BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0370.0010.p (327 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|AAN87501.1| Peptide methionine sulfoxide reductase [Heliobaci... 350 2e-95 ref|NP_981861.1| peptide methionine sulfoxide reductase [Bacillu... 345 6e-94 ref|NP_835097.1| Peptide methionine sulfoxide reductase [Bacillu... 345 6e-94 ref|NP_653905.1| DUF25, Domain of unknown function DUF25 [Bacill... 345 7e-94 ref|NP_692655.1| peptide methionine sulfoxide reductase [Oceanob... 336 4e-91 >gb|AAN87501.1| Peptide methionine sulfoxide reductase [Heliobacillus mobilis] Length = 337 Score = 350 bits (899), Expect = 2e-95, Method: Compositional matrix adjust. Identities = 169/310 (54%), Positives = 210/310 (67%), Gaps = 1/310 (0%) Query: 9 RTELATFAGGCFWCMVKPFDELPGIVSVVSGYTGGHTENPXXXXXXXXXXXXXXAVQITY 68 +T LATFAGGCFWCMV PF+EL GI ++SGYTGGH ENP A+QITY Sbjct: 20 QTALATFAGGCFWCMVGPFEELDGIHQILSGYTGGHKENPTYHEVCSDETGHFEAIQITY 79 Query: 69 EPELFPYERLLDIYWQLIDPTDKGGQFMDRGYSYRTAIFVHNEXXXXXXXXXXXXXXXXX 128 +P YE LLD +W+ IDPTD GGQF DRG SYRTAIF H+E Sbjct: 80 DPAAVAYETLLDRFWRQIDPTDPGGQFHDRGSSYRTAIFYHDEGQREKAEASKKELEESR 139 Query: 129 RFKDPIVTEILPAAPFYSAEALHQDYYKTHPLDYKLYLKGSGRDEFLEQHWNSPEDQKRL 188 RF PIVT+ILPA+ FY AEA HQDY+K P Y LY GSGRD FLEQ+W PE + +L Sbjct: 140 RFDKPIVTQILPASTFYPAEAYHQDYHKKSPFRYGLYRMGSGRDAFLEQYWRKPE-KAQL 198 Query: 189 RNQLTRLQYEVTQHKASEPPYENAYWNEFRDGIYVDVISGDPLFSSADKFDSATGWPSFT 248 + +L+ +QYEVTQ+ +EPP+ N YW+ R+GIYVD++SG+PLFSS DKFDS GWPSF+ Sbjct: 199 KQKLSPVQYEVTQNNGTEPPFRNEYWDNHREGIYVDIVSGEPLFSSIDKFDSGCGWPSFS 258 Query: 249 GPIAGGLIRREADYSGGEVRTALRSRLSGAYLGHLFFDGPEPAKQHYRVNSAALRFIPKE 308 P+ ++ + D S G RT +RS+ + ++LGH+F DGP P Y +NSAALRFIPKE Sbjct: 259 RPLHEEKVKEKMDLSHGMTRTEVRSQGADSHLGHVFDDGPAPGGLRYCINSAALRFIPKE 318 Query: 309 ELEANGLGRY 318 +LE G G+Y Sbjct: 319 DLEKEGYGQY 328 >ref|NP_981861.1| peptide methionine sulfoxide reductase [Bacillus cereus ATCC 10987] gb|AAS44469.1| peptide methionine sulfoxide reductase [Bacillus cereus ATCC 10987] Length = 321 Score = 345 bits (886), Expect = 6e-94, Method: Compositional matrix adjust. Identities = 166/316 (52%), Positives = 205/316 (64%), Gaps = 4/316 (1%) Query: 4 LNEKNRTELATFAGGCFWCMVKPFDELPGIVSVVSGYTGGHTENPXXXXXXXXXXXXXXA 63 +NEK ELATFAGGCFWCMV PF+E+ GI+ VVSGYTGGH ENP A Sbjct: 3 VNEK--VELATFAGGCFWCMVSPFEEMEGIIKVVSGYTGGHKENPTYKEVCSETTGHYEA 60 Query: 64 VQITYEPELFPYERLLDIYWQLIDPTDKGGQFMDRGYSYRTAIFVHNEXXXXXXXXXXXX 123 VQIT++ PYE LL+IYW+ IDPTD GGQF DRG SY T IF HNE Sbjct: 61 VQITFDANKMPYEELLNIYWRQIDPTDVGGQFHDRGQSYETVIFYHNEEQHKKAEASKEG 120 Query: 124 XXXXXRFKDPIVTEILPAAPFYSAEALHQDYYKTHPLDYKLYLKGSGRDEFLEQHWNSPE 183 RF PI T+ILPAA FY AE HQ Y+K + Y+LY KGSGRD F++QHW P+ Sbjct: 121 LARSGRFSKPIATKILPAATFYPAEEYHQGYHKKNEFRYELYRKGSGRDAFIKQHW--PK 