BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0370.0012.p (313 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_780876.1| ABC-type multidrug transport system [Clostridiu... 258 1e-67 ref|NP_349340.1| ABC-type multidrug transport system, ATPase com... 249 4e-65 ref|NP_347497.1| ABC-type multidrug transport system, ATPase com... 232 8e-60 ref|NP_782390.1| bacitracin transport ATP-binding protein bcrA [... 226 5e-58 ref|ZP_00098769.1| COG1131: ABC-type multidrug transport system,... 222 7e-57 >ref|NP_780876.1| ABC-type multidrug transport system [Clostridium tetani E88] gb|AAO34813.1| ABC-type multidrug transport system [Clostridium tetani E88] Length = 307 Score = 258 bits (659), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 126/304 (41%), Positives = 197/304 (64%), Gaps = 2/304 (0%) Query: 8 LKPAVFEARHVSKQYRSGFALQGLDMKIMEGDIYGFVGENGAGKTTLMKIIGGLVQPTDG 67 + V + ++++K+Y + A+ + M+I +G+IYG VG+NGAGKTTL+K+I GL P+ G Sbjct: 1 MSDTVLKVKNITKKYHNHLAVNNVSMEINQGEIYGLVGKNGAGKTTLLKMICGLTIPSIG 60 Query: 68 RILLFGQQGKKELCAARRRVGFLIDMPALYPHMSAEENLTFYHHVLGIRNPKRIGEALQA 127 I LF + + L +R R G +I+ P+ +P++SA++NL +Y GI + E ++A Sbjct: 61 EISLFNETSQNGLNKSRTRTGSIIETPSFFPYLSAKKNLEYYRIQKGIAEKNCVDEIIKA 120 Query: 128 VALTDTGNKRTSEYSLGMRQRLGLAVALLGSPQLLVLDEPINGLDPAGIVDMRHILERLA 187 V L D GNK+ +SLGM+QRLGLA+AL+ +P LL+LDEPINGLDP GIV+ R IL +L Sbjct: 121 VNLEDAGNKKFKNFSLGMKQRLGLALALMANPDLLILDEPINGLDPTGIVEFREILLKLN 180 Query: 188 KEEGVTILISSHILGELQLLATRYGFIHKGRLVQEIAAGELLQSAQAMICIAAPNAESTA 247 KE TI+ISSHILGEL +AT YGFI+KG LV+++++ EL + + + + N E Sbjct: 181 KERNTTIIISSHILGELSQMATMYGFINKGELVEQLSSKELQEKCKRCLSVKVDNTEKAV 240 Query: 248 ELLKQRLQIPDISVNTAGELQIPKSSVDLERLMA-VLLQEGIPVEGFNLSAPNLEHYYMD 306 ++++ L + V E+++ +D ++A L+ G+ + N NLE+Y+++ Sbjct: 241 TIIEKELNCSNYKVLNNNEIRL-YDHIDTPEIVAQSLVYNGVMLYSMNQVGANLENYFIN 299 Query: 307 LIGG 310 LIGG Sbjct: 300 LIGG 303 >ref|NP_349340.1| ABC-type multidrug transport system, ATPase component [Clostridium acetobutylicum] pir||E97236 ABC-type multidrug transport system, ATPase component CAC2734 [imported] - Clostridium acetobutylicum gb|AAK80680.1| ABC-type multidrug transport system, ATPase component [Clostridium acetobutylicum] Length = 301 Score = 249 bits (637), Expect = 4e-65, Method: Compositional matrix adjust. Identities = 125/299 (41%), Positives = 189/299 (63%), Gaps = 3/299 (1%) Query: 12 VFEARHVSKQYRSGFALQGLDMKIMEGDIYGFVGENGAGKTTLMKIIGGLVQPTDGRILL 71 V + ++K+Y A+ ++MK+ +GDIYG +G+NGAGKTT+MKI GL+ + G I L Sbjct: 4 VLQTNCLTKKYGKQLAVNKINMKVEKGDIYGLIGKNGAGKTTIMKIACGLIHQSQGDIQL 63 Query: 72 FGQQGKKELCAARRRVGFLIDMPALYPHMSAEENLTFYHHVLGIRNPKRIGEALQAVALT 131 F ++ R+R+G +I+ PALYP+M+A ENL +Y +LGI + + E L V L Sbjct: 64 FESS---DVEKGRKRIGCIIEYPALYPYMTARENLIYYDKLLGIVDYSNVDEVLNLVGLG 120 Query: 132 DTGNKRTSEYSLGMRQRLGLAVALLGSPQLLVLDEPINGLDPAGIVDMRHILERLAKEEG 191 DTG K+T +SLGM+QRL +A++LLG+P L+LDEPINGLDP GI ++R +L RL E Sbjct: 121 DTGKKKTKAFSLGMKQRLSIAISLLGNPDFLILDEPINGLDPYGIKEVRELLLRLNTENE 180 Query: 192 VTILISSHILGELQLLATRYGFIHKGRLVQEIAAGELLQSAQAMICIAAPNAESTAELLK 251 +TILISSHILGEL +AT+YG I+KG L+ E A EL + + + + ++E A +LK Sbjct: 181 ITILISSHILGELAKIATKYGIINKGVLIDEFKASELNERCKKCLNVVVNDSEKAAYILK 240 Query: 252 QRLQIPDISVNTAGELQIPKSSVDLERLMAVLLQEGIPVEGFNLSAPNLEHYYMDLIGG 310 ++ D V G++ I ++ L++ G+ V L ++E Y++ ++GG Sbjct: 241 NDIKSSDFEVFNEGKICIYDCLDIPAQINKELIENGVLVSSIGLEGNDIEAYFVKMMGG 299 >ref|NP_347497.1| ABC-type multidrug transport system, ATPase component [Clostridium acetobutylicum] pir||B97006 ABC-type multidrug transport system, ATPase component CAC0861 [imported] - Clostridium acetobutylicum gb|AAK78837.1| ABC-type multidrug transport system, ATPase component [Clostridium acetobutylicum] Length = 307 Score = 232 bits (592), Expect = 8e-60, Method: Compositional matrix adjust. Identities = 123/301 (40%), Positives = 184/301 (61%) Query: 8 LKPAVFEARHVSKQYRSGFALQGLDMKIMEGDIYGFVGENGAGKTTLMKIIGGLVQPTDG 67 +K AV + ++SK+Y+ L +++ I +GDIYGF+G+NGAGKTTLMK+I GL+ G Sbjct: 1 MKDAVLKTVNLSKRYKDVTVLDNVNITINKGDIYGFIGQNGAGKTTLMKLISGLIIKDSG 60 Query: 68 RILLFGQQGKKELCAARRRVGFLIDMPALYPHMSAEENLTFYHHVLGIRNPKRIGEALQA 127 I LFG+ + + R+R+G LI+ PALY + S +NL GI + I + L+ Sbjct: 61 TIELFGENDTRNIENMRKRMGCLIETPALYDYSSVYDNLEINRIQKGIPGRESIDKVLKM 120 Query: 128 VALTDTGNKRTSEYSLGMRQRLGLAVALLGSPQLLVLDEPINGLDPAGIVDMRHILERLA 187 V L + K+ + S+GM+Q+LGLA+AL+G P+ L+LDEPINGLDP I+++R +L +L Sbjct: 121 VGLYNERKKQVRKLSMGMKQKLGLAMALIGDPEFLILDEPINGLDPMSIIEIRKLLNKLN 180 Query: 188 KEEGVTILISSHILGELQLLATRYGFIHKGRLVQEIAAGELLQSAQAMICIAAPNAESTA 247 KE VTILISSHIL EL A YG IH GRLV++I + EL + Q + I NAE Sbjct: 181 KEFDVTILISSHILSELYQFANSYGIIHNGRLVEQITSRELEERCQKFLYIRTDNAERAV 240 Query: 248 ELLKQRLQIPDISVNTAGELQIPKSSVDLERLMAVLLQEGIPVEGFNLSAPNLEHYYMDL 307 +++ L+ + V +++ + + ++ +VLL G V+ L NLE Y+ L Sbjct: 241 FTIERILKTQNYEVMHDNAIKLYEYLDEPSKVASVLLNNGSLVDEIALKGDNLEDYFSKL 300 Query: 308 I 308 + Sbjct: 301 V 301 >ref|NP_782390.1| bacitracin transport ATP-binding protein bcrA [Clostridium tetani E88] gb|AAO36327.1| bacitracin transport ATP-binding protein bcrA [Clostridium tetani E88] Length = 304 Score = 226 bits (576), Expect = 5e-58, Method: Compositional matrix adjust. Identities = 115/299 (38%), Positives = 184/299 (61%), Gaps = 2/299 (0%) Query: 12 VFEARHVSKQYRSGFALQGLDMKIMEGDIYGFVGENGAGKTTLMKIIGGLVQPTDGRILL 71 V +++K Y++ + L++ + GDIYGF+G+NGAGKT+ +K++ GL + + G I