BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0369.0021.p
         (72 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|ZP_00060673.1| COG2873: O-acetylhomoserine sulfhydrylase [Cl...    92   4e-18
ref|NP_349387.1| O-acetylhomoserine sulfhydrylase [Clostridium a...    87   2e-16
ref|NP_354262.1| AGR_C_2311p [Agrobacterium tumefaciens] >gi|179...    83   2e-15
gb|EAH38651.1| unknown [environmental sequence]                        81   8e-15
ref|ZP_00053511.1| COG2873: O-acetylhomoserine sulfhydrylase [Ma...    80   1e-14

>ref|ZP_00060673.1| COG2873: O-acetylhomoserine sulfhydrylase [Clostridium thermocellum
           ATCC 27405]
          Length = 451

 Score = 91.7 bits (226), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 43/68 (63%), Positives = 52/68 (76%)

Query: 1   VKLFSYHANVGDARSLIINSPKTTHGELNPEDQKAAGIAPETIRLSIGLEDADDLIRDLE 60
           VKLF YH N+GDARSLI+NSP+TTH EL P+++K A I    IR+S GLED  DLI DLE
Sbjct: 384 VKLFHYHVNIGDARSLIVNSPQTTHSELEPDEKKFADIPENLIRISAGLEDPADLIADLE 443

Query: 61  QAFATAFV 68
           QAF  A++
Sbjct: 444 QAFEKAYI 451


>ref|NP_349387.1| O-acetylhomoserine sulfhydrylase [Clostridium acetobutylicum]
 pir||D97242 o-acetylhomoserine sulfhydrylase [imported] - Clostridium
           acetobutylicum
 gb|AAK80727.1| O-acetylhomoserine sulfhydrylase [Clostridium acetobutylicum]
          Length = 427

 Score = 86.7 bits (213), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 43/66 (65%), Positives = 51/66 (77%)

Query: 1   VKLFSYHANVGDARSLIINSPKTTHGELNPEDQKAAGIAPETIRLSIGLEDADDLIRDLE 60
           VKLFS  ANV DA+SL+I+   TTH ELN E+QKAAG+ P+ IRLSIG+EDA+DLI DL 
Sbjct: 362 VKLFSLLANVADAKSLVIHPSSTTHAELNEEEQKAAGVTPDMIRLSIGVEDAEDLIWDLN 421

Query: 61  QAFATA 66
           QA   A
Sbjct: 422 QALEQA 427


>ref|NP_354262.1| AGR_C_2311p [Agrobacterium tumefaciens]
 ref|NP_531944.1| O-acetylhomoserine sulfhydrylase [Agrobacterium tumefaciens str.
           C58 (U. Washington)]
 pir||F97511 homocysteine synthase (PA5025) [imported] - Agrobacterium
           tumefaciens (strain C58, Cereon)
 pir||AF2730 O-acetylhomoserine sulfhydrylase [imported] - Agrobacterium
           tumefaciens (strain C58, Dupont)
 gb|AAK87047.1| AGR_C_2311p [Agrobacterium tumefaciens str. C58 (Cereon)]
 gb|AAL42260.1| O-acetylhomoserine sulfhydrylase [Agrobacterium tumefaciens str.
           C58 (U. Washington)]
          Length = 427

 Score = 83.2 bits (204), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 37/64 (57%), Positives = 49/64 (76%)

Query: 1   VKLFSYHANVGDARSLIINSPKTTHGELNPEDQKAAGIAPETIRLSIGLEDADDLIRDLE 60
           ++LFS+ AN+GD RSL+I+   TTH +L PE Q AAG  P+ +RLSIG+ED  D+I DLE
Sbjct: 362 LQLFSHLANIGDTRSLVIHPASTTHAQLTPEQQTAAGAGPDVVRLSIGIEDVKDIIADLE 421

Query: 61  QAFA 64
           Q+FA
Sbjct: 422 QSFA 425


>gb|EAH38651.1| unknown [environmental sequence]
          Length = 149

 Score = 80.9 bits (198), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 37/61 (60%), Positives = 48/61 (78%)

Query: 3   LFSYHANVGDARSLIINSPKTTHGELNPEDQKAAGIAPETIRLSIGLEDADDLIRDLEQA 62
           +FS+ AN+GD+RSL+I+   TTH +L  E QKAAG  PE +R+SIG+EDADDLI DL+QA
Sbjct: 84  IFSHVANLGDSRSLVIHPASTTHRQLTTEQQKAAGTGPEIVRISIGIEDADDLISDLKQA 143

Query: 63  F 63
            
Sbjct: 144 L 144


>ref|ZP_00053511.1| COG2873: O-acetylhomoserine sulfhydrylase [Magnetospirillum
           magnetotacticum]
          Length = 577

 Score = 80.5 bits (197), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 38/64 (59%), Positives = 50/64 (78%)

Query: 1   VKLFSYHANVGDARSLIINSPKTTHGELNPEDQKAAGIAPETIRLSIGLEDADDLIRDLE 60
           V+LFS+ ANVGD RSLI++   TTH +L+ E + AAG  P+ IRLS+GLE ADD+IRDL+
Sbjct: 511 VRLFSHLANVGDTRSLILHPASTTHRQLSDEQRVAAGAGPDVIRLSVGLETADDIIRDLD 570

Query: 61  QAFA 64
           QA +
Sbjct: 571 QALS 574


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.315    0.133    0.363 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 97,011,519
Number of extensions: 3037611
Number of successful extensions: 7233
Number of sequences better than 1.0e-05: 617
Number of HSP's gapped: 7255
Number of HSP's successfully gapped: 617
Length of query: 72
Length of database: 757,237,578
Length adjustment: 43
Effective length of query: 29
Effective length of database: 640,488,321
Effective search space: 18574161309
Effective search space used: 18574161309
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 120 (50.8 bits)