BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0370.0002.p (804 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_843540.1| helicase, UvrD/Rep family [Bacillus anthracis s... 764 0.0 ref|NP_654958.1| UvrD-helicase, UvrD/REP helicase [Bacillus anth... 763 0.0 ref|NP_830827.1| ATP-dependent DNA helicase rep [Bacillus cereus... 762 0.0 ref|NP_979814.1| conserved hypothetical protein [Bacillus cereus... 724 0.0 ref|NP_391225.1| yvgS [Bacillus subtilis] >gi|7475489|pir||H7004... 718 0.0 >ref|NP_843540.1| helicase, UvrD/Rep family [Bacillus anthracis str. Ames] gb|AAP25026.1| helicase, UvrD/Rep family [Bacillus anthracis str. Ames] Length = 776 Score = 764 bits (1974), Expect = 0.0, Method: Compositional matrix adjust. Identities = 385/792 (48%), Positives = 536/792 (67%), Gaps = 28/792 (3%) Query: 13 RLDLVKEKLSSAIVELEPKISQLKDQAADIRKRFWEEVTVNTSTDEDFEETFFTINQQSA 72 RLD V E ++ I +LE + + + + +IRK FW++V VNT T +D+ ET + QQ+ Sbjct: 11 RLDTVIETITQQIDKLENETGRRRAEVINIRKHFWDDVKVNTDTFDDYLETVINLRQQAQ 70 Query: 73 VLSERERSHKRLVQQWKNMNRLLPSPYFGRVDFLEDGQGITEQVYIGVSSFADTDGLSFL 132 L+ + +HK + + R+ +PYFGR+DF E+G+ EQ+YIGV++ D G +FL Sbjct: 71 SLAVTQITHKHTFNRLAALRRMHKAPYFGRIDFKEEGESAAEQIYIGVATLTDASGENFL 130 Query: 133 VYDWRTPIASLYYDYPPGTAAYETPGGRITGTMNLKRQYQIRDGHLQHMFDSSLTIGDEL 192 +YDWR PI+S+YYDYPPG A Y TPGG I G + K QY I++G + MFD+SLTIGDE+ Sbjct: 131 IYDWRAPISSVYYDYPPGPAEYSTPGGVIHGNVEKKLQYIIQNGEIDSMFDTSLTIGDEI 190 Query: 193 LQQVLGGGANAQMKSIVATIQKEQNAIIRNDKSKMLIVQGAAGSGKTSAALQRVAYLLYK 252 LQQ LG G N M+SIVATIQ+EQN IIR+D+ ++LIVQGAAGSGKTSAALQR+AYLLYK Sbjct: 191 LQQALGKGTNKHMQSIVATIQREQNEIIRHDEGRLLIVQGAAGSGKTSAALQRIAYLLYK 250 Query: 253 HRDRLTADQIVLFSPNPMFNSYVSTVLPELGEENMQQTTFQEYLDYWLGSTFRLEDPFDQ 312 +R+ L ADQI+LFSPN MFNSYVS VLPELGEENMQQ TFQEYL++ L +F +EDP++Q Sbjct: 251 YREWLKADQIILFSPNSMFNSYVSNVLPELGEENMQQVTFQEYLNHRLSKSFDVEDPYEQ 310 Query: 313 IEYVLTGQQGPEYKARMNGIQYKASEAYLQALRRYSVWLEREGMRFVSIRFRDRVLISDE 372 +EY+LT P YK R I++KAS + + +R Y LE GM F ++FR ++++S + Sbjct: 311 LEYMLTETNSPAYKTRNASIRFKASTQFFEMIRAYRQSLESSGMLFRGMKFRGKLIVSAK 