178 Query: 184 DQKRLRNQLTRLQYEVTQHKASEPPYENAYWNEFRDGIYVDVISGDPLFSSADKFDSATG 243 D L+ +L +Q+ VTQ +EPP+ N YWN +G+YVD++SG+PLF+S DKFDS G Sbjct: 179 DNAHLKEKLNEMQFYVTQENGTEPPFRNEYWNHKEEGLYVDIVSGEPLFTSLDKFDSGCG 238 Query: 244 WPSFTGPIAGGLIRREADYSGGEVRTALRSRLSGAYLGHLFFDGPEPAKQHYRVNSAALR 303 WPSFT P+ ++ + D S RT +RS+ ++LGH+F DGP P Y +NSAALR Sbjct: 239 WPSFTKPVMSASVKEKMDVSHNMTRTEVRSKEGDSHLGHVFPDGPGPNGLRYCINSAALR 298 Query: 304 FIPKEELEANGLGRYV 319 FIPKEELE G G ++ Sbjct: 299 FIPKEELEKEGYGDFL 314 >ref|NP_835097.1| Peptide methionine sulfoxide reductase [Bacillus cereus ATCC 14579] gb|AAP12298.1| Peptide methionine sulfoxide reductase [Bacillus cereus ATCC 14579] Length = 321 Score = 345 bits (886), Expect = 6e-94, Method: Compositional matrix adjust. Identities = 166/316 (52%), Positives = 204/316 (64%), Gaps = 4/316 (1%) Query: 4 LNEKNRTELATFAGGCFWCMVKPFDELPGIVSVVSGYTGGHTENPXXXXXXXXXXXXXXA 63 +NEK ELATFAGGCFWCMV PF+E+ GI+ VVSGYTGGH ENP A Sbjct: 3 VNEK--VELATFAGGCFWCMVSPFEEMEGIIKVVSGYTGGHKENPTYKEVCSETTGHYEA 60 Query: 64 VQITYEPELFPYERLLDIYWQLIDPTDKGGQFMDRGYSYRTAIFVHNEXXXXXXXXXXXX 123 VQIT++ PYE LL+IYW+ IDPTD GGQF DRG SY T IF HNE Sbjct: 61 VQITFDANKMPYEELLNIYWRQIDPTDIGGQFHDRGQSYETVIFYHNEEQHKKAEASKEE 120 Query: 124 XXXXXRFKDPIVTEILPAAPFYSAEALHQDYYKTHPLDYKLYLKGSGRDEFLEQHWNSPE 183 RF PI T+ILPAA FY AE HQ Y+K + Y+LY KGSGRD F++QHW P+ Sbjct: 121 LEQSGRFSKPIATKILPAATFYPAEEYHQGYHKKNTFRYELYRKGSGRDAFIKQHW--PK 178 Query: 184 DQKRLRNQLTRLQYEVTQHKASEPPYENAYWNEFRDGIYVDVISGDPLFSSADKFDSATG 243 D L+ +L +QY VTQ +EPP+ N YWN +G+YVD++SG+PLF+S DKFDS G Sbjct: 179 DNAHLKEKLNEMQYYVTQENGTEPPFRNEYWNHKEEGLYVDIVSGEPLFTSLDKFDSGCG 238 Query: 244 WPSFTGPIAGGLIRREADYSGGEVRTALRSRLSGAYLGHLFFDGPEPAKQHYRVNSAALR 303 WPSFT P+ ++ + D S RT +RS+ ++LGH+F DGP P Y +NSAALR Sbjct: 239 WPSFTKPVMSASVKEKMDVSHNMTRTEVRSKEGDSHLGHVFPDGPGPNGLRYCINSAALR 298 Query: 304 FIPKEELEANGLGRYV 319 FIPKEELE G ++ Sbjct: 299 FIPKEELEKEGYSDFL 314 >ref|NP_653905.1| DUF25, Domain of unknown function DUF25 [Bacillus anthracis A2012] ref|NP_847833.1| peptide methionine sulfoxide reductase [Bacillus anthracis str. Ames] gb|AAP29319.1| peptide methionine sulfoxide reductase [Bacillus anthracis str. Ames] Length = 321 Score = 345 bits (886), Expect = 7e-94, Method: Compositional matrix adjust. Identities = 166/316 (52%), Positives = 205/316 (64%), Gaps = 4/316 (1%) Query: 4 LNEKNRTELATFAGGCFWCMVKPFDELPGIVSVVSGYTGGHTENPXXXXXXXXXXXXXXA 63 +NEK ELATFAGGCFWCMV PF+E+ GI+ VVSGYTGGH ENP A Sbjct: 3 VNEK--VELATFAGGCFWCMVSPFEEMVGIIKVVSGYTGGHKENPTYKEVCSETTGHYEA 60 Query: 64 VQITYEPELFPYERLLDIYWQLIDPTDKGGQFMDRGYSYRTAIFVHNEXXXXXXXXXXXX 123 VQIT++ PYE LL+IYW+ IDPTD GGQF DRG SY T IF HNE Sbjct: 61 VQITFDANKMPYEELLNIYWRQIDPTDVGGQFHDRGQSYETVIFYHNEEQHKKAEASKEE 120 