BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0370.0008.p (182 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_388966.1| alternate gene name: yucH~similar to nuclease i... 155 6e-37 sp|O07939|YIST_BACSU Hypothetical protein yisT >gi|1934842|emb|C... 154 7e-37 ref|NP_388444.1| nuclease inhibitor [Bacillus subtilis] >gi|2833... 145 3e-34 ref|NP_832078.1| DinB protein [Bacillus cereus ATCC 14579] >gi|2... 141 6e-33 ref|NP_656234.1| hypothetical protein predicted by GeneMark [Bac... 140 2e-32 >ref|NP_388966.1| alternate gene name: yucH~similar to nuclease inhibitor [Bacillus subtilis] pir||C69838 nuclease inhibitor homolog yisT - Bacillus subtilis Length = 171 Score = 155 bits (391), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 71/171 (41%), Positives = 114/171 (66%), Gaps = 2/171 (1%) Query: 11 MLQHPHQLYEYHVWANDRLFTHLEQLPKEVFHAKVTSVFPSVSQTFGHLYMYEQLYMSVL 70 ++ Q Y+YH WAN ++FTH+E LP+E + +V SVFPSVS H+ + ++++VL Sbjct: 2 LMTDAKQFYDYHSWANKKIFTHIENLPEETAYQEVKSVFPSVSDVLLHMCRADYIWLNVL 61 Query: 71 AEVPNEKIFPRIPDWTEEAQGKTVDEMRRLFSSVAEQFRDLLRRTSDLDKAMTIEHPRYG 130 + V ++I + AQG +++ + + Q+ D R +DL++ T++HP+ G Sbjct: 62 SGVAYQEIIDSAGK-LQSAQGNMA-AIKQHAAELESQYHDFFSRQTDLEQTFTMQHPKLG 119 Query: 131 SLDTHFSEILRHVVNHGTYHRGNVTAMLRQQGHTGVPTDYMFYLVEQRDGQ 181 +L++ +++ + HVVNHGTYHRGNVTAMLRQ H+GVPTDYM+YL E+R+ + Sbjct: 120 TLESTYADTILHVVNHGTYHRGNVTAMLRQLDHSGVPTDYMYYLYEKRESK 170 >sp|O07939|YIST_BACSU Hypothetical protein yisT emb|CAB07963.1| unknown [Bacillus subtilis] emb|CAA70649.1| YisT [Bacillus subtilis] emb|CAB12925.2| yisT [Bacillus subtilis subsp. subtilis str. 168] Length = 169 Score = 154 bits (390), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 71/165 (43%), Positives = 112/165 (67%), Gaps = 2/165 (1%) Query: 17 QLYEYHVWANDRLFTHLEQLPKEVFHAKVTSVFPSVSQTFGHLYMYEQLYMSVLAEVPNE 76 Q Y+YH WAN ++FTH+E LP+E + +V SVFPSVS H+ + ++++VL+ V + Sbjct: 6 QFYDYHSWANKKIFTHIENLPEETAYQEVKSVFPSVSDVLLHMCRADYIWLNVLSGVAYQ 65 Query: 77 KIFPRIPDWTEEAQGKTVDEMRRLFSSVAEQFRDLLRRTSDLDKAMTIEHPRYGSLDTHF 136 +I + AQG +++ + + Q+ D R +DL++ T++HP+ G+L++ + Sbjct: 66 EIIDSAGK-LQSAQGNMA-AIKQHAAELESQYHDFFSRQTDLEQTFTMQHPKLGTLESTY 123 Query: 137 SEILRHVVNHGTYHRGNVTAMLRQQGHTGVPTDYMFYLVEQRDGQ 181 ++ + HVVNHGTYHRGNVTAMLRQ H+GVPTDYM+YL E+R+ + Sbjct: 124 ADTILHVVNHGTYHRGNVTAMLRQLDHSGVPTDYMYYLYEKRESK 168 >ref|NP_388444.1| nuclease inhibitor [Bacillus subtilis] sp|Q02886|DINB_BACSU DinB protein pir||F69615 nuclease inhibitor dinB - Bacillus subtilis dbj|BAA19396.1| DNA DAMAGE-INDUCIBLE DINB PROTEIN, SIMILAR PRODUCT IN SYNECHOCYSTIS. [Bacillus subtilis] emb|CAB12370.1| nuclease inhibitor [Bacillus subtilis subsp. subtilis str. 168] Length = 172 Score = 145 bits (367), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 66/158 (41%), Positives = 101/158 (63%) Query: 17 QLYEYHVWANDRLFTHLEQLPKEVFHAKVTSVFPSVSQTFGHLYMYEQLYMSVLAEVPNE 76 +LYEY+VWAN ++F L++LPKE++H ++ SVFPS+S H+Y+ + ++ V + Sbjct: 7 KLYEYNVWANQQIFNRLKELPKEIYHQEIQSVFPSISHVLSHVYLSDLGWIEVFSGKTLS 66 Query: 77 KIFPRIPDWTEEAQGKTVDEMRRLFSSVAEQFRDLLRRTSDLDKAMTIEHPRYGSLDTHF 136 E+ + K ++EM LF ++E++ L++ L+K + I++P G + T Sbjct: 67 DALALAEQLKEQTEAKEIEEMEDLFLRLSERYILFLQQKEQLNKPLQIQNPSSGIMKTTV 126 Query: 137 SEILRHVVNHGTYHRGNVTAMLRQQGHTGVPTDYMFYL 174 SE+L HVVNHGTYHRGN+TAMLRQ G+ PTDY YL Sbjct: 127 SELLPHVVNHGTYHRGNITAMLRQAGYASAPTDYGLYL 164 >ref|NP_832078.1| DinB protein [Bacillus cereus ATCC 14579] gb|AAP09279.1| DinB protein [Bacillus cereus ATCC 14579] Length = 174 Score = 141 bits (356), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 65/158 (41%), Positives = 106/158 (67%), Gaps = 4/158 (2%) Query: 20 EYHVWANDRLFTHLEQLP--KEVFHAKVTSVFPSVSQTFGHLYMYEQLYMSVL-AEVPNE 76 +YH WAN RLF L++LP + +F+ ++ SVFPS+ TF H+Y+ +Q+++ +L + NE Sbjct: 10 DYHAWANTRLFNRLKELPNYETIFNEQIQSVFPSIKDTFVHIYITDQVWLHILHGKSMNE 69 Query: 77 KIFPRIPDWTEEAQGKTVDEMRRLFSSVAEQFRDLLRRTSDLDKAMTIEHPRYGSLDTHF 136 I R D ++ + K++ E+ ++F ++A Q++D L D++ IE+P G L+T Sbjct: 70 AIQDR-EDLRKQIETKSLHELEKMFENMANQYKDFLITIQDVNAVFVIENPYVGKLETSI 128 Query: 137 SEILRHVVNHGTYHRGNVTAMLRQQGHTGVPTDYMFYL 174 E+++HVVNHGTYHRGN+TAM+RQ GH+ D++ YL Sbjct: 129 LELVQHVVNHGTYHRGNITAMIRQLGHSSTMMDFVLYL 166 >ref|NP_656234.1| hypothetical protein predicted by GeneMark [Bacillus anthracis A2012] Length = 174 Score = 140 bits (352), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 67/168 (39%), Positives = 110/168 (65%), Gaps = 8/168 (4%) Query: 10 YMLQHPHQLYEYHVWANDRLFTHLEQLP--KEVFHAKVTSVFPSVSQTFGHLYMYEQLYM 67 YML+ +YH WAN RLF +++LP + +F ++ SVFPS+ TF H+Y+ +Q+++ Sbjct: 4 YMLKQV----DYHAWANIRLFDRIKELPNYEAIFTEQIQSVFPSIKDTFAHIYITDQVWL 59 Query: 68 SVL-AEVPNEKIFPRIPDWTEEAQGKTVDEMRRLFSSVAEQFRDLLRRTSDLDKAMTIEH 126 +L + NE I R + ++ + K++ E+ +LF ++A Q++D L D++ IE+ Sbjct: 60 HILHGKSMNEAIQDR-ENLRKQIETKSLYELEKLFENMANQYKDFLSTIQDVNAVFVIEN 118 Query: 127 PRYGSLDTHFSEILRHVVNHGTYHRGNVTAMLRQQGHTGVPTDYMFYL 174 P G+L+T E+++HVVNHGTYHRGN+TAM+RQ GH+ D++ YL Sbjct: 119 PYAGALETSILELVQHVVNHGTYHRGNITAMIRQLGHSSTMMDFVLYL 166 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.322 0.135 0.412 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 272,796,647 Number of extensions: 10364212 Number of successful extensions: 25701 Number of sequences better than 1.0e-05: 12 Number of HSP's gapped: 25692 Number of HSP's successfully gapped: 12 Length of query: 182 Length of database: 757,237,578 Length adjustment: 118 Effective length of query: 64 Effective length of database: 436,855,896 Effective search space: 27958777344 Effective search space used: 27958777344 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 122 (51.6 bits)