370 Query: 373 QIKAKFYSYDASIRLANRITLVQKWLLQELARLEKVEQGADWVQEELNYLDGEQYAEVFS 432 +I +FY+ D+S+R +RI + WL +++ +EK E WV+EE+ L ++Y + + Sbjct: 371 EITEQFYNTDSSLRFHSRIEKLTDWLNKQIDAIEKAELKKPWVEEEIELLSKDEYQKAYK 430 Query: 433 MLHKDRGVFDFAEKYARIDEIVRNKPRPDEGDFDFAEREEELLTRMIVKEQFQPLRRNVK 492 L K +G F D+ F E+E +L RMIV+++ +PLR+ V+ Sbjct: 431 YLQK-KGEF-------------------DDNSFQDFEKETRVLGRMIVRKKLKPLRKGVQ 470 Query: 493 QFSFIDMLGLYSQLFSDEAAYREMTDEAEVPEHWPEICVHTKDKLSRNELLYEDATPYLY 552 FI+ G+Y QLF+D + E + W +IC T + L +L YEDATP+L Sbjct: 471 TLRFINFTGIYKQLFTDASW-----GTGEKLKEWDDICSLTVNMLDEGKLYYEDATPFLL 525 Query: 553 LKELVEGTRTNTQVRHIFIDEGQDYSMFQYEFLKRLFPRARMTVLGDFSQAIFTQATNLH 612 LKEL+EG +TN ++H+ +DE QDYS FQ+EFLKRLFP ARMTVLGDF+QAIF A+ Sbjct: 526 LKELIEGFQTNRSIKHVLVDEAQDYSPFQFEFLKRLFPAARMTVLGDFNQAIFAHASETV 585 Query: 613 GIGSPLVRLYGEEETSQFLLVRSYRSTREIVEFTKPLLPGGETIVPFERSGRKPTLTRLE 672 + L LYG +ET+ L RSYRST+ I+EFT+ L+P G+ I FER G KPT+T++ Sbjct: 586 NFDT-LTNLYGPDETNGINLTRSYRSTKPIIEFTRALVPEGKNIHAFERDGEKPTVTKVA 644 Query: 673 SSGRRVERIAADIAALQSEGYTSIAVITKTAAGSTEAYEALAAGGVKELRLITKNTPTFD 732 + ERI A +A LQ + + +IA+I K+AA S AYEAL+ ++ ++L+ N+ ++ Sbjct: 645 NESELHERITAKVAELQKQNHNTIAIICKSAAESAAAYEALSP--IENIKLVKSNSAEYE 702 Query: 733 KGILVIPAYLAKGVEFDAVLIYDASLQSYHRENERKLFYTACTRAMHRLLLYTAEEWTPF 792 +GI+VIPAYLAKG+EFDAV+IYDAS Y+ E+ R+LFYTACTRAMH L LY+ E +PF Sbjct: 703 QGIVVIPAYLAKGIEFDAVIIYDASKDVYNDESVRRLFYTACTRAMHELQLYSVGEVSPF 762 Query: 793 IQAVDTSLYELV 804 I D+ +EL+ Sbjct: 763 IVEADSESFELI 774 >ref|NP_654958.1| UvrD-helicase, UvrD/REP helicase [Bacillus anthracis A2012] Length = 776 Score = 763 bits (1971), Expect = 0.0, Method: Compositional matrix adjust. Identities = 385/792 (48%), Positives = 535/792 (67%), Gaps = 28/792 (3%) Query: 13 RLDLVKEKLSSAIVELEPKISQLKDQAADIRKRFWEEVTVNTSTDEDFEETFFTINQQSA 72 RLD V E ++ I +LE + + + + +IRK FW++V VNT T +D+ ET + QQ+ Sbjct: 11 RLDTVIETITQQIDKLENETGRRRAEVINIRKHFWDDVKVNTDTFDDYLETVINLRQQAQ 70 Query: 73 VLSERERSHKRLVQQWKNMNRLLPSPYFGRVDFLEDGQGITEQVYIGVSSFADTDGLSFL 132 