BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0370.0006.p
         (180 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_244197.1| BH3331~unknown [Bacillus halodurans] >gi|253704...    97   2e-19
ref|NP_763167.1| Conserved hypothetical protein [Vibrio vulnific...    89   5e-17
ref|NP_936148.1| conserved hypothetical protein [Vibrio vulnific...    79   7e-14

>ref|NP_244197.1| BH3331~unknown [Bacillus halodurans]
 pir||C84066 hypothetical protein BH3331 [imported] - Bacillus halodurans
           (strain C-125)
 dbj|BAB07050.1| BH3331~unknown [Bacillus halodurans]
          Length = 174

 Score = 97.1 bits (240), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 53/128 (41%), Positives = 66/128 (51%), Gaps = 1/128 (0%)

Query: 1   LHDVFGEKQSXXXXXXXXXXXXXXXXXXXXVFPEMTGNLPVWRSVLALVLLFDIFSGCIA 60
           LHDVFGEK S                     +P++   LP WRS +A +L+FDIFSGCIA
Sbjct: 10  LHDVFGEKPSRGEIIFTLAFGGVLTTALFLAYPDIYEGLPFWRSFVAFLLMFDIFSGCIA 69

Query: 61  NFTASTSNFYAARKTNRXXXXXXXXXXXXXXXXXNTNIGYSIAVWAYTIAGAFIVNAVMG 120
           NFT STSN+YA     R                 +  +  ++ VWAYTI GAFIVN +  
Sbjct: 70  NFTRSTSNYYAIDHKKRIVFLVIHVHLIVVALLIDVPLWPAVVVWAYTIGGAFIVNGLDK 129

Query: 121 RPSQVFVA 128
           R  Q+FVA
Sbjct: 130 R-HQLFVA 136


>ref|NP_763167.1| Conserved hypothetical protein [Vibrio vulnificus CMCP6]
 gb|AAO08157.1| Conserved hypothetical protein [Vibrio vulnificus CMCP6]
          Length = 181

 Score = 89.0 bits (219), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 51/171 (29%), Positives = 78/171 (45%), Gaps = 1/171 (0%)

Query: 1   LHDVFGEKQSXXXXXXXXXXXXXXXXXXXXVFPEMTGNLPVWRSVLALVLLFDIFSGCIA 60
           LH+V GEKQS                    V    +     W+  +  +L+ D+ +GC+A
Sbjct: 10  LHEVLGEKQSLLEIVSIFAFAFVGSAAIYGVLYRPSSPEVTWQVAMGFILIVDVLAGCVA 69

Query: 61  NFTASTSNFYAARKTNRXXXXXXXXXXXXXXXXXNTNIGYSIAVWAYTIAGAFIVNAVMG 120
           NFT  T+ +YA+R+++R                   +I  +  VW YTI  A +VN++ G
Sbjct: 70  NFTRGTNLYYASRRSSRFMFIAIHFHVIAIAWLLGESILLAWMVWIYTITSALVVNSLNG 129

Query: 121 RPSQVFVAXXXXXXXXXXXXXXXDIQPYMLTACLLFMLKVLFSFSVDHYRK 171
              Q+FV+                 +P+ L   L FM+KV+FSF+VDHY K
Sbjct: 130 HRLQLFVSASLMCFGLLLLLLLPL-EPWFLACSLFFMIKVVFSFAVDHYTK 179


>ref|NP_936148.1| conserved hypothetical protein [Vibrio vulnificus YJ016]
 dbj|BAC96118.1| conserved hypothetical protein [Vibrio vulnificus YJ016]
          Length = 195

 Score = 78.6 bits (192), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 54/174 (31%), Positives = 78/174 (44%), Gaps = 5/174 (2%)

Query: 1   LHDVFGEKQSXXXXXXXXXXXXXXXXXXX-XVFPEMTGNLPVWRSVLALVLLFDIFSGCI 59
           LH+VFGEKQS                     ++  M   L  W+  L  VL+ D+ +GC+
Sbjct: 24  LHEVFGEKQSALEIACVFAFAFVGTAIVYWHLYLPMNAELN-WKVALGFVLIADVLAGCV 82

Query: 60  ANFTASTSNFYAARKTNRXXXXXXXXXXXXXXXXXNTNIGYSIAVWAYTIAGAFIVNAVM 119
           ANFT  T+ +YAAR ++R                   ++  +  +W  TIA A ++N++ 
Sbjct: 83  ANFTKGTNQYYAARPSSRFTFIAIHFHIIAIAWLLGGSLLSAWIIWGNTIAAAMVINSLK 142

Query: 120 GRPSQVFVAXXXXXXXXXXXXXXXDIQPYMLTAC-LLFMLKVLFSFSVDHYRKA 172
           G   Q+F+A                     L AC L FM KV+FSF+VDHY  A
Sbjct: 143 GHKFQLFIAANLLCYGLLLLLILPLEP--WLLACSLFFMTKVMFSFAVDHYANA 194


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.327    0.137    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 168,254,005
Number of extensions: 3852208
Number of successful extensions: 8240
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 8232
Number of HSP's successfully gapped: 3
Length of query: 180
Length of database: 757,237,578
Length adjustment: 118
Effective length of query: 62
Effective length of database: 436,855,896
Effective search space: 27085065552
Effective search space used: 27085065552
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 122 (51.6 bits)