BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0369.0009.p
         (130 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|ZP_00097919.1| COG0640: Predicted transcriptional regulators...   105   3e-22
ref|NP_722396.1| putative transcriptional regulator [Streptococc...    69   3e-11
gb|AAL04093.1| MepR [Streptococcus mutans]                             69   3e-11
ref|NP_563220.1| probable transcriptional regulator [Clostridium...    64   1e-09
ref|NP_816071.1| transcriptional regulator, ArsR family [Enteroc...    61   6e-09

>ref|ZP_00097919.1| COG0640: Predicted transcriptional regulators [Desulfitobacterium
           hafniense]
          Length = 350

 Score =  105 bits (262), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 53/130 (40%), Positives = 80/130 (61%)

Query: 1   LQNVYVLPSTFIFPHLLIDWTADSLVLPLAVDIPGLPCSEAPPEDLLRQFKALGDATRLR 60
           +  + V PSTFI PHLL+     ++ +  AV +PG    +A P DLL    A+ D +R++
Sbjct: 204 ISGIMVRPSTFIAPHLLMGTNEAAVTVGYAVTVPGAERYDAVPRDLLGIMNAMSDESRMK 263

Query: 61  ILKLLWQGPHCTKQLAPILGISEAAVSKQLKLLSEAGLAGAERKGNYLFYTSHKEAFGRL 120
           IL+ ++  P+CT+QLA +  +SEA VSK LK+LS AGL  ++RKGNY+FY   +     +
Sbjct: 264 ILRQVFYHPYCTQQLAEMYNLSEATVSKHLKVLSRAGLVYSQRKGNYVFYYGDRNRIQLI 323

Query: 121 IVLQRQYLEQ 130
            V   Q+ +Q
Sbjct: 324 PVDLNQFFDQ 333


>ref|NP_722396.1| putative transcriptional regulator [Streptococcus mutans UA159]
 gb|AAN59702.1| putative transcriptional regulator [Streptococcus mutans UA159]
          Length = 365

 Score = 69.3 bits (168), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 38/109 (34%), Positives = 63/109 (57%), Gaps = 3/109 (2%)

Query: 3   NVYVLPSTFIFPHLLIDWTADSLVLPLAVDIPGLPCS-EAPPEDLLRQFKALGDATRLRI 61
           ++ +LPS FI+PHL ++  + +  + +  DI   P    A PE+L+  FKAL D  RL+I
Sbjct: 240 SIMLLPSYFIWPHLFVE--SFNQGIAVTYDITEQPSYYNATPENLITIFKALSDPVRLQI 297

Query: 62  LKLLWQGPHCTKQLAPILGISEAAVSKQLKLLSEAGLAGAERKGNYLFY 110
           +  +   P  T+ LA IL +S ++VS+ L++L EA L    +   ++ Y
Sbjct: 298 MNYVIDKPSTTQSLAQILVMSNSSVSRHLQILKEANLLTTTKAKKFVLY 346


>gb|AAL04093.1| MepR [Streptococcus mutans]
          Length = 159

 Score = 69.3 bits (168), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 38/109 (34%), Positives = 61/109 (55%), Gaps = 3/109 (2%)

Query: 3   NVYVLPSTFIFPHLLIDWTADSLVLPLAVDIPGLPCS-EAPPEDLLRQFKALGDATRLRI 61
           ++ +LPS FI+PHL ++     + +    DI   P    A PE+L+  FKAL D  RL+I
Sbjct: 34  SIMLLPSYFIWPHLFVESFNQGIAV--TYDITEQPSYYNATPENLITIFKALSDPVRLQI 91

Query: 62  LKLLWQGPHCTKQLAPILGISEAAVSKQLKLLSEAGLAGAERKGNYLFY 110
           +  +   P  T+ LA IL +S ++VS+ L++L EA L    +   ++ Y
Sbjct: 92  MNYVIDKPSTTQSLAQILVMSNSSVSRHLQILKEANLLTTTKAKKFVLY 140


>ref|NP_563220.1| probable transcriptional regulator [Clostridium perfringens]
 dbj|BAB82010.1| probable transcriptional regulator [Clostridium perfringens str.
           13]
          Length = 119

 Score = 63.9 bits (154), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 49/74 (66%), Gaps = 4/74 (5%)

Query: 42  PPEDLLRQ----FKALGDATRLRILKLLWQGPHCTKQLAPILGISEAAVSKQLKLLSEAG 97
           P E++L +    FK  GD+TR++IL  L++G  C   +A +LG+S++AVS QL++L +A 
Sbjct: 27  PKEEVLYELAEIFKVFGDSTRIKILCALFEGEMCVCDMAELLGVSQSAVSHQLRVLKQAR 86

Query: 98  LAGAERKGNYLFYT 111
           L    R+G  ++Y+
Sbjct: 87  LVKFRREGKIVYYS 100


>ref|NP_816071.1| transcriptional regulator, ArsR family [Enterococcus faecalis V583]
 gb|AAO82141.1| transcriptional regulator, ArsR family [Enterococcus faecalis V583]
          Length = 95

 Score = 61.2 bits (147), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 29/62 (46%), Positives = 41/62 (66%)

Query: 50  FKALGDATRLRILKLLWQGPHCTKQLAPILGISEAAVSKQLKLLSEAGLAGAERKGNYLF 109
           +K L D TRLRIL LL +G H    ++  LG+ ++AVS QLKLL ++ +  A R+G  +F
Sbjct: 14  YKVLSDPTRLRILLLLKEGEHNVTAISEQLGMEQSAVSHQLKLLRDSRVVKARREGKTIF 73

Query: 110 YT 111
           YT
Sbjct: 74  YT 75


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.323    0.140    0.422 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 188,468,262
Number of extensions: 6721199
Number of successful extensions: 16091
Number of sequences better than 1.0e-05: 54
Number of HSP's gapped: 16175
Number of HSP's successfully gapped: 54
Length of query: 130
Length of database: 757,237,578
Length adjustment: 93
Effective length of query: 37
Effective length of database: 504,733,371
Effective search space: 18675134727
Effective search space used: 18675134727
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 120 (50.8 bits)