L+ + +HK + + R+ +PYFGR+DF E+G+ EQ+YIGV++ D G +FL Sbjct: 71 SLAVTQITHKHTFNRLAALRRMHKAPYFGRIDFKEEGESAAEQIYIGVATLTDASGENFL 130 Query: 133 VYDWRTPIASLYYDYPPGTAAYETPGGRITGTMNLKRQYQIRDGHLQHMFDSSLTIGDEL 192 +YDWR PI+S+YYDYPPG A Y TPGG I G + K QY I++G + MFD+SLTIGDE+ Sbjct: 131 IYDWRAPISSVYYDYPPGPAEYSTPGGVIHGNVEKKLQYIIQNGEIDSMFDTSLTIGDEI 190 Query: 193 LQQVLGGGANAQMKSIVATIQKEQNAIIRNDKSKMLIVQGAAGSGKTSAALQRVAYLLYK 252 LQQ LG G N M+SIVATIQ+EQN IIR+D+ ++LIVQGAAGSGKTSAALQR+AYLLYK Sbjct: 191 LQQALGKGTNKHMQSIVATIQREQNEIIRHDEGRLLIVQGAAGSGKTSAALQRIAYLLYK 250 Query: 253 HRDRLTADQIVLFSPNPMFNSYVSTVLPELGEENMQQTTFQEYLDYWLGSTFRLEDPFDQ 312 +R+ L ADQI+LFSPN MFNSYVS VLPELGEENMQQ TFQEYL++ L +F +EDP++Q Sbjct: 251 YREWLKADQIILFSPNSMFNSYVSNVLPELGEENMQQVTFQEYLNHRLSKSFDVEDPYEQ 310 Query: 313 IEYVLTGQQGPEYKARMNGIQYKASEAYLQALRRYSVWLEREGMRFVSIRFRDRVLISDE 372 +EY+LT P YK R I++KAS + + +R Y LE GM F ++FR ++++S + Sbjct: 311 LEYMLTETNSPAYKTRNASIRFKASTQFFEMIRAYRQSLESSGMLFRGMKFRGKLIVSAK 370 Query: 373 QIKAKFYSYDASIRLANRITLVQKWLLQELARLEKVEQGADWVQEELNYLDGEQYAEVFS 432 +I +FY+ D+S+R +RI + WL +++ +EK E WV+EE+ L ++Y + + Sbjct: 371 EITEQFYNTDSSLRFHSRIEKLTDWLNKQIDAIEKAELKKPWVEEEIELLSKDEYQKAYK 430 Query: 433 MLHKDRGVFDFAEKYARIDEIVRNKPRPDEGDFDFAEREEELLTRMIVKEQFQPLRRNVK 492 L K +G F D+ F E+E +L RMIV+++ +PLR+ V+ Sbjct: 431 YLQK-KGEF-------------------DDNSFQDFEKETRVLGRMIVRKKLKPLRKGVQ 470 Query: 493 QFSFIDMLGLYSQLFSDEAAYREMTDEAEVPEHWPEICVHTKDKLSRNELLYEDATPYLY 552 FI+ G+Y QLF+D + E + W +IC T + L +L YEDATP+L Sbjct: 471 TLRFINFTGIYKQLFTDASW-----GTGEKLKEWDDICSLTVNMLDEGKLYYEDATPFLL 525 Query: 553 LKELVEGTRTNTQVRHIFIDEGQDYSMFQYEFLKRLFPRARMTVLGDFSQAIFTQATNLH 612 LKEL+EG +TN ++H+ +DE QDYS FQ+EFLKRLFP ARMTVLGDF QAIF A+ Sbjct: 526 LKELIEGFQTNRSIKHVLVDEAQDYSPFQFEFLKRLFPAARMTVLGDFXQAIFAHASETV 585 Query: 613 GIGSPLVRLYGEEETSQFLLVRSYRSTREIVEFTKPLLPGGETIVPFERSGRKPTLTRLE 672 + L LYG +ET+ L RSYRST+ I+EFT+ L+P G+ I FER G KPT+T++ Sbjct: 586 NFDT-LTNLYGPDETNGINLTRSYRSTKPIIEFTRALVPEGKNIHAFERDGEKPTVTKVA 644 Query: 673 SSGRRVERIAADIAALQSEGYTSIAVITKTAAGSTEAYEALAAGGVKELRLITKNTPTFD 