BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0370.0024.p (215 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|EAD54562.1| unknown [environmental sequence] 93 3e-18 ref|NP_866676.1| 5-formyltetrahydrofolate cyclo-ligase [Pirellul... 91 2e-17 ref|NP_214187.1| hypothetical protein [Aquifex aeolicus] >gi|745... 89 7e-17 gb|EAJ93951.1| unknown [environmental sequence] 87 2e-16 gb|EAK44300.1| unknown [environmental sequence] 86 6e-16 >gb|EAD54562.1| unknown [environmental sequence] Length = 188 Score = 93.2 bits (230), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 55/175 (31%), Positives = 89/175 (50%), Gaps = 12/175 (6%) Query: 30 ERASMSARVCSHALDWLRKEKAASLLAYVPFRSELDCRPLIAGAWALGREVLLPRVIAEA 89 E++ + + L+W + A + ++ E D RP+I W+ G+++ +P V+ Sbjct: 21 EKSQAESVMLESLLNWEVFKNAGVIHIFISKPDEPDTRPIIEHCWSSGKKIAVPVVLPNT 80 Query: 90 GTMSLHTVGSWEELAPGAYGILEPLLPEGNGQEREXXXXXXXXXXXGLAFDRQGGRLGYG 149 + + S+++L PG +G EP PE Q + G+AFDR+GGRLG+G Sbjct: 81 FDLFHSEIKSFDDLVPGMHGTHEPS-PER--QTKINLDSFDLVIVPGVAFDRKGGRLGHG 137 Query: 150 KGYYDRMQASLKQESGFALKPPVWIGLAFSQQLVPEVPMDGHDAYMDMLITEEGI 204 KGYYDR L+ F L GL F QL+ +P + HD M+ +++E GI Sbjct: 138 KGYYDRF---LELTKAFRL------GLTFECQLLENIPTELHDVLMNAILSESGI 183 >ref|NP_866676.1| 5-formyltetrahydrofolate cyclo-ligase [Pirellula sp. 1] emb|CAD74215.1| 5-formyltetrahydrofolate cyclo-ligase [Pirellula sp.] Length = 205 Score = 90.9 bits (224), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 55/163 (33%), Positives = 88/163 (53%), Gaps = 20/163 (12%) Query: 49 EKAASLLAYVPFRSELDCRPLIAGAWALGREVLLPRVIAEAGTMSLHTVGSWEELAPGAY 108 ++A ++ Y+ RSE+ R + A G+ +++P + G + L + S +ELA G Y Sbjct: 50 QEAECVMWYIDVRSEVRTRHALPLAIDSGKRIVVPFCLD--GELELFRLESMDELAEGMY 107 Query: 109 GILEP------LLPEGNGQEREXXXXXXXXXXXGLAFDRQGGRLGYGKGYYDRMQASLKQ 162 ILEP L+P R G+AFDR GGR+G+GKGYYD++ +++ Sbjct: 108 EILEPREELRDLVPN-----RVRSSDLDVVLVPGVAFDRHGGRVGHGKGYYDKLLGNVRS 162 Query: 163 ESGFALKPPVWIGLAFSQQLVPEVPMDGHDAYMDMLITEEGIF 205 ++ IGLAF Q+V VP+ HD MDM++TE+ ++ Sbjct: 163 DTRL-------IGLAFECQMVGAVPVQAHDIRMDMVVTEDHVY 198 >ref|NP_214187.1| hypothetical protein [Aquifex aeolicus] pir||C70449 conserved hypothetical protein aq_1731 - Aquifex aeolicus gb|AAC07587.1| hypothetical protein [Aquifex aeolicus VF5] Length = 186 Score = 89.0 bits (219), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 62/180 (34%), Positives = 95/180 (52%), Gaps = 17/180 (9%) Query: 29 DERASMSARVCSHALDWLRKEKAASLLAYVPFRSELDCRPLIAGAWALGREVLLPRVIAE 88 +ER +S +V S+ +K+ + Y P + E+D PL +E++LP+V E Sbjct: 20 EERRRLSEKVISNLKSLPEFKKSKKVALYCPIKGEVDLTPLFPEVLK-EKELILPKV--E 76 Query: 