BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0369.0028.p (200 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_012318.1| Hypothetical ORF; Yjl217wp [Saccharomyces cerev... 121 8e-27 ref|NP_642470.1| conserved hypothetical protein [Xanthomonas axo... 118 9e-26 ref|ZP_00127398.1| COG3506: Uncharacterized conserved protein [P... 117 1e-25 ref|NP_105933.1| hypothetical protein mlr5237 [Mesorhizobium lot... 112 4e-24 ref|NP_793833.1| conserved hypothetical protein [Pseudomonas syr... 110 2e-23 >ref|NP_012318.1| Hypothetical ORF; Yjl217wp [Saccharomyces cerevisiae] sp|P40893|YJV7_YEAST HYPOTHETICAL 22.0 KD PROTEIN IN HXT11-HXT8 INTERGENIC REGION pir||S50710 hypothetical protein YJL217w - yeast (Saccharomyces cerevisiae) emb|CAA83993.1| ORF [Saccharomyces cerevisiae] emb|CAA89514.1| unnamed protein product [Saccharomyces cerevisiae] gb|AAS56580.1| YJL217W [Saccharomyces cerevisiae] Length = 198 Score = 121 bits (304), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 70/191 (36%), Positives = 97/191 (50%), Gaps = 10/191 (5%) Query: 3 KTVNWQSGVWSNEPVSAKVLDGAFIVEAAEGSDYWEQTMYGFQHDNGHALLASWEDSEAV 62 K G W N+P S G +E E +D+W +T YGF D+GH L E A Sbjct: 5 KNTELSQGTWLNKPKSVFQEAGKVTLETDEKTDFWRETFYGFTRDSGHFL--GVETGSAF 62 Query: 63 EVSFSLQG-FTELYDQAGIMLWHSSTEWIKAGIELNDGVPHIGAVVTDGYSDWSLSPVPE 121 +QG + LYDQAGIM+ W+KAGIE++DG + +V+T+G SDWS + Sbjct: 63 TAQVRVQGSYESLYDQAGIMVRIDDGHWLKAGIEISDGHAMLSSVLTNGKSDWSTAVY-- 120 Query: 122 WTGGVVT---IRASRLNDAVVIRARADNHPWRTIRVARFPYETGKKAGPFVCAPTRAGLQ 178 GG +R + + I+ +D W +R+A FP GP C P R GL+ Sbjct: 121 --GGNARDFWLRVTVEKGVLRIQVSSDKKTWPLVRLAPFPTSDHYLVGPMACTPERGGLK 178 Query: 179 VTFTRWAYTAP 189 VTF+ W+ TAP Sbjct: 179 VTFSEWSLTAP 189 >ref|NP_642470.1| conserved hypothetical protein [Xanthomonas axonopodis pv. citri str. 306] gb|AAM37006.1| conserved hypothetical protein [Xanthomonas axonopodis pv. citri str. 306] Length = 196 Score = 118 bits (295), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 67/190 (35%), Positives = 99/190 (52%), Gaps = 3/190 (1%) Query: 6 NWQSGVWSNEPVSAKVLDGAFIVEAAEGSDYWEQTMYGFQHDNGHALLASWEDSEAVEVS 65 +W +G W N P + + V + +D+W +T YGF D+GH L ++ Sbjct: 6 SWHAGTWLNRPKTLAINGDTLDVVTDQATDFWRKTHYGFTRDSGHFLGIRAGAGFTAQLR 65 Query: 66 FSLQGFTELYDQAGIMLWHSSTEWIKAGIELNDGVPHIGAVVTDGYSDWSLSPVPEWTGG 125 Q + LYDQAGIM+ W+KAGIEL+DG + +V+T+ SDW+ P E Sbjct: 66 ARAQ-YEALYDQAGIMVRVDEQHWVKAGIELSDGRAMLSSVLTNPVSDWATGPY-EADPK 123 Query: 126 VVTIRASRLNDAVVIRARADNHPWRTIRVARFPYETGKKAGPFVCAPTRAGLQVTFTRWA 185 IRA+ + + ++ AD W +R+ FP + GP C P RAGL+V F+ WA Sbjct: 124 DFWIRATVADGVLRLQVSADGRRWPLVRLCPFPPASVYLVGPMCCTPERAGLKVRFSDWA 183 Query: 186 YTAP-DKDIH 194 +AP KD+H Sbjct: 184 LSAPLAKDLH 193 >ref|ZP_00127398.1| COG3506: Uncharacterized conserved protein [Pseudomonas syringae pv. syringae B728a] Length = 205 Score = 117 bits (294), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 67/190 (35%), Positives = 99/190 (52%), Gaps = 5/190 (2%) Query: 7 WQSGVWSNEPVSAKVLDGAFIVEAAEGSDYWEQTMYGFQHDNGHALLASWEDSEAVEVSF 66 + G+W N+P V D V +D+W+QT YGF D GH L S +V