732 + ERI A +A LQ + + +IA+I K+AA S AYEAL+ ++ ++L+ N+ ++ Sbjct: 645 NESELHERITAKVAELQKQNHNTIAIICKSAAESAAAYEALSP--IENIKLVKSNSAEYE 702 Query: 733 KGILVIPAYLAKGVEFDAVLIYDASLQSYHRENERKLFYTACTRAMHRLLLYTAEEWTPF 792 +GI+VIPAYLAKG+EFDAV+IYDAS Y+ E+ R+LFYTACTRAMH L LY+ E +PF Sbjct: 703 QGIVVIPAYLAKGIEFDAVIIYDASKDVYNDESVRRLFYTACTRAMHELQLYSVGEVSPF 762 Query: 793 IQAVDTSLYELV 804 I D+ +EL+ Sbjct: 763 IVEADSESFELI 774 >ref|NP_830827.1| ATP-dependent DNA helicase rep [Bacillus cereus ATCC 14579] gb|AAP08028.1| ATP-dependent DNA helicase rep [Bacillus cereus ATCC 14579] Length = 777 Score = 762 bits (1968), Expect = 0.0, Method: Compositional matrix adjust. Identities = 384/792 (48%), Positives = 534/792 (67%), Gaps = 28/792 (3%) Query: 13 RLDLVKEKLSSAIVELEPKISQLKDQAADIRKRFWEEVTVNTSTDEDFEETFFTINQQSA 72 RLD V E ++ I +LE + + + + +IRK FW++V VNT T +D+ ET + QQ+ Sbjct: 11 RLDTVIETITEQIDKLENETGRRRAEVINIRKHFWDDVKVNTDTFDDYLETVINLRQQAQ 70 Query: 73 VLSERERSHKRLVQQWKNMNRLLPSPYFGRVDFLEDGQGITEQVYIGVSSFADTDGLSFL 132 L+ + +HK + + R+ +PYFGR+DF E+G+ EQ+YIGV++ D G +FL Sbjct: 71 SLAVTQITHKHTFNRLAALRRMHKAPYFGRIDFKEEGEPSAEQIYIGVATLTDASGENFL 130 Query: 133 VYDWRTPIASLYYDYPPGTAAYETPGGRITGTMNLKRQYQIRDGHLQHMFDSSLTIGDEL 192 +YDWR PI+S+YYDYPPG A Y TP G I G + K QY I++G + MFD+SLTIGDE+ Sbjct: 131 IYDWRAPISSVYYDYPPGPAEYSTPEGVIHGNVEKKLQYIIQNGEIDSMFDTSLTIGDEI 190 Query: 193 LQQVLGGGANAQMKSIVATIQKEQNAIIRNDKSKMLIVQGAAGSGKTSAALQRVAYLLYK 252 LQQ LG G N M+SIVATIQ+EQN IIR+D+ ++LIVQGAAGSGKTSAALQR+AYLLYK Sbjct: 191 LQQALGKGTNKHMQSIVATIQREQNEIIRHDEGRLLIVQGAAGSGKTSAALQRIAYLLYK 250 Query: 253 HRDRLTADQIVLFSPNPMFNSYVSTVLPELGEENMQQTTFQEYLDYWLGSTFRLEDPFDQ 312 +R+ L ADQI+LFSPN MFNSYVS VLPELGEENMQQ TFQEYL++ L +F +EDP++Q Sbjct: 251 YREWLKADQIILFSPNSMFNSYVSNVLPELGEENMQQVTFQEYLNHRLSKSFDVEDPYEQ 310 Query: 313 IEYVLTGQQGPEYKARMNGIQYKASEAYLQALRRYSVWLEREGMRFVSIRFRDRVLISDE 372 +EY+LT P YK R I++KAS + + +R Y LE GM F ++FR +++ S + Sbjct: 311 LEYMLTETNSPTYKTRNASIRFKASTQFFEMIRAYRQSLESSGMLFRGMKFRGKLIASAK 370 Query: 373 QIKAKFYSYDASIRLANRITLVQKWLLQELARLEKVEQGADWVQEELNYLDGEQYAEVFS 