BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0370.0004.p (165 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_833867.1| hypothetical protein [Bacillus cereus ATCC 1457... 120 1e-26 ref|NP_846609.1| conserved hypothetical protein [Bacillus anthra... 107 1e-22 ref|NP_389085.1| yjdF [Bacillus subtilis] >gi|7475114|pir||A6984... 106 2e-22 ref|NP_980521.1| conserved hypothetical protein [Bacillus cereus... 103 1e-21 ref|NP_977312.1| conserved hypothetical protein [Bacillus cereus... 102 4e-21 >ref|NP_833867.1| hypothetical protein [Bacillus cereus ATCC 14579] gb|AAP11068.1| hypothetical protein [Bacillus cereus ATCC 14579] Length = 161 Score = 120 bits (302), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 67/156 (42%), Positives = 92/156 (58%), Gaps = 2/156 (1%) Query: 10 VSSLPPLGMSIVSIQLR-GMDMKLTIYHDGQYWVGVLEDQDQGKLKAVRYIFGAEPKDEE 68 +S P GMS +S L+ G+ M LT+YHDGQ++VG++ ++QGKL RYIFGAEP DEE Sbjct: 1 MSVTFPSGMSRISNLLKEGLSMDLTVYHDGQFFVGIITCKEQGKLYGARYIFGAEPSDEE 60 Query: 69 ILQFIRNKVSELISRLXXXXXXXXXXXXXXXXXRLARQATNEVRRKGVSSYAQEALKLEY 128 +L F+ + E R+ RQA E+ K + AQEA+ L Y Sbjct: 61 VLMFVNGSLLEHFQHFAKCGVEVKEKQRPKNIKRIIRQAAKEINIKRFTK-AQEAISLSY 119 Query: 129 EKRKQERRTGSKQQLEAALARKRELKVLKAKEKHRG 164 E KQE++ SK++ EA R+R +KV KAK+KHRG Sbjct: 120 ELHKQEKKVQSKEKREAEKERRRLMKVQKAKQKHRG 155 >ref|NP_846609.1| conserved hypothetical protein [Bacillus anthracis str. Ames] gb|AAP28095.1| conserved hypothetical protein [Bacillus anthracis str. Ames] Length = 135 Score = 107 bits (266), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 59/137 (43%), Positives = 81/137 (59%), Gaps = 5/137 (3%) Query: 30 MKLTIYHDGQYWVGVLEDQDQGKLKAVRYIFGAEPKDEEILQFIRNKVSELISRLXXXXX 89 M LT+YHDGQ++VG++ +++GKL RYIFGAEP DEE+L F+ + + Sbjct: 1 MDLTVYHDGQFFVGIITCKEKGKLYGARYIFGAEPSDEEVLIFVNGSMLAYFQQFAKCGV 60 Query: 90 XXXXXXXXXXXXRLARQATNEVRRKGVSSY--AQEALKLEYEKRKQERRTGSKQQLEAAL 147 R+ RQA EV VS + AQEA+ L YE KQE++ SK++ EA Sbjct: 61 EVKEKQRPKNIKRIIRQAVKEV---NVSRFTKAQEAISLSYELHKQEKKVQSKEKREAEK 117 Query: 148 ARKRELKVLKAKEKHRG 164 R+R +KV KAK+KHRG Sbjct: 118 QRRRLIKVQKAKQKHRG 134 >ref|NP_389085.1| yjdF [Bacillus subtilis] pir||A69849 hypothetical protein yjdF - Bacillus subtilis emb|CAB13060.1| yjdF [Bacillus subtilis subsp. subtilis str. 168] Length = 160 Score = 106 bits (264), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 61/140 (43%), Positives = 91/140 (65%), Gaps = 1/140 (0%) Query: 27 GMDMKLTIYHDGQYWVGVLEDQDQGKLKAVRYIFGAEPKDEEILQFIRNKVSELISRLXX 86 G+ MKLTIY+DGQ+WVGV+E D GKL+A R++FG EP+D