BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0370.0005.p (204 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_244198.1| BH3332~unknown conserved protein in others [Bac... 182 3e-45 ref|NP_241868.1| transcriptional regulator (TetR family) [Bacill... 109 5e-23 ref|NP_833324.1| Transcriptional regulator, TetR family [Bacillu... 92 9e-18 ref|NP_657503.1| tetR, Bacterial regulatory proteins, tetR famil... 88 1e-16 ref|NP_979909.1| transcriptional regulator, TetR family [Bacillu... 87 2e-16 >ref|NP_244198.1| BH3332~unknown conserved protein in others [Bacillus halodurans] pir||D84066 hypothetical protein BH3332 [imported] - Bacillus halodurans (strain C-125) dbj|BAB07051.1| BH3332~unknown conserved protein in others [Bacillus halodurans] Length = 195 Score = 182 bits (463), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 94/192 (48%), Positives = 125/192 (65%), Gaps = 1/192 (0%) Query: 4 MNGYERRKQKKMEQIFSVSFKLFSKYGFQKVSVNEIAQEARVSPATIYNYFGTKEQLYGD 63 M+G+ERRKQKKMEQIF+ +F L + YG+ KVS+NEIA EARVSPATI+NYFGTKE+LY Sbjct: 1 MDGFERRKQKKMEQIFTAAFSLMATYGYAKVSINEIATEARVSPATIFNYFGTKEKLYKA 60 Query: 64 MLIYWMDNQLEQYEQILESSLSFPEKTKEIMLLEVKNLKIISDEFMKAPSAEQVGLERMM 123 L +W++ QL YE +L S FPEK +I + E K LK + A + +M+ Sbjct: 61 TLDHWIEQQLSAYEGVLYSDRPFPEKVADIFVREAKQLKAFAHH-TSAKNGVDASPWQMI 119 Query: 124 EQYSEEKVMRFFMKFVALGKQEGYIHLEQTDEMMVMYFTMYKNELGRHWTASNEEGTTIN 183 + SEEKV FF+K + +GKQEGYI + M YF+MY NEL R + + + + Sbjct: 120 LESSEEKVQTFFLKMIEIGKQEGYIATAYSVSTMQRYFSMYMNELTRCFQEEDNDDISRQ 179 Query: 184 MDQWLKLFFYGL 195 +D+ L LFFYGL Sbjct: 180 IDELLHLFFYGL 191 >ref|NP_241868.1| transcriptional regulator (TetR family) [Bacillus halodurans] pir||B83775 transcription regulator (TetR family) BH1002 [imported] - Bacillus halodurans (strain C-125) dbj|BAB04721.1| transcriptional regulator (TetR family) [Bacillus halodurans] Length = 201 Score = 109 bits (272), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 65/194 (33%), Positives = 101/194 (52%), Gaps = 3/194 (1%) Query: 4 MNGYERRKQKKMEQIFSVSFKLFSKYGFQKVSVNEIAQEARVSPATIYNYFGTKEQLYGD 63 M+G++RRK++K I + LF +YG QKVS+ EIA+ A VS TIYNYF +K L + Sbjct: 1 MDGFQRRKEQKKRDILEAALSLFMEYGLQKVSIAEIAKNANVSQVTIYNYFESKHNLTHE 60 Query: 64 MLIYWMDNQLEQYEQILESSLSFPEKTKEIMLLEVKNLKIISDEFMKAPSAEQVGLERMM 123 + +Y+MD + +EQ + S FPEK KEIM + + + I +EF + E E + Sbjct: 61 VFLYYMDKAVRDFEQTVYSDKPFPEKIKEIMFRKKEVARRIHEEFYQYLMKEYTANETIA 120 Query: 124 EQYSEEKVMRFFMKFVALGKQEGYIHLEQTDEMMVMYFTMYKNELGRHWTASNEEGTTIN 183 E + ++ F GK++GY+ + E ++ Y M + + E Sbjct: 121 ENDYMQNALQHFDHLFQEGKEQGYVDPSLSHEAIIFYIKMLNEYIQKEEVY---EKILPL 177 Query: 184 MDQWLKLFFYGLGG 197 + KLFFYG+ G Sbjct: 178 TEDITKLFFYGIMG 191 >ref|NP_833324.1| Transcriptional regulator, TetR family [Bacillus cereus ATCC 14579] gb|AAP10525.1| Transcriptional regulator, TetR family [Bacillus cereus ATCC 14579] Length = 197 Score = 91.7 bits (226), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 55/194 (28%), Positives = 110/194 (56%), Gaps = 2/194 (1%) Query: 4 MNGYERRKQKKMEQIFSVSFKLFSKYGFQKVSVNEIAQEARVSPATIYNYFGTKEQLYGD 63 MNG+ER K+KK I +F LFS+ GF +V + IA+EA VS TIYN+FG+K+ L+ + Sbjct: 1 MNGFERVKEKKKRAIKEAAFVLFSERGFNEVKIEHIAKEANVSQVTIYNHFGSKDALFRE 