432 +I +FY+ D+S+R +RI + WL +++ LEK E WV+EE+ L ++Y + + Sbjct: 371 EITEQFYNTDSSLRFHSRIEKLTDWLNKQIDALEKAELKKPWVEEEIELLSKDEYQKAYK 430 Query: 433 MLHKDRGVFDFAEKYARIDEIVRNKPRPDEGDFDFAEREEELLTRMIVKEQFQPLRRNVK 492 L K +G F D+ F E+E +L RMIV+++ +PLR+ V+ Sbjct: 431 YLQK-KGEF-------------------DDNSFQDFEKETRVLGRMIVRKKMKPLRKGVQ 470 Query: 493 QFSFIDMLGLYSQLFSDEAAYREMTDEAEVPEHWPEICVHTKDKLSRNELLYEDATPYLY 552 FI+ G+Y QLF+D + E P+ W +IC T + L +L YEDATP+L Sbjct: 471 TLRFINFTGIYKQLFTDASWV-----PGEKPKEWDDICSLTVNMLDEGKLYYEDATPFLL 525 Query: 553 LKELVEGTRTNTQVRHIFIDEGQDYSMFQYEFLKRLFPRARMTVLGDFSQAIFTQATNLH 612 LKEL+EG +TN ++H+ +DE QDYS FQ+EFLKRLFP ARMTVLGDF+QAIF A+ Sbjct: 526 LKELIEGFQTNRSIKHVLVDEAQDYSPFQFEFLKRLFPAARMTVLGDFNQAIFAHASETV 585 Query: 613 GIGSPLVRLYGEEETSQFLLVRSYRSTREIVEFTKPLLPGGETIVPFERSGRKPTLTRLE 672 + L LYG +ET+ L RSYRST+ I+EFT+ L+P G+ I FER G KPT+T++ Sbjct: 586 NFDT-LTNLYGPDETNGINLTRSYRSTKPIIEFTRALVPEGKNIHAFERDGAKPTVTKVA 644 Query: 673 SSGRRVERIAADIAALQSEGYTSIAVITKTAAGSTEAYEALAAGGVKELRLITKNTPTFD 732 + E I A +AALQ+E + +IA+I K+AA S AYE L++ +++++L+ + ++ Sbjct: 645 NHNELHEHITAKVAALQTEQHNTIAIICKSAAESAAAYEELSS--IEDIKLVKSTSAEYE 702 Query: 733 KGILVIPAYLAKGVEFDAVLIYDASLQSYHRENERKLFYTACTRAMHRLLLYTAEEWTPF 792 +GI+VIPAYLAKG+EFDAV+IYDAS Y E+ R+LFYTACTRAMH L LY E +PF Sbjct: 703 QGIVVIPAYLAKGIEFDAVIIYDASKDVYSNESVRRLFYTACTRAMHELHLYCVGEVSPF 762 Query: 793 IQAVDTSLYELV 804 + D+ +EL+ Sbjct: 763 VLGADSDSFELI 774 >ref|NP_979814.1| conserved hypothetical protein [Bacillus cereus ATCC 10987] gb|AAS42422.1| conserved hypothetical protein [Bacillus cereus ATCC 10987] Length = 768 Score = 724 bits (1868), Expect = 0.0, Method: Compositional matrix adjust. Identities = 362/789 (45%), Positives = 511/789 (64%), Gaps = 35/789 (4%) Query: 13 RLDLVKEKLSSAIVELEPKISQLKDQAADIRKRFWEEVTVNTSTDEDFEETFFTINQQSA 72 R+++V EK+ + EL+ ++ +K + IRK FWE+V VN ++ ET +I Q++ Sbjct: 10 RVNIVIEKVDEELKELDGRVGSVKSEIVSIRKNFWEDVKVNIDNIKEAVETAASIRQEAE 69 Query: 73 VLSERERSHKRLVQQWKNMNRLLPSPYFGRVDFLEDGQGITEQVYIGVSSFADTDGLSFL 132 +L+ERE +H+ ++ + ++ +PYFGR+DF ED + +++YIG+ SF D + FL Sbjct: 70 LLAEREHTHRHTKNEYNLLMKIKETPYFGRIDFKEDDEADADEMYIGIGSFYDKENDEFL 129 Query: 133 VYDWRTPIASLYYDYPPGTAAYETPGGRITGTMNLKRQYQIRDGHLQHMFDSSLTIGDEL 192 VYDWR PI+SLYYDY G A Y+ P G I+G + LKRQY IR+G +Q MFD+ +TIGDEL Sbjct: 130 VYDWRAPISSLYYDYTLGRAQYKAPIGTISGDLLLKRQYMIRNGTIQSMFDTGVTIGDEL 189 Query: 193 LQQVLGGGANAQMKSIVATIQKEQNAIIRNDKSKMLIVQGAAGSGKTSAALQRVAYLLYK 252 LQ+ LG A+ QMKSIV TIQ+EQN IIRNDKS +LIVQG AGSGKTSAALQRVAYLLY Sbjct: 190 LQEALGRNASEQMKSIVTTIQREQNQIIRNDKSDVLIVQGTAGSGKTSAALQRVAYLLYH 249 Query: 253 HRDRLTADQIVLFSPNPMFNSYVSTVLPELGEENMQQTTFQEYLDYWLGSTFRLEDPFDQ 312 +R + ADQ++LFSPN +FNSY++ VLPELGEENMQQTTFQ Y+++ +G +F +ED F Q Sbjct: 250 YRGTVYADQMLLFSPNELFNSYIANVLPELGEENMQQTTFQAYVEHVIGKSFTVEDSFAQ 309 Query: 313 IEYVLTGQQGPEYKARMNGIQYKASEAYLQALRRYSVWLEREGMRFVSIRFRDRVLISDE 372 +EYVLT + Y+ R+ GIQYK+S ++ L +Y+ L +G+ F + + VLI + Sbjct: 310 LEYVLTKKHESTYETRVKGIQYKSSVEFMGLLEKYAKSLGEKGLHFHDVTCKSEVLIKAK 369 Query: 373 QIKAKFYSYDASIRLANRITLVQKWLLQELARLEKVEQGADWVQEELNYLDGEQYAEVFS 432 I FYS D SI + NR+ L +W+L++L EK+E DWV+ E+ YL+ E Y ++ Sbjct: 370 SICDYFYSLDMSIAIPNRMQLTMEWVLRKLNDFEKIEAKKDWVEREVQYLNKEDYNRIYE 429 Query: 433 MLHKDRGVFDFAEKYARIDEIVRNKPRPDEGDFDFAEREEELLTRMIVKEQFQPLRRNVK 492 + KD FD+ E+E ELLT+ +VK+ F+ LRR VK Sbjct: 430 KIEKD-------------------------NQFDYYEKEHELLTKYVVKKHFRSLRRKVK 464 Query: 493 QFSFIDMLGLYSQLFSDEAAYREMTDEAEVPEHWPEICVHTKDKLSRNELLYEDATPYLY 552 +F+F++ ++ QLF E+ +++ VP+ W +IC T +L +L ED TPYL+ Sbjct: 465 KFAFVNHPAIFEQLF--ESKQKDIF----VPDCWEDICKQTVKRLKDKQLANEDVTPYLF 518 Query: 553 LKELVEGTRTNTQVRHIFIDEGQDYSMFQYEFLKRLFPRARMTVLGDFSQAIFTQATNLH 612 LKEL+EG +TN V+ +FIDE QDY+ FQ FLKRLFP+A+ T+LGD +Q IF+ N Sbjct: 519 LKELLEGFKTNHLVKFVFIDEVQDYTSFQLAFLKRLFPKAKWTLLGDLNQNIFSHDYNRE 578 Query: 613 GIGSPLVRLYGEEETSQFLLVRSYRSTREIVEFTKPLLPGGETIVPFERSGRKPTLTRLE 672 + + L+ + L RSYRST+ I+EFTK ++P G I F R G+KP ++ Sbjct: 579 --NNFISALFANRKVETVQLNRSYRSTKPIIEFTKCMIPNGNDIEAFNRDGKKPVYIKVS 636 Query: 673 SSGRRVERIAADIAALQSEGYTSIAVITKTAAGSTEAYEALAAGGVKELRLITKNTPTFD 