E+L+F+ N++ ++++ Sbjct: 21 GIVMKLTIYYDGQFWVGVVEVVDNGKLRAFRHLFGKEPRDSEVLEFVHNQLLNMMAQAEQ 80 Query: 87 X-XXXXXXXXXXXXXXRLARQATNEVRRKGVSSYAQEALKLEYEKRKQERRTGSKQQLEA 145 RL RQ + E++ GV+S AQEA+KLE E RKQ+++ K+Q E Sbjct: 81 EGVRLQGRRQKKINPKRLQRQVSKELKNAGVTSKAQEAIKLELEARKQKKKQIMKEQREH 140 Query: 146 ALARKRELKVLKAKEKHRGR 165 ++ LK KAK+KHRG+ Sbjct: 141 VKEQRYMLKKQKAKKKHRGK 160 >ref|NP_980521.1| conserved hypothetical protein [Bacillus cereus ATCC 10987] gb|AAS43129.1| conserved hypothetical protein [Bacillus cereus ATCC 10987] Length = 135 Score = 103 bits (258), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 56/135 (41%), Positives = 77/135 (57%), Gaps = 1/135 (0%) Query: 30 MKLTIYHDGQYWVGVLEDQDQGKLKAVRYIFGAEPKDEEILQFIRNKVSELISRLXXXXX 89 M LT+YHDGQ++VG++ +++GKL RYIFG EP DEE+L F+ + Sbjct: 1 MDLTVYHDGQFFVGIITCKEKGKLYGARYIFGTEPSDEEVLIFVNGSMLAYFQHFAKCGV 60 Query: 90 XXXXXXXXXXXXRLARQATNEVRRKGVSSYAQEALKLEYEKRKQERRTGSKQQLEAALAR 149 R+ RQA EV + AQEA+ L YE KQE++ SK++ EA R Sbjct: 61 EVKEKQRPKNIKRIIRQAAKEVNVNRFTK-AQEAISLSYELHKQEKKVQSKEKREAEKQR 119 Query: 150 KRELKVLKAKEKHRG 164 +R +KV KAK+KHRG Sbjct: 120 RRLIKVQKAKQKHRG 134 >ref|NP_977312.1| conserved hypothetical protein [Bacillus cereus ATCC 10987] gb|AAS39920.1| conserved hypothetical protein [Bacillus cereus ATCC 10987] Length = 137 Score = 102 bits (253), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 54/137 (39%), Positives = 84/137 (61%), Gaps = 1/137 (0%) Query: 30 MKLTIYHDGQYWVGVLEDQDQGKLKAVRYIFGAEPKDEEILQFIRNKVSELI-SRLXXXX 88 MKLTIY DGQ+W+G++E + KLK ++ FG+EPKD EIL FI + + L+ S Sbjct: 1 MKLTIYFDGQFWIGIVEMFENNKLKVCKHTFGSEPKDSEILDFIFHDMVPLLKSTSGVKN 60 Query: 89 XXXXXXXXXXXXXRLARQATNEVRRKGVSSYAQEALKLEYEKRKQERRTGSKQQLEAALA 148 RL R A E++ +GVS+ + E L++E E++K+ ++ ++Q+ E L Sbjct: 61 SIDKRKSKIINPKRLIRLAAKEMKNQGVSNKSYEVLRIELEQKKKMKQCITRQKKEELLE 120 Query: 149 RKRELKVLKAKEKHRGR 165 +KR++K+ K K KHRGR Sbjct: 121 KKRQMKIQKRKAKHRGR 137 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.316 0.132 0.356 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 182,128,817 Number of extensions: 5764093 Number of successful extensions: 28128 Number of sequences better than 1.0e-05: 13 Number of HSP's gapped: 28112 Number of HSP's successfully gapped: 13 Length of query: 165 Length of database: 757,237,578 Length adjustment: 116 Effective length of query: 49 Effective length of database: 442,286,094 Effective search space: 21672018606 Effective search space used: 21672018606 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 121 (51.2 bits)