Query: 124 XXXXXRFKDPIVTEILPAAPFYSAEALHQDYYKTHPLDYKLYLKGSGRDEFLEQHWNSPE 183 RF PI T+ILPAA FY AE HQ Y+K + Y+LY KGSGRD F++QHW P+ Sbjct: 121 LAKCGRFSKPIATKILPAATFYPAEEYHQGYHKKNTFRYELYRKGSGRDAFIKQHW--PK 178 Query: 184 DQKRLRNQLTRLQYEVTQHKASEPPYENAYWNEFRDGIYVDVISGDPLFSSADKFDSATG 243 D L+ +L +Q+ VTQ +EPP+ N YWN +G+YVD++SG+PLF+S DKFDS G Sbjct: 179 DNAHLKEKLNDMQFYVTQENGTEPPFRNEYWNHKEEGLYVDIVSGEPLFTSIDKFDSGCG 238 Query: 244 WPSFTGPIAGGLIRREADYSGGEVRTALRSRLSGAYLGHLFFDGPEPAKQHYRVNSAALR 303 WPSFT P+ ++ + D S RT +RS+ ++LGH+F DGP P Y +NSAALR Sbjct: 239 WPSFTKPVMSASVKEKMDVSHNMTRTEVRSKEGDSHLGHVFPDGPGPNGLRYCINSAALR 298 Query: 304 FIPKEELEANGLGRYV 319 FIPKEELE G G ++ Sbjct: 299 FIPKEELEKEGYGDFL 314 >ref|NP_692655.1| peptide methionine sulfoxide reductase [Oceanobacillus iheyensis HTE831] dbj|BAC13690.1| peptide methionine sulfoxide reductase [Oceanobacillus iheyensis HTE831] Length = 319 Score = 336 bits (862), Expect = 4e-91, Method: Compositional matrix adjust. Identities = 155/312 (49%), Positives = 208/312 (66%), Gaps = 1/312 (0%) Query: 9 RTELATFAGGCFWCMVKPFDELPGIVSVVSGYTGGHTENPXXXXXXXXXXXXXXAVQITY 68 +TE+ATFAGGCFWCMV+PFD+ PG++ + SGYTGGH ENP AVQIT+ Sbjct: 4 QTEIATFAGGCFWCMVEPFDQRPGVIDIRSGYTGGHVENPTYEQVCTNTTGHVEAVQITF 63 Query: 69 EPELFPYERLLDIYWQLIDPTDKGGQFMDRGYSYRTAIFVHNEXXXXXXXXXXXXXXXXX 128 +PE+ PY+ L++ +WQ IDPTD GGQF DRG SY+TAIF H E Sbjct: 64 DPEIMPYKELVETFWQQIDPTDAGGQFNDRGESYQTAIFYHTEEQKKIAEDSKKALDESN 123 Query: 129 RFKDPIVTEILPAAPFYSAEALHQDYYKTHPLDYKLYLKGSGRDEFLEQHWNSPEDQKRL 188 RFK PIVT +LPA PFY AE HQDYYK Y++Y KGSGR +F++ +W + D+ L Sbjct: 124 RFKMPIVTPVLPAKPFYEAEEGHQDYYKKRSFHYRMYKKGSGRQDFIKNNWQNTIDKNEL 183 Query: 189 RNQLTRLQYEVTQHKASEPPYENAYWNEFRDGIYVDVISGDPLFSSADKFDSATGWPSFT 248 + +LT +QY VTQ +E P++N YWN ++GIYVD+I G+ LFSS +++D+ GWPSFT Sbjct: 184 KEKLTPIQYHVTQENGTERPFDNEYWNNTQEGIYVDIIKGNVLFSSKEQYDAGCGWPSFT 243 Query: 249 GPIAGGLIRREADYSGGEVRTALRSRLSGAYLGHLFFDGPE-PAKQHYRVNSAALRFIPK 307 P+ I + D + G VRT +RS+ S ++LGH+F DGP+ Y +NSAA+RFIPK Sbjct: 244 KPVDPYQIEDKVDKTHGMVRTEIRSKQSDSHLGHVFEDGPQDKGGLRYCMNSAAMRFIPK 303 Query: 308 EELEANGLGRYV 319 E++E G +Y+ Sbjct: 304 EKMEEEGYSKYL 315 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.319 0.139 0.434 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 496,834,644 Number of extensions: 20180874 Number of successful extensions: 38368 Number of sequences better than 1.0e-05: 1484 Number of HSP's gapped: 37141 Number of HSP's successfully gapped: 1506 Length of query: 327 Length of database: 757,237,578 Length adjustment: 126 Effective length of query: 201 Effective length of database: 415,135,104 Effective search space: 83442155904 Effective search space used: 83442155904 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 126 (53.1 bits)