732 VE + + L+ +G+ +IAVI KT + E + G + L+ K T++ Sbjct: 637 DEREHVENMIFKVKELEEKGHKTIAVICKTNEECMKVMELI--GNTLHVHLMKKENTTYE 694 Query: 733 KGILVIPAYLAKGVEFDAVLIYDASLQSYHRENERKLFYTACTRAMHRLLLYTAEEWTPF 792 KG++VIPAYLAKG+EFDAV+I+DAS +SY+RE+ER LFYTACTRAMH L +Y A E T F Sbjct: 695 KGVVVIPAYLAKGIEFDAVIIFDASHESYYRESERNLFYTACTRAMHELYVYYAGELTEF 754 Query: 793 IQAVDTSLY 801 + V LY Sbjct: 755 LTHVPEELY 763 >ref|NP_391225.1| yvgS [Bacillus subtilis] pir||H70040 hypothetical protein yvgS - Bacillus subtilis emb|CAB15350.1| yvgS [Bacillus subtilis subsp. subtilis str. 168] Length = 774 Score = 718 bits (1854), Expect = 0.0, Method: Compositional matrix adjust. Identities = 371/793 (46%), Positives = 517/793 (65%), Gaps = 34/793 (4%) Query: 13 RLDLVKEKLSSAIVELEPKISQLKDQAADIRKRFWEEVTVNTSTDEDFEETFFTINQQSA 72 R+D V ++L LE LK +RK FWE+V VN + ET +I QQ+ Sbjct: 14 RIDEVLKELEKKERFLETSAGGLKHDIIGLRKSFWEDVKVNFDDAHEAIETMASIKQQAE 73 Query: 73 VLSERERSHKRLVQQWKNMNRLLPSPYFGRVDFLEDGQGITEQVYIGVSSFADTDGLSFL 132 +LS+RE +H+R+ QQ K +++L SPYFGR+DF+E+G+ E++YIG++S D FL Sbjct: 74 LLSDREHNHRRMDQQLKRIHQLKKSPYFGRIDFIENGEEQAERIYIGLASCLDEKEEHFL 133 Query: 133 VYDWRTPIASLYYDYPPGTAAYETPGGRITGTMNLKRQYQIRDGHLQHMFDSSLTIGDEL 192 +YDWR PI+SLYY+Y PG A YE PG I G M LKRQ+ I++G L+ MF++ +TIGDE+ Sbjct: 134 IYDWRAPISSLYYNYSPGKAEYEVPGETIEGEMVLKRQFMIKNGTLKAMFNTDMTIGDEM 193 Query: 193 LQQVLGGGANAQMKSIVATIQKEQNAIIRNDKSKMLIVQGAAGSGKTSAALQRVAYLLYK 252 LQ+VL ++ QMK+IV+TIQKEQN IIRN+KSK+LIVQGAAGSGKTSAALQRVAYLLY+ Sbjct: 194 LQEVLSHHSDTQMKNIVSTIQKEQNQIIRNEKSKILIVQGAAGSGKTSAALQRVAYLLYR 253 Query: 253 HRDRLTADQIVLFSPNPMFNSYVSTVLPELGEENMQQTTFQEYLDYWLGSTFRLEDPFDQ 312 HR + A QIVLFSPN +FNSYVS+VLPELGEENM+Q TFQEY+++ LG F+ E PFDQ Sbjct: 254 HRGVIDAGQIVLFSPNFLFNSYVSSVLPELGEENMEQATFQEYIEHRLGRKFKCESPFDQ 313 Query: 313 IEYVLTGQQGPEYKARMNGIQYKASEAYLQALRRYSVWLEREGMRFVSIRFRDRVLISDE 372 +EY LT +G ++ R+ GI +KA ++ Q + Y L EGM F +I FR + LI+ E Sbjct: 314 LEYCLTETKGGDFPTRLAGITWKAGLSFQQFINEYVTRLSSEGMIFKNIIFRGQKLITKE 373 Query: 373 QIKAKFYSYDASIRLANRITLVQKWLLQELARLEKVEQGADWVQEELNYLDGEQYAEVFS 