BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0370.0037.p (327 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_693955.1| hypothetical protein OB3033 [Oceanobacillus ihe... 286 5e-76 ref|NP_243074.1| BH2208~unknown conserved protein [Bacillus halo... 281 1e-74 ref|NP_389224.1| similar to hypothetical proteins [Bacillus subt... 274 2e-72 ref|NP_654754.1| Ku78, Ku70 and Ku80 are 70kDa and 80kDa subunit... 195 1e-48 ref|NP_977223.1| conserved hypothetical protein [Bacillus cereus... 194 3e-48 >ref|NP_693955.1| hypothetical protein OB3033 [Oceanobacillus iheyensis HTE831] dbj|BAC14989.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831] Length = 280 Score = 286 bits (732), Expect = 5e-76, Method: Compositional matrix adjust. Identities = 141/255 (55%), Positives = 181/255 (70%), Gaps = 3/255 (1%) Query: 8 MHTVWKGAISFGLVHVPVKMFSATEDKDISLRYIHKECGSPLSYVRKCPVCDKEVAWEEI 67 MHT+WKG ISFGLV++PVKM +ATE+KDI LR +HK+C +P+ Y + CP C+++V+ ++I Sbjct: 1 MHTMWKGTISFGLVNIPVKMHAATENKDIRLRQLHKKCKTPIKYEKVCPNCEEDVSNDDI 60 Query: 68 GKGYEYDKGKFVLFEKEELEQLT-EQSTKNIAILDFVDLTEIDPIYFQKTYYLSPDQAGA 126 K YEY K KFV+ + EELE L EQ K + I+DFV L +IDPIYF+K+YYLSP++ G+ Sbjct: 61 VKAYEYAKNKFVVLDDEELEALKKEQEDKAVEIIDFVQLKDIDPIYFEKSYYLSPNEGGS 120 Query: 127 NAYRLLMEAMRQTGKIGIAKISIRSKSSLAAIRVLADCLAIETIFYPDEVRPVSQVPGLP 186 AY LL EA+ +GKIGIAK+ IRSK LA IRV + +ETI YPDEVR VS VP +P Sbjct: 121 KAYALLREALLDSGKIGIAKMMIRSKEQLAVIRVYESAIVVETIHYPDEVRAVSDVPNVP 180 Query: 187 EPGIVNDKELDMAKLLISQLSTPFEPGKYTDDYRQRMLDLITHKIAGEEFHIA--PARQE 244 E V KELD AKLLI QL+T FEP KY D+YR +L+LI K EE + P Sbjct: 181 EQADVGKKELDTAKLLIDQLTTEFEPEKYQDNYRTALLELIEAKKNNEEIEVGGEPKSTP 240 Query: 245 SNVIDLMAALQASIE 259 NV +LM ALQ S++ Sbjct: 241 DNVTNLMDALQESLD 255 >ref|NP_243074.1| BH2208~unknown conserved protein [Bacillus halodurans] pir||H83925 hypothetical protein BH2208 [imported] - Bacillus halodurans (strain C-125) dbj|BAB05927.1| BH2208~unknown conserved protein [Bacillus halodurans] Length = 280 Score = 281 bits (719), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 138/257 (53%), Positives = 183/257 (71%), Gaps = 3/257 (1%) Query: 6 IIMHTVWKGAISFGLVHVPVKMFSATEDKDISLRYIHKECGSPLSYVRKCPVCDKEVAWE 65 + +HT+WKG ISFGLV++P+K+ +ATE+KD+ LR +HKEC +P++Y++ CP CD EV Sbjct: 1 MTIHTMWKGTISFGLVNIPIKLHAATENKDVRLRQLHKECKTPINYLKVCPNCDAEVEPN 60 Query: 66 EIGKGYEYDKGKFVLFEKEELEQLT-EQSTKNIAILDFVDLTEIDPIYFQKTYYLSPDQA 124 +I K YEY K KFV ++EEL L EQ K + I+DFV L EIDPIYF K+YY+SP Sbjct: 61 