Sbjct: 16 FDKGIWLNQPRHCSVTDERLTVTTDPQTDFWQQTHYGFCRDTGHFLGVSVTGDFTAQVH- 74 Query: 67 SLQG-FTELYDQAGIMLWHSSTEWIKAGIELNDGVPHIGAVVTDGYSDWSLSPVPEWTGG 125 +QG F LYDQAG+M+ W+K G+E++DG +G+V+T G SDW+ E + G Sbjct: 75 -VQGDFKTLYDQAGLMVRIDERNWVKTGVEVSDGALMLGSVLTCGQSDWATGVFDESSSG 133 Query: 126 VVTIRASRLNDAVVIRARADNHPWRTIRVARFPYETGKKAGPFVCAPTRAGLQVTFTRW- 184 + +R + + I+ +D W +R+A FP K GP C+P R GL+V F+ + Sbjct: 134 -LWLRVTVAKGVLRIQHSSDGLRWPLLRLAPFPVSDVYKVGPMCCSPERGGLEVVFSHFE 192 Query: 185 AYTAPDKDIH 194 A KD+H Sbjct: 193 VMPALGKDLH 202 >ref|NP_105933.1| hypothetical protein mlr5237 [Mesorhizobium loti MAFF303099] dbj|BAB51719.1| hypothetical protein [Mesorhizobium loti] Length = 191 Score = 112 bits (280), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 69/193 (35%), Positives = 100/193 (51%), Gaps = 6/193 (3%) Query: 5 VNWQSGVWSNEPVSAKVLDGAFIVEAAEGSDYWEQTMYGFQHDNGHALLASWEDSEAVEV 64 + Q W N P + A V + +D+W +T YGF DNGH L E EV Sbjct: 1 MTLQDLTWLNPPPHHAIDGDAVRVRTGKETDFWRETFYGFWRDNGHFLHRPVEGDFTAEV 60 Query: 65 SFSLQGFTELYDQAGIMLWHSSTEWIKAGIELNDGVPHIGAVVTDGYSDWSLSPVPEWTG 124 + + LYDQAG+M+ S T WIKAGIE DG+ + VVT+ SDWSL + Sbjct: 61 TVK-GDYKVLYDQAGLMVRLSETHWIKAGIEYTDGLAYFSVVVTNDTSDWSLVAIHASPD 119 Query: 125 GVVTIRASRLNDAVVIRAR--ADNHPWRTIRVARFPYETGKKAGPFVCAPTRAGLQVTFT 182 G V IR +R +A+ ++ +D H W+ +R+A FP G C+P R G +VTF+ Sbjct: 120 G-VGIRLTRHGEAIRVQYLDASDGH-WKPVRLAYFPITKTVDVGMMCCSPQREGFEVTFS 177 Query: 183 RWAYTAP-DKDIH 194 ++ P +++H Sbjct: 178 GFSVGPPISRELH 190 >ref|NP_793833.1| conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000] gb|AAO57528.1| conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000] Length = 191 Score = 110 bits (275), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 65/190 (34%), Positives = 99/190 (52%), Gaps = 5/190 (2%) Query: 7 WQSGVWSNEPVSAKVLDGAFIVEAAEGSDYWEQTMYGFQHDNGHALLASWEDSEAVEVSF 66 ++ G+W NEP V D V +D+W+QT YGF D GH L S + +V Sbjct: 2 FEKGIWLNEPRQWSVTDQRLTVITDPETDFWQQTHYGFCRDTGHFLGVSVKGEFTAQVH- 60 Query: 67 SLQG-FTELYDQAGIMLWHSSTEWIKAGIELNDGVPHIGAVVTDGYSDWSLSPVPEWTGG 125 +QG F LYDQAG+M+ W+K G+E++DG +G+V+T G SDW+ + + G Sbjct: 61 -VQGDFKTLYDQAGLMVRVDERNWVKTGVEVSDGALMLGSVLTWGQSDWATGVFDDSSSG 119 Query: 126 VVTIRASRLNDAVVIRARADNHPWRTIRVARFPYETGKKAGPFVCAPTRAGLQVTFTRWA 185 + +R + + I+ +D W +R+A FP G C+P R GL+V F+ + Sbjct: 120 -LWLRVTVAKGVMRIQHSSDGLRWPLLRLAAFPLSERYAVGAMCCSPERGGLKVVFSHFE 178 Query: 186 YT-APDKDIH 194 A KD+H Sbjct: 179 VMPALGKDLH 188 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.317 0.133 0.433 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 333,969,372 Number of extensions: 13088019 Number of successful extensions: 43695 Number of sequences better than 1.0e-05: 19 Number of HSP's gapped: 43661 Number of HSP's successfully gapped: 19 Length of query: 200 Length of database: 757,237,578 Length adjustment: 119 Effective length of query: 81 Effective length of database: 434,140,797 Effective search space: 35165404557 Effective search space used: 35165404557 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 123 (52.0 bits)