BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0369.0017.p (211 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_00060670.1| COG2710: Nitrogenase molybdenum-iron protein,... 220 2e-56 ref|ZP_00014637.1| COG2710: Nitrogenase molybdenum-iron protein,... 199 3e-50 ref|NP_947692.1| possible vanadium nitrogenase associated protei... 188 8e-47 ref|NP_947979.1| possible nitrogenase iron-molybdenum protein su... 185 7e-46 ref|NP_947709.1| possible nitrogenase iron-molybdenum cofactor b... 176 4e-43 >ref|ZP_00060670.1| COG2710: Nitrogenase molybdenum-iron protein, alpha and beta chains [Clostridium thermocellum ATCC 27405] Length = 447 Score = 220 bits (561), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 103/185 (55%), Positives = 135/185 (72%), Gaps = 1/185 (0%) Query: 3 QSVIAIQRAVPVVHAGPGCSTKIHGFLGQGEGYAGGSTIPCTNSSEAEIVFGGEGKLRSV 62 Q+V+AI RAVP++H+GPGC I GF + GYAGGST PCTN +E E+VFGG +LR + Sbjct: 20 QTVVAIPRAVPILHSGPGCGEMIAGFFERSTGYAGGSTSPCTNFTEKEVVFGGINRLRDI 79 Query: 63 IDGAFKVIDADLYVVLTGCTSDIVGDDVGQVTRDFQDLGQPVVYVETGGFKSNNYVSHDL 122 I+ +KV+D DL VVLTGCT+ IVGDDV + +F G+P+V VET GFK+ N+ +H L Sbjct: 80 IENTYKVLDTDLQVVLTGCTAGIVGDDVDSLVSEFAQKGKPIVSVETAGFKATNFEAHSL 139 Query: 123 VIQAIVKQYVDKYA-VDKDQMIPGLVNVFASVPYQDPYWIGNLQELKRILTGIGLKPNVL 181 V+ AI+ QYV ++ +K + VN+ AS+PYQDP+W GNL E KR+L GIGLK NVL Sbjct: 140 VVNAIIDQYVSRFEDENKPKSQKNTVNLIASIPYQDPFWKGNLAEYKRLLAGIGLKANVL 199 Query: 182 FGPES 186 FGP+S Sbjct: 200 FGPQS 204 >ref|ZP_00014637.1| COG2710: Nitrogenase molybdenum-iron protein, alpha and beta chains [Rhodospirillum rubrum] Length = 540 Score = 199 bits (507), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 100/190 (52%), Positives = 133/190 (70%), Gaps = 9/190 (4%) Query: 2 QQSVIAIQRAVPVVHAGPGCSTKIHGFLGQGEGYAGG-----STIPCTNSSEAEIVFGGE 56 QQSV AI+RA+P+VHAGPGC+ K+H L + GY G + + TNS E E+VFGGE Sbjct: 116 QQSVCAIERAIPIVHAGPGCAIKLHCGLSEANGYQGSGYSGGAAVVSTNSGEREVVFGGE 175 Query: 57 GKLRSVIDGAFKVIDADLYVVLTGCTSDIVGDDVGQVTRDFQDLGQPVVYVETGGFKSNN 116 LR VI GA KV+D DL+VVLTGCTS+++GDD +V +F+ G P+V+ TGGF+ +N Sbjct: 176 ESLRKVIAGALKVMDGDLFVVLTGCTSELIGDDSARVVAEFRAKGAPIVHAATGGFRGSN 235 Query: 117 YVSHDLVIQAIVKQYVDKYAVDKDQMIPGLVNVFASVPYQDPYWIGNLQELKRILTGIGL 176 + HD V +AI+ Q +D Q +PGLVNV+ASVPYQDP+W GNLQ ++ +L +GL Sbjct: 236 LLGHDTVAKAIIDQLLDP----APQTVPGLVNVWASVPYQDPFWRGNLQAIRALLASLGL 291 Query: 177 KPNVLFGPES 186 N+LFGP S Sbjct: 292 TVNILFGPGS 301 >ref|NP_947692.1| possible vanadium nitrogenase associated protein N (U51863) [Rhodopseudomonas palustris CGA009] emb|CAE27788.1| possible vanadium nitrogenase associated protein N (U51863) [Rhodopseudomonas palustris CGA009] Length = 463 Score = 188 bits (477), Expect = 8e-47, Method: Compositional matrix adjust. Identities = 91/189 (48%), Positives = 127/189 (67%), Gaps = 8/189 (4%) Query: 3 QSVIAIQRAVPVVHAGPGCSTKIHGFLGQGEGY-----AGGSTIPCTNSSEAEIVFGGEG 57 Q+V AI RA+P+ H GPGC+ K G L Y G P TN+++ E++FGGE Sbjct: 39 QTVAAIPRAIPITHCGPGCADKQCGALAFNNAYQGGGWGGLGVAPSTNATQREVIFGGEN 98 Query: 58 KLRSVIDGAFKVIDADLYVVLTGCTSDIVGDDVGQVTRDFQDLGQPVVYVETGGFKSNNY 117 +LR ++ ++++ADL+VVLTGC D++GDDV V ++FQ G PVVY TGGF+ NNY Sbjct: 99 