L Sbjct: 4 VLRTYNLTKTYKNVNVVDNLNLNVKTGDIYGFIGKNGAGKTSTIKMVMGLSKASSGEIEL 63 Query: 72 FGQQGKKELCAARRRVGFLIDMPALYPHMSAEENLTFYHHVLGIRNPKRIGEALQAVALT 131 FG + C R +G LID P Y +++ EENL + ++G I +AL+ V L Sbjct: 64 FGDKILNNKCYGR--IGSLIDYPGFYLNLTGEENLEIHRRMMGFTRKNSINKALEMVGLK 121 Query: 132 DTGNKRTSEYSLGMRQRLGLAVALLGSPQLLVLDEPINGLDPAGIVDMRHILERLAKEEG 191 + +K+ +SLGMRQRLG+A ALL P+ L+LDEP NGLDP GI ++R ++ L ++ G Sbjct: 122 NIEDKKVKNFSLGMRQRLGIARALLHHPEFLILDEPTNGLDPIGIKEIRELILDLNQKFG 181 Query: 192 VTILISSHILGELQLLATRYGFIHKGRLVQEIAAGELLQSAQAMICIAAPNAESTAELLK 251 +T+LISSHIL E+QLL T+ G IHKGRL++EI+ EL + + I + N + + +L+ Sbjct: 182 ITVLISSHILSEIQLLVTKIGIIHKGRLIEEISYDELKKRNRHYIQLKVDNDKKASFILE 241 Query: 252 QRLQIPDISVNTAGELQIPKSSVDLERLMAVLLQEGIPVEGFNLSAPNLEHYYMDLIGG 310 ++L I D V G ++I + + + +L+ + V+ ++ NLE Y++ L GG Sbjct: 242 KKLDIRDYVVWEDGIIRIYEKLNVVGNINKILVSNDVRVDEIYINLDNLEDYFIRLTGG 300 >ref|ZP_00098769.1| COG1131: ABC-type multidrug transport system, ATPase component [Desulfitobacterium hafniense] Length = 320 Score = 222 bits (566), Expect = 7e-57, Method: Compositional matrix adjust. Identities = 114/249 (45%), Positives = 170/249 (68%), Gaps = 2/249 (0%) Query: 3 RGVFRLKPAVFEARHVSKQYRSGFALQGLDMKIMEGDIYGFVGENGAGKTTLMKIIGGLV 62 +G F++ V +SK Y AL GL + + +G IYGFVG+NGAGKTTL++++ GL Sbjct: 22 KGGFKMD-YVLTTHALSKHYGQFKALNGLSLHVPQGAIYGFVGKNGAGKTTLIRLVCGLQ 80 Query: 63 QPTDGRILLFGQQGK-KELCAARRRVGFLIDMPALYPHMSAEENLTFYHHVLGIRNPKRI 121 +PT G L+G + +E+ +RRR+G +++ P++Y M+A ENL + VLG+ + + I Sbjct: 81 RPTSGDYSLYGVSSRTREIVKSRRRMGAVVETPSIYLEMTARENLKEQYRVLGLPSFEGI 140 Query: 122 GEALQAVALTDTGNKRTSEYSLGMRQRLGLAVALLGSPQLLVLDEPINGLDPAGIVDMRH 181 E L+ V L + G K+ +SLGM+QRLG+AVAL G P LVLDEP+NGLDP GI++MR Sbjct: 141 PELLELVGLAEAGQKKAKNFSLGMKQRLGIAVALCGDPDFLVLDEPVNGLDPQGIIEMRE 200 Query: 182 ILERLAKEEGVTILISSHILGELQLLATRYGFIHKGRLVQEIAAGELLQSAQAMICIAAP 241 ++ +L +E+ +T+LISSHIL EL LAT YGFI GR+V+EI+AGEL ++ + + + Sbjct: 201 LILKLNREQRITVLISSHILDELARLATHYGFIDGGRMVKEISAGELEEACRKCLRVEVS 260 Query: 242 NAESTAELL 250 + E+ A +L Sbjct: 261 STETLARVL 269 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.321 0.140 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 441,090,632 Number of extensions: 17951430 Number of successful extensions: 111904 Number of sequences better than 1.0e-05: 17527 Number of HSP's gapped: 91531 Number of HSP's successfully gapped: 18436 Length of query: 313 Length of database: 757,237,578 Length adjustment: 125 Effective length of query: 188 Effective length of database: 417,850,203 Effective search space: 78555838164 Effective search space used: 78555838164 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 126 (53.1 bits)