DIVKAYEYAKNKFVELDEEELASLKKEQEDKAVEIIDFVKLQEIDPIYFDKSYYMSPGDG 120 Query: 125 GANAYRLLMEAMRQTGKIGIAKISIRSKSSLAAIRVLADCLAIETIFYPDEVRPVSQVPG 184 G AY LL EA+ ++ KIG+AKI IR+K LA IRV + L +ETI +PDEVR V QVP Sbjct: 121 GGKAYTLLREALAESEKIGVAKIIIRAKEHLAVIRVYKNTLLMETIHFPDEVRAVDQVPN 180 Query: 185 LPEPGIVNDKELDMAKLLISQLSTPFEPGKYTDDYRQRMLDLITHKIAGEEFHIAPARQ- 243 +PE V KE+D A LLI QL+T F+P KY DDYRQ ++++I +K AG++ A ++ Sbjct: 181 VPEKVDVTKKEVDTALLLIDQLTTTFDPDKYEDDYRQALMEMIENKKAGKQTVTAKEKEP 240 Query: 244 -ESNVIDLMAALQASIE 259 SNV DLM ALQASI+ Sbjct: 241 AASNVTDLMEALQASID 257 >ref|NP_389224.1| similar to hypothetical proteins [Bacillus subtilis] pir||H69860 conserved hypothetical protein ykoV - Bacillus subtilis emb|CAB13198.1| ykoV [Bacillus subtilis subsp. subtilis str. 168] Length = 311 Score = 274 bits (701), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 132/261 (50%), Positives = 182/261 (69%), Gaps = 3/261 (1%) Query: 6 IIMHTVWKGAISFGLVHVPVKMFSATEDKDISLRYIHKECGSPLSYVRKCPVCDKEVAWE 65 I MHT+WKG+ISFGLV++P+K+++ATEDKDI LR +HKE +P+ Y + C C+K ++ + Sbjct: 16 IDMHTMWKGSISFGLVNIPIKLYAATEDKDIKLRSLHKEDHAPIKYEKVCTNCEKTLSPD 75 Query: 66 EIGKGYEYDKGKFVLFEKEELEQLT-EQSTKNIAILDFVDLTEIDPIYFQKTYYLSPDQA 124 EI KGYEY KGK+V+ E+L+ L E K + I+DFV L EIDPIYF ++Y++ P Sbjct: 76 EIVKGYEYVKGKYVVLTDEDLKSLKQEHEEKAVEIVDFVQLQEIDPIYFNRSYFVGPGDN 135 Query: 125 GANAYRLLMEAMRQTGKIGIAKISIRSKSSLAAIRVLADCLAIETIFYPDEVRPVSQVPG 184 G AY LL EA+R TGKIGIA ++IRSK LA +RV +C+ +E+I YPDEVR +QVPG Sbjct: 136 GTKAYTLLREALRSTGKIGIANMTIRSKQQLAILRVYENCIVMESIHYPDEVRSAAQVPG 195 Query: 185 LPEPGIVNDKELDMAKLLISQLSTPFEPGKYTDDYRQRMLDLITHKIAGEEFHIAPARQ- 243 +P+ VNDKEL A LI +L+ FEP KY D YRQ +L + K+ +E + P + Sbjct: 196 VPDQSNVNDKELQTAITLIDELTAKFEPEKYEDTYRQALLQRVNDKLENKETAVTPDKAP 255 Query: 244 -ESNVIDLMAALQASIEAVQH 263 +VIDL++ALQASI+ + Sbjct: 256 PREDVIDLVSALQASIDRTRR 276 >ref|NP_654754.1| Ku78, Ku70 and Ku80 are 70kDa and 80kDa subunits of the Lupus Ku autoantigen [Bacillus anthracis A2012] ref|NP_843326.1| conserved hypothetical protein [Bacillus anthracis str. Ames] gb|AAP24812.1| conserved hypothetical protein [Bacillus anthracis str. Ames] Length = 270 Score = 195 bits (495), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 103/261 (39%), Positives = 163/261 (62%), Gaps = 9/261 (3%) Query: 8 MHTVWKGAISFGLVHVPVKMFSATEDKDISLRYIHKECGSPLSYVRKCPVC-DKEVAWEE 66 MHTVWKGA+S GL+++ +K++SA ++ DI +HKEC +P+ Y + P C D+EV ++ Sbjct: 1 MHTVWKGALSLGLLNIGIKLYSAVDENDIKFLSLHKECLTPIKYKKFAPDCTDEEVDDKD 60 Query: 67 