RLRELVTHTLELMEADLFVVLTGCIPDLIGDDVPAVVKEFQAKGAPVVYAGTGGFRGNNY 158 Query: 118 VSHDLVIQAIVKQYVDKYAVDKDQMIPGLVNVFASVPYQDPYWIGNLQELKRILTGIGLK 177 H++V +AI+ Q+ A ++ GLVN++A +PYQDP+W G+L ELKR+L GIGL+ Sbjct: 159 TGHEVVTRAIIDQFASTDAGPREH---GLVNLWAPLPYQDPFWRGDLAELKRLLQGIGLR 215 Query: 178 PNVLFGPES 186 NVLFGP S Sbjct: 216 VNVLFGPGS 224 >ref|NP_947979.1| possible nitrogenase iron-molybdenum protein subunit nifK homolog [Rhodopseudomonas palustris CGA009] emb|CAE28078.1| possible nitrogenase iron-molybdenum protein subunit nifK homolog [Rhodopseudomonas palustris CGA009] Length = 460 Score = 185 bits (469), Expect = 7e-46, Method: Compositional matrix adjust. Identities = 99/202 (49%), Positives = 137/202 (67%), Gaps = 9/202 (4%) Query: 2 QQSVIAIQRAVPVVHAGPGCSTKIHGFL-----GQGEGYAGGSTIPCTNSSEAEIVFGGE 56 Q+ AI R VP+ H GPGC+ K + L QG GY GG +P TN+S+ E++FGG Sbjct: 35 MQTAAAIPRVVPITHCGPGCADKQYMNLTFYNGFQGSGYGGGPVVPSTNASQREVIFGGA 94 Query: 57 GKLRSVIDGAFKVIDADLYVVLTGCTSDIVGDDVGQVTRDFQDLGQPVVYVETGGFKSNN 116 +LR +I+ + V+DADL+VVLTGC D+VGDDVG V RDFQ G P+VY ETGGF+ NN Sbjct: 95 DRLRELIESSQLVLDADLFVVLTGCIPDLVGDDVGSVVRDFQKRGVPIVYAETGGFRGNN 154 Query: 117 YVSHDLVIQAIVKQYVDKYAVDKDQMIPGLVNVFASVPYQDPYWIGNLQELKRILTGIGL 176 + H+ V AI++QY+ + ++Q G VN+++ +PYQ+ +W G+L+E+KR+L GIGL Sbjct: 155 FTGHEAVTHAIIEQYLGPWDGVREQ---GTVNLWSLLPYQNTFWRGDLEEIKRLLEGIGL 211 Query: 177 KPNVLFGPESX-XXXWTNGCRS 197 K NVLFGP+S W N R+ Sbjct: 212 KVNVLFGPDSEGLSEWRNIPRA 233 >ref|NP_947709.1| possible nitrogenase iron-molybdenum cofactor biosynthesis protein NifE homolog [Rhodopseudomonas palustris CGA009] emb|CAE27805.1| possible nitrogenase iron-molybdenum cofactor biosynthesis protein NifE homolog [Rhodopseudomonas palustris CGA009] Length = 459 Score = 176 bits (445), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 88/184 (47%), Positives = 120/184 (65%), Gaps = 4/184 (2%) Query: 4 SVIAIQRAVPVVHAGPGCSTKIHGFLGQGEGYAGGS-TIPCTNSSEAEIVFGGEGKLRSV 62 SVIAI A+P+ H GPGC+TK L Y GG +P TN E++FGG +L + Sbjct: 36 SVIAIPGAIPITHCGPGCATKQFHALSGINAYQGGEFHVPSTNLGNQEVIFGGADRLDEL 95 Query: 63 IDGAFKVIDADLYVVLTGCTSDIVGDDVGQVTRDFQDLGQPVVYVETGGFKSNNYVSHDL 122 I KV++ADL+VV TGC +VGDDVG V R +Q G P+V ET G++ NN+ H+ Sbjct: 96 IASTLKVMEADLFVVQTGCIPGLVGDDVGSVVRKYQKRGVPIVVAETSGYRGNNFTGHET 155 Query: 123 VIQAIVKQYVDKYAVDKDQMIPGLVNVFASVPYQDPYWIGNLQELKRILTGIGLKPNVLF 182 VI+AI+ Q+VD + GLVNV++ +PYQ+P+W G+L E++RIL GIGL+ N+LF Sbjct: 156 VIRAIIDQFVD---AGDAPLQHGLVNVWSLLPYQNPFWRGDLSEIRRILEGIGLQVNILF 212 Query: 183 GPES 186 GP S Sbjct: 213 GPAS 216 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.319 0.140 0.434 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 342,360,824 Number of extensions: 14974385 Number of successful extensions: 29405 Number of sequences better than 1.0e-05: 87 Number of HSP's gapped: 29437 Number of HSP's successfully gapped: 87 Length of query: 211 Length of database: 757,237,578 Length adjustment: 120 Effective length of query: 91 Effective length of database: 431,425,698 Effective search space: 39259738518 Effective search space used: 39259738518 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 123 (52.0 bits)