BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0370.0027.p
         (89 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_691572.1| ABC transporter ATP-binding protein [Oceanobaci...    59   3e-08
ref|NP_976612.1| ABC transporter, ATP-binding protein [Bacillus ...    59   3e-08
ref|NP_842815.1| ABC transporter, ATP-binding protein [Bacillus ...    59   4e-08
ref|NP_830141.1| ABC transporter ATP-binding protein uup [Bacill...    58   8e-08
ref|NP_654193.1| ABC_tran, ABC transporter [Bacillus anthracis A...    55   5e-07

>ref|NP_691572.1| ABC transporter ATP-binding protein [Oceanobacillus iheyensis
           HTE831]
 dbj|BAC12607.1| ABC transporter ATP-binding protein [Oceanobacillus iheyensis
           HTE831]
          Length = 643

 Score = 58.9 bits (141), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 32/76 (42%), Positives = 49/76 (64%)

Query: 11  SYEAEKQAKREERNRQRRISELEENIAVLEEDIARIENEMTRPEVFQDYVALQEHESELK 70
           S++ EKQ + EER R+R+I+ELE+ I   EE IA +E +MT PEV++D+    E   E  
Sbjct: 563 SFKEEKQKQSEERKRKRQIAELEKQIETTEEHIAHLEEQMTLPEVYEDHEKALELTEETN 622

Query: 71  LKKEQLGNLFSEWENL 86
           + K++L +L   W +L
Sbjct: 623 MYKQKLDDLLEHWTSL 638


>ref|NP_976612.1| ABC transporter, ATP-binding protein [Bacillus cereus ATCC 10987]
 gb|AAS39220.1| ABC transporter, ATP-binding protein [Bacillus cereus ATCC 10987]
          Length = 662

 Score = 58.9 bits (141), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 36/81 (44%), Positives = 50/81 (61%), Gaps = 8/81 (9%)

Query: 10  LSYEAEKQAKREERNRQRRISELEENIAVLEEDIARIENEMTRPEVFQDYVALQEHESEL 69
           L+Y  EK+ K+ ER R R+I ELE+NI   EE+IA +E+++  PE++ DY    E  SE+
Sbjct: 584 LNYLEEKERKKLERQRTRKIEELEQNIVQFEEEIATLEDQLCLPEIYADY----EKASEI 639

Query: 70  KLKK----EQLGNLFSEWENL 86
             KK    EQL    +EWE L
Sbjct: 640 TTKKQTLQEQLDACMAEWEEL 660


>ref|NP_842815.1| ABC transporter, ATP-binding protein [Bacillus anthracis str. Ames]
 gb|AAP24301.1| ABC transporter, ATP-binding protein [Bacillus anthracis str. Ames]
          Length = 640

 Score = 58.9 bits (141), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 36/81 (44%), Positives = 50/81 (61%), Gaps = 8/81 (9%)

Query: 10  LSYEAEKQAKREERNRQRRISELEENIAVLEEDIARIENEMTRPEVFQDYVALQEHESEL 69
           L+Y  EK+ K+ ER R R+I ELE+NI   EE+IA +E+++  PE++ DY    E  SE+
Sbjct: 562 LNYLEEKERKKLERQRTRKIEELEQNIVQFEEEIATLEDQLCLPEIYADY----EKASEI 617

Query: 70  KLKK----EQLGNLFSEWENL 86
             KK    EQL    +EWE L
Sbjct: 618 TTKKQTLQEQLDACMAEWEEL 638


>ref|NP_830141.1| ABC transporter ATP-binding protein uup [Bacillus cereus ATCC
           14579]
 gb|AAP07342.1| ABC transporter ATP-binding protein uup [Bacillus cereus ATCC
           14579]
          Length = 644

 Score = 57.8 bits (138), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 40/90 (44%), Positives = 55/90 (61%), Gaps = 11/90 (12%)

Query: 1   VPAAEKGAALSYEAEKQAKREERNRQRRISELEENIAVLEEDIARIENEMTRPEVFQDYV 60
           V A EK   L+Y  EK+ K+ ER R R+I ELE++I  LEE+IA +E+++  PE++ DY 
Sbjct: 560 VVAQEK---LNYLEEKERKKLERQRTRKIEELEQSIVELEEEIATLEDQLCLPEIYADY- 615

Query: 61  ALQEHESELKLKK----EQLGNLFSEWENL 86
              E  SE+  KK    EQL    +EWE L
Sbjct: 616 ---EKASEITTKKQTLQEQLETCMAEWEEL 642


>ref|NP_654193.1| ABC_tran, ABC transporter [Bacillus anthracis A2012]
          Length = 640

 Score = 55.1 bits (131), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/81 (43%), Positives = 48/81 (59%), Gaps = 8/81 (9%)

Query: 10  LSYEAEKQAKREERNRQRRISELEENIAVLEEDIARIENEMTRPEVFQDYVALQEHESEL 69
           L+Y  EK+ K+ ER R R   ELE+NI   EE+IA +E+++  PE++ DY    E  SE+
Sbjct: 562 LNYLEEKERKKLERQRTRXXEELEQNIVQFEEEIATLEDQLCLPEIYADY----EKASEI 617

Query: 70  KLKK----EQLGNLFSEWENL 86
             KK    EQL    +EWE L
Sbjct: 618 TTKKQTLQEQLDACMAEWEEL 638


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.306    0.125    0.325 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 119,434,144
Number of extensions: 4105229
Number of successful extensions: 25621
Number of sequences better than 1.0e-05: 18
Number of HSP's gapped: 25625
Number of HSP's successfully gapped: 18
Length of query: 89
Length of database: 757,237,578
Length adjustment: 58
Effective length of query: 31
Effective length of database: 599,761,836
Effective search space: 18592616916
Effective search space used: 18592616916
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 120 (50.8 bits)