432 QI++ FYS D + + NR+ KWLL EL +LEK E+ DWV E LD E Y +V+ Sbjct: 374 QIQSYFYSLDQNHSIPNRMEQTAKWLLSELNKLEKKERRKDWVVHEAELLDKEDYLDVYK 433 Query: 433 MLHKDRGVFDFAEKYARIDEIVRNKPRPDEGDFDFAEREEELLTRMIVKEQFQPLRRNVK 492 L + + R E F+ +RE++LL +IVK+ F+PL++ V+ Sbjct: 434 KL--------------------QERKRFSESTFNDYQREQQLLAAIIVKKAFKPLKQAVR 473 Query: 493 QFSFIDMLGLYSQLFSDEAAYREMTDEAEVPEHWPEICVHTKDKLSRNELLYEDATPYLY 552 +F+D+ LY QLFS + E I T+ + N+LLYEDA P+LY Sbjct: 474 LLAFLDVTQLYLQLFSGWGGKFQH-------EKMDAIGELTRSAFTDNKLLYEDAAPFLY 526 Query: 553 LKELVEGTRTNTQVRHIFIDEGQDYSMFQYEFLKRLFPRARMTVLGDFSQAIFTQATNLH 612 +++L+EG + NT+++H+FIDE QDYS FQ +++ +FP A MTVLGD +Q+I+ N Sbjct: 527 MQDLIEGRKKNTKIKHLFIDEAQDYSPFQMAYMRSIFPAASMTVLGDINQSIYAHTIN-- 584 Query: 613 GIGSPLVRLYGEEETSQFL-LVRSYRSTREIVEFTKPLLPGGETIVPFERSGRKPTLTRL 671 G + E+E ++++ L R+YRSTR+IVEFTK +L G I PF RSG P + + Sbjct: 585 --GDQRMDACFEDEPAEYVRLKRTYRSTRQIVEFTKAMLQDGADIEPFNRSGEMPLVVKT 642 Query: 672 ESSGRRVERIAADIAALQSEGYTSIAVITKTAAGSTEAYEALAAGGVKELRLITKNTPTF 731 E +++A +I L+ +G+ +IAVI KTA +A+ ++ ++RLI K F Sbjct: 643 EGHESLCQKLAQEIGRLKKKGHETIAVICKTAHQCIQAHAHMSE--YTDVRLIHKENQPF 700 Query: 732 DKGILVIPAYLAKGVEFDAVLIYDASLQSYHRENERKLFYTACTRAMHRLLLYTAEEWTP 791 KG+ VIP YLAKG+EFDAVL+YDAS + YH E++R+L YTACTRAMH L ++ E +P Sbjct: 701 QKGVCVIPVYLAKGIEFDAVLVYDASEEHYHTEHDRRLLYTACTRAMHMLAVFYTGEASP 760 Query: 792 FIQAVDTSLYELV 804 F+ AV LY++ Sbjct: 761 FVTAVPPHLYQIA 773 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.319 0.135 0.387 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 1,137,818,017 Number of extensions: 48222940 Number of successful extensions: 136613 Number of sequences better than 1.0e-05: 65 Number of HSP's gapped: 136482 Number of HSP's successfully gapped: 78 Length of query: 804 Length of database: 757,237,578 Length adjustment: 134 Effective length of query: 670 Effective length of database: 393,414,312 Effective search space: 263587589040 Effective search space used: 263587589040 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 130 (54.7 bits)