BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0370.0001.p (160 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_847347.1| conserved hypothetical protein [Bacillus anthra... 132 4e-30 ref|NP_653396.1| hypothetical protein predicted by GeneMark [Bac... 128 4e-29 ref|NP_834600.1| DNA-binding protein YobU [Bacillus cereus ATCC ... 128 4e-29 ref|NP_981359.1| conserved hypothetical protein [Bacillus cereus... 124 9e-28 ref|NP_967767.1| transcriptional regulator, AraC family [Bdellov... 109 2e-23 >ref|NP_847347.1| conserved hypothetical protein [Bacillus anthracis str. Ames] gb|AAP28833.1| conserved hypothetical protein [Bacillus anthracis str. Ames] Length = 159 Score = 132 bits (331), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 68/155 (43%), Positives = 94/155 (60%), Gaps = 5/155 (3%) Query: 6 VHKQNLIITGVAVRTTNAEEAGPEGRLPKLWETYFQSNLLSAAGGENPHFIYAVYTDYES 65 V K+ G+++ TTN +EA EG++P LW YFQ ++ + +A Y++YES Sbjct: 8 VKKEAFQAIGISITTTNEKEASTEGKIPGLWNRYFQEQIMHHIPNQQTKETFAFYSNYES 67 Query: 66 DANGAYTVVIGHE-SSDKPVPDDKNHVVVAVPGSKYRVFTTKKGPVYEVVAQAWREIWAY 124 D G YT IG SS + VP+ ++ +P + Y VFTT+KGPV EVV +AW IW + Sbjct: 68 DETGTYTFTIGMPVSSLEDVPETMTTLI--IPAATYAVFTTRKGPVAEVVCEAWEYIWKW 125 Query: 125 FGESTEKRAYTGDFELYDARDFDPANTELQIYIAI 159 E+ KRA+T DFELYD R DP N +L IYIA+ Sbjct: 126 SKEN--KRAFTIDFELYDERALDPTNVQLDIYIAL 158 >ref|NP_653396.1| hypothetical protein predicted by GeneMark [Bacillus anthracis A2012] Length = 159 Score = 128 bits (322), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 67/155 (43%), Positives = 92/155 (59%), Gaps = 5/155 (3%) Query: 6 VHKQNLIITGVAVRTTNAEEAGPEGRLPKLWETYFQSNLLSAAGGENPHFIYAVYTDYES 65 V K+ G+++ TTN +EA EG++P LW YFQ ++ + +A Y++YES Sbjct: 8 VKKEAFQAIGISITTTNEKEASTEGKIPGLWNRYFQEQIMHHIPNQQTKETFAFYSNYES 67 Query: 66 DANGAYTVVIGHE-SSDKPVPDDKNHVVVAVPGSKYRVFTTKKGPVYEVVAQAWREIWAY 124 D G YT G SS + VP+ + +P + Y VFTT+KGPV EVV +AW IW + Sbjct: 68 DETGTYTFTXGMPVSSLEDVPETMTTXI--IPAATYAVFTTRKGPVAEVVCEAWEYIWKW 125 Query: 125 FGESTEKRAYTGDFELYDARDFDPANTELQIYIAI 159 E+ KRA+T DFELYD R DP N +L IYIA+ Sbjct: 126 SKEN--KRAFTIDFELYDERALDPTNVQLDIYIAL 158 >ref|NP_834600.1| DNA-binding protein YobU [Bacillus cereus ATCC 14579] gb|AAP11801.1| DNA-binding protein YobU [Bacillus cereus ATCC 14579] Length = 159 Score = 128 bits (322), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 67/155 (43%), Positives = 93/155 (60%), Gaps = 5/155 (3%) Query: 6 VHKQNLIITGVAVRTTNAEEAGPEGRLPKLWETYFQSNLLSAAGGENPHFIYAVYTDYES 65 + K+ GV+V TTN EA +G++ +LW YFQ ++ + +A Y++YES Sbjct: 8 MKKEAFQAIGVSVTTTNEREASTKGKISELWNRYFQEQMMHHIPNKKTKATFAFYSNYES 67 Query: 66 