60 Query: 64 MLIYWMDNQLEQYEQILESSLSFPEKTKEIMLLEVKNLKIISDEFMKAPSAEQVGLERMM 123 ++ ++ ++ + Y+++ E L F + +++++ ++ + + + L + + Sbjct: 61 LIQEFIISEFQYYKELAEEKLPFHDMMQKMIVRKMNTGGLFQPDMLLQMMQRDEELRKFI 120 Query: 124 EQYSEEKVMRFFMKFVALGKQEGYIHLEQTDEMMVMYFTMYKNELGRHWTASNEEGTT-I 182 Y EK++ ++++ + +++ I+ T EMM++Y M+ +LG + A EG Sbjct: 121 YSYQNEKILPWYLEILEQAQRKNEINPHLTKEMMLLYIQMF-TKLGDEFGAQLLEGDREK 179 Query: 183 NMDQWLKLFFYGLG 196 ++ + +FFYGL Sbjct: 180 HIKDIVTMFFYGLS 193 >ref|NP_657503.1| tetR, Bacterial regulatory proteins, tetR family [Bacillus anthracis A2012] ref|NP_845919.1| transcriptional regulator, TetR family [Bacillus anthracis str. Ames] gb|AAP27405.1| transcriptional regulator, TetR family [Bacillus anthracis str. Ames] Length = 197 Score = 87.8 bits (216), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 54/194 (27%), Positives = 107/194 (55%), Gaps = 2/194 (1%) Query: 4 MNGYERRKQKKMEQIFSVSFKLFSKYGFQKVSVNEIAQEARVSPATIYNYFGTKEQLYGD 63 MNG+E+ K+KK I +F LFS+ GF +V + IA+EA VS TIYN+FG+K+ L+ + Sbjct: 1 MNGFEKVKEKKKRAIKEAAFLLFSERGFNEVKIEHIAKEANVSQVTIYNHFGSKDALFRE 60 Query: 64 MLIYWMDNQLEQYEQILESSLSFPEKTKEIMLLEVKNLKIISDEFMKAPSAEQVGLERMM 123 ++ ++ + + Y+++ E L F + +++++ ++ + + + L + Sbjct: 61 LIQEFIICEFQYYKELAEEKLPFHDMMQKMIVRKMNTGGLFQPDMLLQMMQRDEILREFI 120 Query: 124 EQYSEEKVMRFFMKFVALGKQEGYIHLEQTDEMMVMYFTMYKNELGRHWTASNEEGTT-I 182 Y EK++ ++++ + ++ I+ T EMM++Y M+ +LG + A EG Sbjct: 121 YSYQNEKILPWYLEILERAQRNNEINPHLTKEMMLLYIQMF-TKLGDDFGAQLLEGDREK 179 Query: 183 NMDQWLKLFFYGLG 196 ++ + +FFYGL Sbjct: 180 HIQDIVTMFFYGLS 193 >ref|NP_979909.1| transcriptional regulator, TetR family [Bacillus cereus ATCC 10987] gb|AAS42517.1| transcriptional regulator, TetR family [Bacillus cereus ATCC 10987] Length = 197 Score = 87.0 bits (214), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 53/194 (27%), Positives = 107/194 (55%), Gaps = 2/194 (1%) Query: 4 MNGYERRKQKKMEQIFSVSFKLFSKYGFQKVSVNEIAQEARVSPATIYNYFGTKEQLYGD 63 MNG+E+ K+KK I +F LFS+ GF +V + IA+EA VS TIYN+FG+K+ L+ + Sbjct: 1 MNGFEKVKEKKKRAIKEAAFLLFSERGFNEVKIEHIAKEANVSQVTIYNHFGSKDALFRE 60 Query: 64 MLIYWMDNQLEQYEQILESSLSFPEKTKEIMLLEVKNLKIISDEFMKAPSAEQVGLERMM 123 ++ ++ ++ + Y+ + L F + +++++ ++ + + + L + + Sbjct: 61 LIQEFIISEFQYYKDLAAEKLPFHDMMQKMIVRKMNTGGLFQPDMLLQMMQRDEELRKFI 120 Query: 124 EQYSEEKVMRFFMKFVALGKQEGYIHLEQTDEMMVMYFTMYKNELGRHWTAS-NEEGTTI 182 Y EK++ ++++ + +Q+ I+ T EMM++Y M+ +LG + A E Sbjct: 121 YSYQNEKILPWYLEILEQAQQKNEINPHLTKEMMLLYIQMF-TKLGDDFGAQLLERDREK 179 Query: 183 NMDQWLKLFFYGLG 196 ++ + +FFYGL Sbjct: 180 HIQDIVTMFFYGLS 193 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.319 0.133 0.382 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 287,144,513 Number of extensions: 10914750 Number of successful extensions: 35009 Number of sequences better than 1.0e-05: 31 Number of HSP's gapped: 35034 Number of HSP's successfully gapped: 31 Length of query: 204 Length of database: 757,237,578 Length adjustment: 120 Effective length of query: 84 Effective length of database: 431,425,698 Effective search space: 36239758632 Effective search space used: 36239758632 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 123 (52.0 bits)