ C R+LG+ EAED Q+ ++AY+NI ++ Sbjct: 5 IKKRIKQVKKGDQDAFADIVDIYKDKIYQLCYRMLGNVHEAEDIAQEAFIRAYVNIDSFD 64 Query: 66 SVASFSSWLYKIA 78 FS+WLY+IA Sbjct: 65 INRKFSTWLYRIA 77 >gb|EAJ16631.1| unknown [environmental sequence] Length = 185 Score = 66.6 bits (161), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 50/160 (31%), Positives = 70/160 (43%), Gaps = 9/160 (5%) Query: 20 PYAQIVEAYQKPIHRY-------CSRLLGSRSEAEDAVQDILVKAYLNIAAYRSVASFSS 72 PY + AY+ HRY C R L S EAE+ V D L+ + I + A F + Sbjct: 18 PY--VTTAYETIFHRYHKKLLQICFRYLKSAEEAEETVNDTLLIVFNKINQFEERAKFRT 75 Query: 73 WLYKIAYHHCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMDRNIFSEPLAKALSRLSTEE 132 W+YKIA++ D + L K L LS EE Sbjct: 76 WVYKIAHNQALTRLRKKQAEHVELNEALPEIEKHEEQSQQDHTNEQQQLNKLLDLLSLEE 135 Query: 133 RNLLVLRIFEEQSFPEIAGILDKNMEAVKKKYRRTLMKLA 172 R+++V R+ F EI+ ILD + AVK +Y+R L K+A Sbjct: 136 RSIVVFRMTGNLEFSEISQILDVKLSAVKMRYKRALEKMA 175 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.319 0.132 0.379 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 221,611,271 Number of extensions: 6630298 Number of successful extensions: 19552 Number of sequences better than 1.0e-05: 62 Number of HSP's gapped: 19593 Number of HSP's successfully gapped: 62 Length of query: 195 Length of database: 757,237,578 Length adjustment: 119 Effective length of query: 76 Effective length of database: 434,140,797 Effective search space: 32994700572 Effective search space used: 32994700572 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 122 (51.6 bits)