DANGAYTVVIGHE-SSDKPVPDDKNHVVVAVPGSKYRVFTTKKGPVYEVVAQAWREIWAY 124 D G YT IG SS + VP+ N + +P + Y VFTT+KGPV EVV +AW IW + Sbjct: 68 DETGTYTFTIGTTVSSLEDVPE--NMTTLTIPAATYAVFTTRKGPVAEVVCEAWEYIWQW 125 Query: 125 FGESTEKRAYTGDFELYDARDFDPANTELQIYIAI 159 E+ KRA+T DFELYD R DP + +L IYIA+ Sbjct: 126 SKEN--KRAFTTDFELYDERALDPNHAQLDIYIAL 158 >ref|NP_981359.1| conserved hypothetical protein [Bacillus cereus ATCC 10987] gb|AAS43967.1| conserved hypothetical protein [Bacillus cereus ATCC 10987] Length = 158 Score = 124 bits (310), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 65/155 (41%), Positives = 90/155 (58%), Gaps = 5/155 (3%) Query: 6 VHKQNLIITGVAVRTTNAEEAGPEGRLPKLWETYFQSNLLSAAGGENPHFIYAVYTDYES 65 V K+ G+++ TTN +EA EG++P LW YF ++ + +A Y++YES Sbjct: 7 VKKEAFQAIGISITTTNEKEASTEGKIPGLWNRYFHEQIMHHIPNQQTKETFAFYSNYES 66 Query: 66 DANGAYTVVIGHE-SSDKPVPDDKNHVVVAVPGSKYRVFTTKKGPVYEVVAQAWREIWAY 124 D G Y IG SS + VP+ N + +P + Y VFTT+KGPV EVV +AW IW + Sbjct: 67 DETGTYQFTIGMPVSSLEDVPE--NMTTLTIPAATYAVFTTRKGPVAEVVCEAWEYIWKW 124 Query: 125 FGESTEKRAYTGDFELYDARDFDPANTELQIYIAI 159 KRA+T DFELYD + DP N +L IYIA+ Sbjct: 125 --SKGNKRAFTIDFELYDEKATDPNNAQLDIYIAL 157 >ref|NP_967767.1| transcriptional regulator, AraC family [Bdellovibrio bacteriovorus HD100] emb|CAE78760.1| transcriptional regulator, AraC family [Bdellovibrio bacteriovorus] Length = 161 Score = 109 bits (273), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 59/165 (35%), Positives = 92/165 (55%), Gaps = 9/165 (5%) Query: 1 MNTYTVHKQNLIITGVAVRTTNAEEAGPEGRLPKLWETYFQSNLLSAAG---GENPHFIY 57 M K ++ I G++VRT+N E G++ W+ +F ++ E P IY Sbjct: 1 MTHSFTQKADIKIVGISVRTSNGAEMKGSGKIGAHWQKFFSDGVMQKIPNQIAEGP--IY 58 Query: 58 AVYTDYESDANGAYTVVIGHE-SSDKPVPDDKNHVVVAVPGSKYRVFTTKKGPVYEVVAQ 116 A+YTDYESD NG Y+ V+G E SS +PD + +P S+Y FT+K+G + VV + Sbjct: 59 AIYTDYESDVNGEYSFVLGKEVSSFDNLPD--GLISKVLPASRYAAFTSKQGQMPNVVIE 116 Query: 117 AWREIWAYF-GESTEKRAYTGDFELYDARDFDPANTELQIYIAIR 160 W+ IW + +RAY DFE+YD R DP N ++ +++++R Sbjct: 117 LWQHIWGLSPADLGAERAYEADFEVYDQRSADPQNCQVDVFLSVR 161 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.315 0.133 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 262,796,360 Number of extensions: 10646443 Number of successful extensions: 20744 Number of sequences better than 1.0e-05: 21 Number of HSP's gapped: 20715 Number of HSP's successfully gapped: 21 Length of query: 160 Length of database: 757,237,578 Length adjustment: 115 Effective length of query: 45 Effective length of database: 445,001,193 Effective search space: 20025053685 Effective search space used: 20025053685 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 120 (50.8 bits)