BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0370.0019.p (108 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_691576.1| class I heat shock protein [Oceanobacillus ihey... 134 6e-31 sp|P28599|CH10_BACSU 10 kDa chaperonin (Protein Cpn10) (groES pr... 129 2e-29 ref|NP_388483.1| class I heat-shock protein (molecular chaperoni... 128 4e-29 ref|NP_241427.1| class I heat-shock protein (chaperonin) [Bacill... 127 9e-29 prf||1906220A groES gene 126 1e-28 >ref|NP_691576.1| class I heat shock protein [Oceanobacillus iheyensis HTE831] sp|Q8CXL4|CH10_OCEIH 10 kDa chaperonin (Protein Cpn10) (groES protein) dbj|BAC12611.1| class I heat shock protein (chaperonin) [Oceanobacillus iheyensis HTE831] Length = 93 Score = 134 bits (337), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 61/92 (66%), Positives = 83/92 (90%) Query: 16 MIKPLGERVLVEPSEQEQTTSFGIVLPDSSKEKPQEGRIIAVGSGALKDGVRVPLEVKEG 75 MIKPLG+RV++E EQE+TT+ GIVLPDS+KEKPQEG+++AVGSG +++G ++ LEV EG Sbjct: 1 MIKPLGDRVVIELVEQEETTASGIVLPDSAKEKPQEGKVVAVGSGRVENGEKIALEVSEG 60 Query: 76 DRVLFSKYAGTEIKYEGKEYLIMKESDIHAIL 107 DR++FSK+AGTE+KYEG EYLI++E+DI AI+ Sbjct: 61 DRIIFSKFAGTEVKYEGTEYLILRENDILAII 92 >sp|P28599|CH10_BACSU 10 kDa chaperonin (Protein Cpn10) (groES protein) pir||A41884 heat shock protein (chaperonin) groES - Bacillus subtilis gb|AAA22502.1| heat shock protein gb|AAA22530.1| heat shock protein dbj|BAA22518.1| GroES protein [Bacillus subtilis] emb|CAB12421.2| class I heat-shock protein (chaperonin) [Bacillus subtilis subsp. subtilis str. 168] Length = 94 Score = 129 bits (325), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 63/93 (67%), Positives = 80/93 (86%), Gaps = 1/93 (1%) Query: 16 MIKPLGERVLVEPSEQEQTTSFGIVLPDSSKEKPQEGRIIAVGSG-ALKDGVRVPLEVKE 74 M+KPLG+RV++E E E+ T+ GIVLPDS+KEKPQEG+I+A GSG L+ G RV LEVKE Sbjct: 1 MLKPLGDRVVIELVESEEKTASGIVLPDSAKEKPQEGKIVAAGSGRVLESGERVALEVKE 60 Query: 75 GDRVLFSKYAGTEIKYEGKEYLIMKESDIHAIL 107 GDR++FSKYAGTE+KYEG EYLI++ESDI A++ Sbjct: 61 GDRIIFSKYAGTEVKYEGTEYLILRESDILAVI 93 >ref|NP_388483.1| class I heat-shock protein (molecular chaperonin) [Bacillus subtilis] dbj|BAA19726.1| groES [Bacillus subtilis] Length = 108 Score = 128 bits (322), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 62/93 (66%), Positives = 80/93 (86%), Gaps = 1/93 (1%) Query: 16 MIKPLGERVLVEPSEQEQTTSFGIVLPDSSKEKPQEGRIIAVGSG-ALKDGVRVPLEVKE 74 ++KPLG+RV++E E E+ T+ GIVLPDS+KEKPQEG+I+A GSG L+ G RV LEVKE Sbjct: 15 LLKPLGDRVVIELVESEEKTASGIVLPDSAKEKPQEGKIVAAGSGRVLESGERVALEVKE 74 Query: 75 GDRVLFSKYAGTEIKYEGKEYLIMKESDIHAIL 107 GDR++FSKYAGTE+KYEG EYLI++ESDI A++ Sbjct: 75 GDRIIFSKYAGTEVKYEGTEYLILRESDILAVI 107 >ref|NP_241427.1| class I heat-shock protein (chaperonin) [Bacillus halodurans] sp|O50304|CH10_BACHD 10 kDa chaperonin (Protein Cpn10) (groES protein) pir||A83720 class I heat-shock protein (chaperonin) groES [imported] - Bacillus halodurans (strain C-125) dbj|BAB04280.1| class I heat-shock protein (chaperonin) [Bacillus halodurans] Length = 94 Score = 127 bits (318), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 60/93 (64%), Positives = 82/93 (88%), Gaps = 1/93 (1%) Query: 16 MIKPLGERVLVEPSEQEQTTSFGIVLPDSSKEKPQEGRIIAVGSGAL-KDGVRVPLEVKE 74 M+KPLG+RV++E E E+ T+ GIVLPD++KEKPQEGR++AVG+G + ++G ++ LEVKE Sbjct: 1 MLKPLGDRVVIEQVETEEKTASGIVLPDTAKEKPQEGRVVAVGTGRVTENGEKIALEVKE 60 Query: 75 GDRVLFSKYAGTEIKYEGKEYLIMKESDIHAIL 107 GD V+FSKYAGTE+KY+GKEYLI++ESDI AI+ Sbjct: 61 GDSVIFSKYAGTEVKYDGKEYLILRESDILAII 93 >prf||1906220A groES gene Length = 94 Score = 126 bits (317), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 62/93 (66%), Positives = 79/93 (84%), Gaps = 1/93 (1%) Query: 16 MIKPLGERVLVEPSEQEQTTSFGIVLPDSSKEKPQEGRIIAVGSG-ALKDGVRVPLEVKE 74 M+KPLG+RV++E E E+ + GIVLPDS+KEKPQEG+I+A GSG L+ G RV LEVKE Sbjct: 1 MLKPLGDRVVIELVESEEKYASGIVLPDSAKEKPQEGKIVAAGSGRVLESGERVALEVKE 60 Query: 75 GDRVLFSKYAGTEIKYEGKEYLIMKESDIHAIL 107 GDR++FSKYAGTE+KYEG EYLI++ESDI A++ Sbjct: 61 GDRIIFSKYAGTEVKYEGTEYLILRESDILAVI 93 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.315 0.137 0.380 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 164,452,159 Number of extensions: 6418603 Number of successful extensions: 12483 Number of sequences better than 1.0e-05: 727 Number of HSP's gapped: 11787 Number of HSP's successfully gapped: 732 Length of query: 108 Length of database: 757,237,578 Length adjustment: 74 Effective length of query: 34 Effective length of database: 556,320,252 Effective search space: 18914888568 Effective search space used: 18914888568 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 120 (50.8 bits)