IGKGYEYDKGKFVLFEKEELEQLTE-QSTKNIAILDFVDLTEIDPIYFQKTYYLSPDQAG 125 I K YEY K+++ +++EL L + ++I I+ F+ EID + + ++Y++ P Sbjct: 61 IVKAYEYAPHKYIIMDEKELSALQKAHEPRSIRIISFIQNNEIDSVLYDRSYFIGPTPGH 120 Query: 126 ANAYRLLMEAMRQTGKIGIAKISIRSKSSLAAIRVLADCLAIETIFYPDEVRPVSQVPGL 185 +Y LL EA+ +T K+G+ ISIR K LA IR D L ++TI YP+E+R ++ +P L Sbjct: 121 EKSYLLLKEALERTNKLGLIYISIRKKQHLAIIRNFEDGLMLQTIHYPNEIRDITNIPNL 180 Query: 186 P--EPGIVNDKELDMAKLLISQLSTPFEPGKYTDDYRQRMLDLITHKIAGEEF--HIAPA 241 P E + +EL A LI L+ PFE YTD+Y++ + +LI +KI +E I+PA Sbjct: 181 PSNENYPIQKQELTAAINLIHHLTNPFEQELYTDEYKEALTELIENKIEEQEKTETISPA 240 Query: 242 RQESNVIDLMAALQASIEAVQ 262 N+I++M LQASIE + Sbjct: 241 ---PNIINIMETLQASIEQAK 258 >ref|NP_977223.1| conserved hypothetical protein [Bacillus cereus ATCC 10987] gb|AAS39831.1| conserved hypothetical protein [Bacillus cereus ATCC 10987] Length = 270 Score = 194 bits (492), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 102/261 (39%), Positives = 162/261 (62%), Gaps = 9/261 (3%) Query: 8 MHTVWKGAISFGLVHVPVKMFSATEDKDISLRYIHKECGSPLSYVRKCPVC-DKEVAWEE 66 MHTVWKGA+S GL+++ +K++SA E+ DI +HKEC +P+ Y + P C D+++ ++ Sbjct: 1 MHTVWKGALSLGLLNIGIKLYSAVEENDIKFLSLHKECLTPIKYKKFAPDCTDEDIDDKD 60 Query: 67 IGKGYEYDKGKFVLFEKEELEQLTE-QSTKNIAILDFVDLTEIDPIYFQKTYYLSPDQAG 125 I K YEY K+++ +++EL L + ++I I+ FV EID + + ++Y++ P Sbjct: 61 IVKAYEYAPHKYIIMDEKELAALQKAHEPRSIRIISFVQNDEIDSVLYDRSYFIGPTPGH 120 Query: 126 ANAYRLLMEAMRQTGKIGIAKISIRSKSSLAAIRVLADCLAIETIFYPDEVRPVSQVPGL 185 +Y LL EA+ +T K+G+ I+IR K LA IR D L ++TI YP+E+R ++ P L Sbjct: 121 EKSYLLLKEALERTNKLGLIHIAIRKKQHLAIIRNFEDGLMLQTIHYPNEIRDITNTPNL 180 Query: 186 P--EPGIVNDKELDMAKLLISQLSTPFEPGKYTDDYRQRMLDLITHKIAGEEF--HIAPA 241 P E + +EL A LI L+ PFE YTD+Y++ + +LI +KI +E I+PA Sbjct: 181 PSNENYPIQKQELTAAMNLIHHLTNPFEQEMYTDEYKEALTELIENKIEQQEKTETISPA 240 Query: 242 RQESNVIDLMAALQASIEAVQ 262 N+I++M LQASIE + Sbjct: 241 ---PNIINIMETLQASIEQAK 258 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.318 0.135 0.390 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 422,448,110 Number of extensions: 16019752 Number of successful extensions: 37738 Number of sequences better than 1.0e-05: 64 Number of HSP's gapped: 37609 Number of HSP's successfully gapped: 64 Length of query: 327 Length of database: 757,237,578 Length adjustment: 126 Effective length of query: 201 Effective length of database: 415,135,104 Effective search space: 83442155904 Effective search space used: 83442155904 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 126 (53.1 bits)