89 AGTMSLHTVGSWEELAPGAYGILEPLLPEGNGQEREXXXXXXXXXXXGLAFDRQGGRLGY 148 +SL+ V S L GA+GI+EP+ EG ER G+AFD +G RLG+ Sbjct: 77 GNEISLYRVHSPACLGVGAFGIMEPV--EG---ERVNPEDVDFIAVPGVAFDLEGYRLGF 131 Query: 149 GKGYYDRMQASLKQESGFALKPPVWIGLAFSQQLVPEVPMDGHDAYMDMLITEEGIFHCR 208 GKGYYDR+ LK+ G +G+A+S Q+ +P D D +D+L+TE+ + R Sbjct: 132 GKGYYDRL---LKRVKGLK------VGVAYSFQVFERLPRDAWDIPVDVLVTEKNVRRLR 182 >gb|EAJ93951.1| unknown [environmental sequence] Length = 188 Score = 87.4 bits (215), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 62/186 (33%), Positives = 90/186 (48%), Gaps = 20/186 (10%) Query: 30 ERASMSARVCSHA--------LDWLRKEKAASLLAYVPFRSELDCRPLIAGAWALGREVL 81 +R+++SAR S A L+W +KA + ++ E D R +I W+ G+ V Sbjct: 13 KRSALSAREKSQAELIMLETLLNWEIFKKAEVIHIFIAKPDEPDTRQIIENCWSFGKRVA 72 Query: 82 LPRVIAEAGTMSLHTVGSWEELAPGAYGILEPLLPEGNGQEREXXXXXXXXXXXGLAFDR 141 +P VI + + S++ L G YGI EP PE + G+AFD+ Sbjct: 73 VPLVIPNTFNLIHSEIKSFDRLIHGMYGIQEP-SPE--SRIIMTPDLFDLVIVPGVAFDK 129 Query: 142 QGGRLGYGKGYYDRMQASLKQESGFALKPPVWIGLAFSQQLVPEVPMDGHDAYMDMLITE 201 +G R+G GKGYYDR L+ S F L LAF QL+ VP + HD MD +++E Sbjct: 130 KGRRIGQGKGYYDRF---LELTSAFRL------ALAFDCQLLENVPSELHDIPMDAILSE 180 Query: 202 EGIFHC 207 GI Sbjct: 181 SGILET 186 >gb|EAK44300.1| unknown [environmental sequence] Length = 192 Score = 85.9 bits (211), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 58/173 (33%), Positives = 80/173 (46%), Gaps = 11/173 (6%) Query: 35 SARVCSHALDWLRKEKAASLLAYVPFRSELDCRPLIAGAWALGREVLLPRVIAEAGTMSL 94 + +V + + K + Y P SELD R L G + LP + + + Sbjct: 31 AKKVARTFISKVSKNSGLPIAGYFPIGSELDIRVLFEELHLNGCQCCLPMIRGVSDVLEF 90 Query: 95 HTVGSWEELAPGAYGILEPLLPEGNGQEREXXXXXXXXXXXGLAFDRQGGRLGYGKGYYD 154 + S + L YGI EP G+ + LAFD+ G RLGYG+GYYD Sbjct: 91 GSWCSGDSLVKSKYGIKEP-----RGESKRLIPKTIIAPM--LAFDKWGYRLGYGRGYYD 143 Query: 155 RMQASLKQESGFALKPPVWIGLAFSQQLVPEVPMDGHDAYMDMLITEEGIFHC 207 R A L++ L +G+AF+ Q V VP D D MDM+ITEEG+F C Sbjct: 144 RTIARLRKLDSKIL----VVGVAFAGQEVDHVPKDIKDQKMDMIITEEGLFCC 192 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.319 0.137 0.432 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 283,263,864 Number of extensions: 10589236 Number of successful extensions: 17884 Number of sequences better than 1.0e-05: 212 Number of HSP's gapped: 17851 Number of HSP's successfully gapped: 212 Length of query: 215 Length of database: 757,237,578 Length adjustment: 121 Effective length of query: 94 Effective length of database: 428,710,599 Effective search space: 40298796306 Effective search space used: 40298796306 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 123 (52.0 bits)